Published in Trends Plant Sci on July 17, 2010
The genome of Theobroma cacao. Nat Genet (2010) 3.47
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RNA-seq in grain unveils fate of neo- and paleopolyploidization events in bread wheat (Triticum aestivum L.). Genome Biol (2011) 1.07
Combined meta-genomics analyses unravel candidate genes for the grain dietary fiber content in bread wheat (Triticum aestivum L.). Funct Integr Genomics (2010) 1.01
A comparative genome analysis of PME and PMEI families reveals the evolution of pectin metabolism in plant cell walls. PLoS One (2013) 0.95
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Grass microRNA gene paleohistory unveils new insights into gene dosage balance in subgenome partitioning after whole-genome duplication. Plant Cell (2012) 0.92
Decoding plant and animal genome plasticity from differential paleo-evolutionary patterns and processes. Genome Biol Evol (2012) 0.92
Deconstruction of the (paleo)polyploid grapevine genome based on the analysis of transposition events involving NBS resistance genes. PLoS One (2012) 0.91
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Paleo-evolutionary plasticity of plant disease resistance genes. BMC Genomics (2014) 0.89
Deciphering the genomic structure, function and evolution of carotenogenesis related phytoene synthases in grasses. BMC Genomics (2012) 0.89
Allocation of the S-genome chromosomes of Aegilops variabilis Eig. carrying powdery mildew resistance in triticale (× Triticosecale Wittmack). Protoplasma (2015) 0.89
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Apospory appears to accelerate onset of meiosis and sexual embryo sac formation in sorghum ovules. BMC Plant Biol (2011) 0.87
Comparative mapping in the Fagaceae and beyond with EST-SSRs. BMC Plant Biol (2012) 0.85
A BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome. BMC Res Notes (2012) 0.84
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Mapping ancestral genomes with massive gene loss: a matrix sandwich problem. Bioinformatics (2011) 0.83
Fine physical and genetic mapping of powdery mildew resistance gene MlIW172 originating from wild emmer (Triticum dicoccoides). PLoS One (2014) 0.82
The dynamics of functional classes of plant genes in rediploidized ancient polyploids. BMC Bioinformatics (2013) 0.81
Phylogenetic analyses provide the first insights into the evolution of OVATE family proteins in land plants. Ann Bot (2014) 0.81
Cross-family translational genomics of abiotic stress-responsive genes between Arabidopsis and Medicago truncatula. PLoS One (2014) 0.81
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Evidence of intense chromosomal shuffling during conifer evolution. Genome Biol Evol (2015) 0.79
Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01. BMC Genomics (2016) 0.79
A high-resolution physical map integrating an anchored chromosome with the BAC physical maps of wheat chromosome 6B. BMC Genomics (2015) 0.77
Wheat Zapper: a flexible online tool for colinearity studies in grass genomes. Funct Integr Genomics (2013) 0.77
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Diversification of the plant-specific hybrid glycine-rich protein (HyGRP) genes in cereals. Front Plant Sci (2014) 0.75
Gene expression and fractionation resistance. BMC Genomics (2014) 0.75
Subgenome-specific assembly of vitamin E biosynthesis genes and expression patterns during seed development provide insight into the evolution of oat genome. Plant Biotechnol J (2016) 0.75
Decipher the ancestry of the plant-specific LBD gene family. BMC Genomics (2017) 0.75
Reconstruction of a composite comparative map composed of ten legume genomes. Genes Genomics (2016) 0.75
Genetic diversity analysis in a set of Caricaceae accessions using resistance gene analogues. BMC Genet (2014) 0.75
Construction of high-resolution genetic maps of Zoysia matrella (L.) Merrill and applications to comparative genomic analysis and QTL mapping of resistance to fall armyworm. BMC Genomics (2016) 0.75
CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr Biol (2002) 15.13
The Sorghum bicolor genome and the diversification of grasses. Nature (2009) 14.62
Analyses of pig genomes provide insight into porcine demography and evolution. Nature (2012) 5.58
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Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc Natl Acad Sci U S A (2006) 4.52
Close split of sorghum and maize genome progenitors. Genome Res (2004) 4.34
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Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components. Genes Dev (2007) 3.75
Physical and genetic structure of the maize genome reflects its complex evolutionary history. PLoS Genet (2007) 3.66
The genome of Theobroma cacao. Nat Genet (2010) 3.47
Identification and characterization of shared duplications between rice and wheat provide new insight into grass genome evolution. Plant Cell (2008) 3.25
A physical map of the 1-gigabase bread wheat chromosome 3B. Science (2008) 3.21
Gene expression of a gene family in maize based on noncollinear haplotypes. Proc Natl Acad Sci U S A (2003) 3.14
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Res (2007) 3.13
Gene movement by Helitron transposons contributes to the haplotype variability of maize. Proc Natl Acad Sci U S A (2005) 3.13
Long-term safety and efficacy following systemic administration of a self-complementary AAV vector encoding human FIX pseudotyped with serotype 5 and 8 capsid proteins. Mol Ther (2011) 3.10
Unlocking the barley genome by chromosomal and comparative genomics. Plant Cell (2011) 3.03
Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Res (2006) 3.02
Pattern of diversity in the genomic region near the maize domestication gene tb1. Proc Natl Acad Sci U S A (2003) 2.85
Molecular evidence for a single evolutionary origin of domesticated rice. Proc Natl Acad Sci U S A (2011) 2.53
Structure and architecture of the maize genome. Plant Physiol (2005) 2.52
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Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus). Nat Biotechnol (2012) 2.45
Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces. Plant Cell (2010) 2.45
Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and Aegilops). Plant Cell (2005) 2.40
The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions. Nat Genet (2012) 2.33
The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Res (2005) 2.23
Mosaic organization of orthologous sequences in grass genomes. Genome Res (2002) 2.22
Genetic and haplotypic structure in 14 European and African cattle breeds. Genetics (2007) 2.18
Gene loss and movement in the maize genome. Genome Res (2004) 2.11
Considering transposable element diversification in de novo annotation approaches. PLoS One (2011) 2.11
Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives. Plant Cell (2011) 1.98
Whole-genome validation of high-information-content fingerprinting. Plant Physiol (2005) 1.98
Uneven chromosome contraction and expansion in the maize genome. Genome Res (2006) 1.96
The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species. Plant Mol Biol (2005) 1.84
Genome-scale coestimation of species and gene trees. Genome Res (2012) 1.82
Angiotensin II blockade in kidney transplant recipients. J Am Soc Nephrol (2013) 1.77
RNA-directed DNA methylation requires an AGO4-interacting member of the SPT5 elongation factor family. EMBO Rep (2009) 1.75
Reconstruction of monocotelydoneous proto-chromosomes reveals faster evolution in plants than in animals. Proc Natl Acad Sci U S A (2009) 1.71
A new opaque variant of maize by a single dominant RNA-interference-inducing transgene. Genetics (2003) 1.71
Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B. Plant J (2006) 1.70
Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations. Proc Natl Acad Sci U S A (2012) 1.66
Contiguous genomic DNA sequence comprising the 19-kD zein gene family from maize. Plant Physiol (2002) 1.63
Small- and moderate-size right-to-left shunts identified by saline contrast echocardiography are normal and unrelated to migraine headache. Chest (2010) 1.62
Chromosome-based genomics in the cereals. Chromosome Res (2007) 1.59
Galli-Galli disease: A case report with review of the literature. J Am Acad Dermatol (2008) 1.58
Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat. Plant Biotechnol J (2010) 1.56
The 'inner circle' of the cereal genomes. Curr Opin Plant Biol (2008) 1.55
Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution. Genome Res (2010) 1.55
Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set. Plant Cell (2008) 1.55
Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps. Genome (2008) 1.53
RNA interference-mediated change in protein body morphology and seed opacity through loss of different zein proteins. Plant Physiol (2010) 1.53
"Contrasting patterns of selection at Pinus pinaster Ait. Drought stress candidate genes as revealed by genetic differentiation analyses". Mol Biol Evol (2007) 1.52
Organization of the prolamin gene family provides insight into the evolution of the maize genome and gene duplications in grass species. Proc Natl Acad Sci U S A (2008) 1.51
The characteristics of heroin users entering treatment: findings from the Australian treatment outcome study (ATOS). Drug Alcohol Rev (2005) 1.50
Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. Genome Res (2005) 1.48
Next-generation annotation of prokaryotic genomes with EuGene-P: application to Sinorhizobium meliloti 2011. DNA Res (2013) 1.48
Steady-state transposon mutagenesis in inbred maize. Plant J (2005) 1.47
Role of waterlogging-responsive genes in shaping interspecific differentiation between two sympatric oak species. Tree Physiol (2011) 1.44
Medical outcomes of adolescent live kidney donors. Pediatr Transplant (2014) 1.40
Lateral gene transfer as a support for the tree of life. Proc Natl Acad Sci U S A (2012) 1.40
Inventory, evolution and expression profiling diversity of the LEA (late embryogenesis abundant) protein gene family in Arabidopsis thaliana. Plant Mol Biol (2008) 1.39
Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Genome Res (2004) 1.39
Sequence-based marker development in wheat: advances and applications to breeding. Biotechnol Adv (2011) 1.38
High-throughput sequencing of three Lemnoideae (duckweeds) chloroplast genomes from total DNA. PLoS One (2011) 1.38
Structure and evolution of the r/b chromosomal regions in rice, maize and sorghum. Genetics (2004) 1.37
Narcisse: a mirror view of conserved syntenies. Nucleic Acids Res (2007) 1.36
Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean. Plant Physiol (2008) 1.34
Chromosome-level homeology in paleopolyploid soybean (Glycine max) revealed through integration of genetic and chromosome maps. Genetics (2005) 1.33
Automated SNP detection in expressed sequence tags: statistical considerations and application to maritime pine sequences. Plant Mol Biol (2004) 1.32
On the tetraploid origin of the maize genome. Comp Funct Genomics (2004) 1.32
Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Res (2011) 1.31
Synteny between Arabidopsis thaliana and rice at the genome level: a tool to identify conservation in the ongoing rice genome sequencing project. Nucleic Acids Res (2002) 1.31
One year outcomes for heroin dependence: findings from the Australian Treatment Outcome Study (ATOS). Drug Alcohol Depend (2005) 1.31
Types and rates of sequence evolution at the high-molecular-weight glutenin locus in hexaploid wheat and its ancestral genomes. Genetics (2006) 1.31
Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation. BMC Genomics (2009) 1.31
The Arabidopsis root transcriptome by serial analysis of gene expression. Gene identification using the genome sequence. Plant Physiol (2004) 1.30
A micromethod for high throughput RNA extraction in forest trees. Biol Res (2008) 1.28
DNA barcoding of the Lemnaceae, a family of aquatic monocots. BMC Plant Biol (2010) 1.27
Genetic analysis of opaque2 modifier loci in quality protein maize. Theor Appl Genet (2008) 1.27
Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. Plant J (2013) 1.26
New insights into the origin of the B genome of hexaploid wheat: evolutionary relationships at the SPA genomic region with the S genome of the diploid relative Aegilops speltoides. BMC Genomics (2008) 1.26
Uniform selection as a primary force reducing population genetic differentiation of cavitation resistance across a species range. PLoS One (2011) 1.26
Gamma-zeins are essential for endosperm modification in quality protein maize. Proc Natl Acad Sci U S A (2010) 1.26
Life-cycle and genome of OtV5, a large DNA virus of the pelagic marine unicellular green alga Ostreococcus tauri. PLoS One (2008) 1.25
NERD, a plant-specific GW protein, defines an additional RNAi-dependent chromatin-based pathway in Arabidopsis. Mol Cell (2012) 1.24