PubRank

Doheon Lee

Author PubWeight™ 71.53‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Network-based classification of breast cancer metastasis. Mol Syst Biol 2007 12.18
2 Inferring pathway activity toward precise disease classification. PLoS Comput Biol 2008 3.48
3 Phytochromes promote seedling light responses by inhibiting four negatively-acting phytochrome-interacting factors. Proc Natl Acad Sci U S A 2009 2.61
4 Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis. Plant Cell 2009 2.44
5 A feature-based approach to modeling protein-protein interaction hot spots. Nucleic Acids Res 2009 1.41
6 Modularized learning of genetic interaction networks from biological annotations and mRNA expression data. Bioinformatics 2005 1.33
7 Optogenetic mimicry of the transient activation of dopamine neurons by natural reward is sufficient for operant reinforcement. PLoS One 2012 1.32
8 SNP@Ethnos: a database of ethnically variant single-nucleotide polymorphisms. Nucleic Acids Res 2006 1.14
9 A protein interaction network associated with asthma. J Theor Biol 2008 1.14
10 Dynamic changes in DNA methylation and hydroxymethylation when hES cells undergo differentiation toward a neuronal lineage. Hum Mol Genet 2013 1.08
11 Regression trees for regulatory element identification. Bioinformatics 2004 1.07
12 Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes. BMC Syst Biol 2010 1.04
13 Detecting clusters of different geometrical shapes in microarray gene expression data. Bioinformatics 2005 1.03
14 RBSDesigner: software for designing synthetic ribosome binding sites that yields a desired level of protein expression. Bioinformatics 2010 1.03
15 Combining tissue transcriptomics and urine metabolomics for breast cancer biomarker identification. Bioinformatics 2009 1.03
16 Building the process-drug-side effect network to discover the relationship between biological processes and side effects. BMC Bioinformatics 2011 1.00
17 Patome: a database server for biological sequence annotation and analysis in issued patents and published patent applications. Nucleic Acids Res 2006 0.98
18 Protein comparison at the domain architecture level. BMC Bioinformatics 2009 0.96
19 DAhunter: a web-based server that identifies homologous proteins by comparing domain architecture. Nucleic Acids Res 2008 0.94
20 Analysis of AML genes in dysregulated molecular networks. BMC Bioinformatics 2009 0.93
21 Specificity of molecular interactions in transient protein-protein interaction interfaces. Proteins 2006 0.93
22 Multivariate classification of urine metabolome profiles for breast cancer diagnosis. BMC Bioinformatics 2010 0.93
23 Density-induced support vector data description. IEEE Trans Neural Netw 2007 0.91
24 PLPD: reliable protein localization prediction from imbalanced and overlapped datasets. Nucleic Acids Res 2006 0.90
25 Speed estimation from a tri-axial accelerometer using neural networks. Conf Proc IEEE Eng Med Biol Soc 2007 0.89
26 Architecture of basic building blocks in protein and domain structural interaction networks. Bioinformatics 2004 0.89
27 The association of Alu repeats with the generation of potential AU-rich elements (ARE) at 3' untranslated regions. BMC Genomics 2004 0.86
28 Identification of temporal association rules from time-series microarray data sets. BMC Bioinformatics 2009 0.85
29 A method to improve protein subcellular localization prediction by integrating various biological data sources. BMC Bioinformatics 2009 0.85
30 bZIPDB: a database of regulatory information for human bZIP transcription factors. BMC Genomics 2007 0.84
31 AsiDesigner: exon-based siRNA design server considering alternative splicing. Nucleic Acids Res 2008 0.83
32 Social deficits in the AY-9944 mouse model of atypical absence epilepsy. Behav Brain Res 2012 0.82
33 Discovering context-specific relationships from biological literature by using multi-level context terms. BMC Med Inform Decis Mak 2012 0.82
34 Prediction of extracellular matrix proteins based on distinctive sequence and domain characteristics. J Comput Biol 2010 0.82
35 Rule-based multi-scale simulation for drug effect pathway analysis. BMC Med Inform Decis Mak 2013 0.82
36 H-CORE: enabling genome-scale Bayesian analysis of biological systems without prior knowledge. Biosystems 2006 0.82
37 MKEM: a Multi-level Knowledge Emergence Model for mining undiscovered public knowledge. BMC Bioinformatics 2010 0.81
38 Generation and application of drug indication inference models using typed network motif comparison analysis. BMC Med Inform Decis Mak 2013 0.81
39 CaGe: A Web-Based Cancer Gene Annotation System for Cancer Genomics. Genomics Inform 2012 0.81
40 Mathematical modeling of humoral immune response suppression by passively administered antibodies in mice. J Theor Biol 2006 0.80
41 Exploring molecular links between lymph node invasion and cancer prognosis in human breast cancer. BMC Syst Biol 2011 0.79
42 SigCS base: an integrated genetic information resource for human cerebral stroke. BMC Syst Biol 2011 0.79
43 Inference of combinatorial Boolean rules of synergistic gene sets from cancer microarray datasets. Bioinformatics 2010 0.79
44 Predicting disease phenotypes based on the molecular networks with condition-responsive correlation. Int J Data Min Bioinform 2011 0.79
45 Prediction of cancer prognosis with the genetic basis of transcriptional variations. Genomics 2011 0.78
46 Towards clustering of incomplete microarray data without the use of imputation. Bioinformatics 2006 0.77
47 Computational identification of combinatorial regulation and transcription factor binding sites. Biotechnol Bioeng 2007 0.77
48 Context-dependent transcriptional regulations between signal transduction pathways. BMC Bioinformatics 2011 0.77
49 Relationships between genetic polymorphisms and transcriptional profiles for outcome prediction in anticancer agent treatment. BMB Rep 2010 0.76
50 Synthetic inter-species cooperation of host and virus for targeted genetic evolution. J Biotechnol 2011 0.76
51 Computational identification of altered metabolism using gene expression and metabolic pathways. Biotechnol Bioeng 2009 0.76
52 Context-based resolution of semantic conflicts in biological pathways. BMC Med Inform Decis Mak 2015 0.76
53 An Approach to Reducing Information Loss and Achieving Diversity of Sensitive Attributes in k-anonymity Methods. Interact J Med Res 2012 0.76
54 Prioritization of SNPs for genome-wide association studies using an interaction model of genetic variation, gene expression, and trait variation. Mol Cells 2012 0.76
55 Inference of combinatorial neuronal synchrony with Bayesian networks. J Neurosci Methods 2009 0.76
56 Genome-wide DNA-binding specificity of PIL5, an Arabidopsis basic Helix-Loop-Helix (bHLH) transcription factor. Int J Data Min Bioinform 2010 0.76
57 Comparative analysis of the JAK/STAT signaling through erythropoietin receptor and thrombopoietin receptor using a systems approach. BMC Bioinformatics 2009 0.75
58 Inferring disease association using clinical factors in a combinatorial manner and their use in drug repositioning. Bioinformatics 2013 0.75
59 Analysis of AML Genes in Dysregulated Molecular Networks. Summit on Translat Bioinforma 2009 0.75
60 PSExplorer: whole parameter space exploration for molecular signaling pathway dynamics. Bioinformatics 2010 0.75
61 Mining metastasis related genes by primary-secondary tumor comparisons from large-scale databases. BMC Bioinformatics 2009 0.75
62 Inference of brain pathway activities for Alzheimer's disease classification. BMC Med Inform Decis Mak 2015 0.75
63 Computational identification of significantly regulated metabolic reactions by integration of data on enzyme activity and gene expression. BMB Rep 2008 0.75
64 Normalization of Tumor Vessels by Tie2 Activation and Ang2 Inhibition Enhances Drug Delivery and Produces a Favorable Tumor Microenvironment. Cancer Cell 2017 0.75
65 Predicting the Absorption Potential of Chemical Compounds through a Deep Learning Approach. IEEE/ACM Trans Comput Biol Bioinform 2016 0.75
66 CONVIRT: a web-based tool for transcriptional regulatory site identification using a conserved virtual chromosome. BMB Rep 2009 0.75
67 A Bayesian ensemble approach with a disease gene network predicts damaging effects of missense variants of human cancers. Hum Genet 2012 0.75
68 Predicting tissue-specific expressions based on sequence characteristics. BMB Rep 2011 0.75
69 Fuzzy branching temporal logic. IEEE Trans Syst Man Cybern B Cybern 2004 0.75