Published in Bioessays on May 01, 2010
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Transcriptional regulation of rod photoreceptor homeostasis revealed by in vivo NRL targetome analysis. PLoS Genet (2012) 1.19
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Initial deployment of the cardiogenic gene regulatory network in the basal chordate, Ciona intestinalis. Dev Biol (2012) 0.86
Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization. Genome Biol (2013) 0.84
SPIC: a novel similarity metric for comparing transcription factor binding site motifs based on information contents. BMC Syst Biol (2013) 0.79
Modularity of CHIP/LDB transcription complexes regulates cell differentiation. Fly (Austin) (2011) 0.78
ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature (2009) 18.38
Unlocking the secrets of the genome. Nature (2009) 11.80
Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell (2008) 7.93
Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. PLoS Biol (2008) 6.30
Evidence for stabilizing selection in a eukaryotic enhancer element. Nature (2000) 5.97
The role of DNA shape in protein-DNA recognition. Nature (2009) 5.52
Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions. Genome Biol (2009) 5.23
Predicting expression patterns from regulatory sequence in Drosophila segmentation. Nature (2008) 5.08
Reliable prediction of regulator targets using 12 Drosophila genomes. Genome Res (2007) 4.89
Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo. Genes Dev (2007) 4.59
Gene regulatory networks for development. Proc Natl Acad Sci U S A (2005) 4.45
An atomic model of the interferon-beta enhanceosome. Cell (2007) 4.22
Local DNA topography correlates with functional noncoding regions of the human genome. Science (2009) 4.18
Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. Cell (2008) 3.96
Combinatorial binding predicts spatio-temporal cis-regulatory activity. Nature (2009) 3.85
Functional specificity of a Hox protein mediated by the recognition of minor groove structure. Cell (2007) 3.34
Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards? J Cell Biochem (2005) 2.64
A self-organizing system of repressor gradients establishes segmental complexity in Drosophila. Nature (2003) 2.21
Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution II: dynamics. Genome Biol (2006) 2.09
Direct regulation of rhodopsin 1 by Pax-6/eyeless in Drosophila: evidence for a conserved function in photoreceptors. Genes Dev (1997) 1.69
Otd/Crx, a dual regulator for the specification of ommatidia subtypes in the Drosophila retina. Dev Cell (2003) 1.67
Functional architecture and evolution of transcriptional elements that drive gene coexpression. Science (2007) 1.51
A new visualization approach for identifying mutations that affect differentiation and organization of the Drosophila ommatidia. Development (2001) 1.39
Comparative genomics of gene regulation-conservation and divergence of cis-regulatory information. Curr Opin Genet Dev (2009) 1.27
Developmental mechanisms and cis-regulatory codes. Curr Opin Genet Dev (2006) 1.11
A conserved regulatory element present in all Drosophila rhodopsin genes mediates Pax6 functions and participates in the fine-tuning of cell-specific expression. Mech Dev (2001) 1.09
cis-Regulatory networks during development: a view of Drosophila. Curr Opin Genet Dev (2008) 1.04
Combinatorial patterning mechanisms in the Drosophila embryo. Brief Funct Genomic Proteomic (2009) 0.97
To bind or not to bind. Nat Genet (2001) 0.93
A lexicon for homeodomain-DNA recognition. Cell (2008) 0.89
Reverse-engineering a transcriptional enhancer: a case study in Drosophila. Tissue Eng Part A (2008) 0.87
Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science (2010) 5.56
Stochasticity and cell fate. Science (2008) 4.39
A method for parental RNA interference in the wasp Nasonia vitripennis. Nat Protoc (2006) 2.52
The color-vision circuit in the medulla of Drosophila. Curr Biol (2008) 2.24
The growth regulators warts/lats and melted interact in a bistable loop to specify opposite fates in Drosophila R8 photoreceptors. Cell (2005) 2.00
Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers. Genome Res (2002) 1.82
Homothorax switches function of Drosophila photoreceptors from color to polarized light sensors. Cell (2003) 1.76
Circadian pacemaker neurons transmit and modulate visual information to control a rapid behavioral response. Neuron (2005) 1.75
Otd/Crx, a dual regulator for the specification of ommatidia subtypes in the Drosophila retina. Dev Cell (2003) 1.67
Localized maternal orthodenticle patterns anterior and posterior in the long germ wasp Nasonia. Nature (2006) 1.64
Distinction between color photoreceptor cell fates is controlled by Prospero in Drosophila. Dev Cell (2003) 1.63
Motion vision is independent of color in Drosophila. Proc Natl Acad Sci U S A (2008) 1.59
Switch of rhodopsin expression in terminally differentiated Drosophila sensory neurons. Nature (2008) 1.57
Contribution of photoreceptor subtypes to spectral wavelength preference in Drosophila. Proc Natl Acad Sci U S A (2010) 1.56
Power tools for gene expression and clonal analysis in Drosophila. Nat Methods (2011) 1.48
Temporal patterning of Drosophila medulla neuroblasts controls neural fates. Nature (2013) 1.39
Iroquois complex genes induce co-expression of rhodopsins in Drosophila. PLoS Biol (2008) 1.38
Stochastic mechanisms of cell fate specification that yield random or robust outcomes. Annu Rev Cell Dev Biol (2010) 1.32
Adult and larval photoreceptors use different mechanisms to specify the same Rhodopsin fates. Genes Dev (2007) 1.26
Interlocked feedforward loops control cell-type-specific Rhodopsin expression in the Drosophila eye. Cell (2011) 1.21
Pax genes and eye organogenesis. Curr Opin Genet Dev (2002) 1.20
Building a retinal mosaic: cell-fate decision in the fly eye. Trends Cell Biol (2004) 1.20
The twin spot generator for differential Drosophila lineage analysis. Nat Methods (2009) 1.17
Two Pax genes, eye gone and eyeless, act cooperatively in promoting Drosophila eye development. Development (2003) 1.16
Permissive and instructive anterior patterning rely on mRNA localization in the wasp embryo. Science (2007) 1.14
Distinct visual pathways mediate Drosophila larval light avoidance and circadian clock entrainment. J Neurosci (2011) 1.13
Feedback from rhodopsin controls rhodopsin exclusion in Drosophila photoreceptors. Nature (2011) 1.10
A caudal mRNA gradient controls posterior development in the wasp Nasonia. Development (2006) 1.07
Nasonia. Curr Biol (2003) 1.05
Building a projection map for photoreceptor neurons in the Drosophila optic lobes. Semin Cell Dev Biol (2004) 1.05
Opposite feedbacks in the Hippo pathway for growth control and neural fate. Science (2013) 1.04
'One receptor' rules in sensory neurons. Dev Neurosci (2004) 1.02
Binary fate decisions in differentiating neurons. Curr Opin Neurobiol (2010) 1.02
The retinal mosaics of opsin expression in invertebrates and vertebrates. Dev Neurobiol (2011) 1.01
Regional modulation of a stochastically expressed factor determines photoreceptor subtypes in the Drosophila retina. Dev Cell (2013) 1.00
Generating patterned arrays of photoreceptors. Curr Opin Genet Dev (2007) 0.99
The phylogenetic origin of oskar coincided with the origin of maternally provisioned germ plasm and pole cells at the base of the Holometabola. PLoS Genet (2011) 0.98
Establishing and maintaining gene expression patterns: insights from sensory receptor patterning. Development (2013) 0.98
Heads and tails: evolution of antero-posterior patterning in insects. Biochim Biophys Acta (2008) 0.97
Stochastic neuronal cell fate choices. Curr Opin Neurobiol (2008) 0.96
A major role for zygotic hunchback in patterning the Nasonia embryo. Development (2005) 0.95
Binary regulation of Hippo pathway by Merlin/NF2, Kibra, Lgl, and Melted specifies and maintains postmitotic neuronal fate. Dev Cell (2011) 0.95
Temporal patterning of neural progenitors in Drosophila. Curr Top Dev Biol (2013) 0.93
Distinct mechanisms for mRNA localization during embryonic axis specification in the wasp Nasonia. Dev Biol (2007) 0.92
Interchromosomal communication coordinates intrinsically stochastic expression between alleles. Science (2014) 0.90
Dissection and staining of Drosophila optic lobes at different stages of development. Cold Spring Harb Protoc (2011) 0.90
Cell migration in Drosophila optic lobe neurons is controlled by eyeless/Pax6. Development (2011) 0.89
Conserved miR-8/miR-200 defines a glial niche that controls neuroepithelial expansion and neuroblast transition. Dev Cell (2013) 0.86
Regulation and function of tailless in the long germ wasp Nasonia vitripennis. Dev Genes Evol (2006) 0.85
Flipping coins in the fly retina. Curr Top Dev Biol (2005) 0.85
Novel modes of localization and function of nanos in the wasp Nasonia. Development (2010) 0.83
Dual mode of embryonic development is highlighted by expression and function of Nasonia pair-rule genes. Elife (2014) 0.83
The neuronal transcription factor erect wing regulates specification and maintenance of Drosophila R8 photoreceptor subtypes. Dev Biol (2013) 0.82
Cell biology: a new view of photoreceptors. Nature (2002) 0.80
Developmental mechanisms, patterning and evolution. Curr Opin Genet Dev (2010) 0.80
Deterministic or stochastic choices in retinal neuron specification. Neuron (2012) 0.80
Preview. A penetrating look at stochasticity in development. Cell (2010) 0.79
Evolution of development: beyond bicoid. Curr Biol (2003) 0.79
Homothorax and Extradenticle alter the transcription factor network in Drosophila ommatidia at the dorsal rim of the retina. Development (2014) 0.78
Molecular biology. Hiding in plain sight. Science (2010) 0.78
'De-evolution' of Drosophila toward a more generic mode of axis patterning. Int J Dev Biol (2003) 0.77
The first steps in Drosophila motion detection. Neuron (2007) 0.76
Photoreceptor axons play hide and seek. Nat Neurosci (2005) 0.76
Developmental biology. Flipping the light switch. Science (2010) 0.75
Different ways to make neurons: parallel evolution in the SoxB family. Genome Biol (2014) 0.75
Generation of uniform fly retinas. Curr Biol (2007) 0.75
Developmental biology: Flowers' wings, fruitflies' petals. Nature (2003) 0.75
Dying to entrain: regulating ipRGC spacing. Dev Cell (2013) 0.75
Patterning lessons from a dorsalized embryo. Dev Cell (2008) 0.75
Olfactory identity kicked up a NOTCH. Nat Neurosci (2007) 0.75
Opposing feedbacks on Ras tune receptor tyrosine kinase signaling. Sci Signal (2013) 0.75
Maintaining a stochastic neuronal cell fate decision. Genes Dev (2009) 0.75
Evolution of color vision. Results Probl Cell Differ (2002) 0.75