Published in Plant J on September 29, 2006
Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces. Plant Cell (2010) 2.45
The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences. Funct Integr Genomics (2007) 1.97
Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence. BMC Genomics (2011) 1.88
Wheat genomics: present status and future prospects. Int J Plant Genomics (2008) 1.83
Chromosome-based genomics in the cereals. Chromosome Res (2007) 1.59
Targeted analysis of nucleotide and copy number variation by exon capture in allotetraploid wheat genome. Genome Biol (2011) 1.54
Gene content and virtual gene order of barley chromosome 1H. Plant Physiol (2009) 1.53
A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat. BMC Genomics (2009) 1.30
Genome size and GC content evolution of Festuca: ancestral expansion and subsequent reduction. Ann Bot (2007) 1.28
Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat. Genetics (2008) 1.24
Separating homeologs by phasing in the tetraploid wheat transcriptome. Genome Biol (2013) 1.23
Detailed recombination studies along chromosome 3B provide new insights on crossover distribution in wheat (Triticum aestivum L.). Genetics (2008) 1.19
A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R. BMC Plant Biol (2008) 1.11
A 3,000-loci transcription map of chromosome 3B unravels the structural and functional features of gene islands in hexaploid wheat. Plant Physiol (2011) 1.10
Chromosomes in the flow to simplify genome analysis. Funct Integr Genomics (2012) 1.09
First survey of the wheat chromosome 5A composition through a next generation sequencing approach. PLoS One (2011) 1.09
Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing. BMC Plant Biol (2010) 1.08
Tetraploid wheat landraces in the Mediterranean basin: taxonomy, evolution and genetic diversity. PLoS One (2012) 1.08
Structure and dynamics of retrotransposons at wheat centromeres and pericentromeres. Chromosoma (2008) 1.05
TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes. Front Plant Sci (2012) 1.04
Physical mapping and BAC-end sequence analysis provide initial insights into the flax (Linum usitatissimum L.) genome. BMC Genomics (2011) 1.02
Characterisation of the wheat (Triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes: gene expression in Pi-stressed wheat. BMC Genomics (2013) 1.01
Triticeae genomics: advances in sequence analysis of large genome cereal crops. Chromosome Res (2007) 1.01
BAC libraries from wheat chromosome 7D: efficient tool for positional cloning of aphid resistance genes. J Biomed Biotechnol (2010) 1.00
Genomic approaches for interrogating the biochemistry of medicinal plant species. Methods Enzymol (2012) 0.95
Quantitative trait loci-dependent analysis of a gene co-expression network associated with Fusarium head blight resistance in bread wheat (Triticum aestivum L.). BMC Genomics (2013) 0.95
RJPrimers: unique transposable element insertion junction discovery and PCR primer design for marker development. Nucleic Acids Res (2010) 0.95
Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat. BMC Genomics (2014) 0.94
Functional features of a single chromosome arm in wheat (1AL) determined from its structure. Funct Integr Genomics (2011) 0.93
Conserved globulin gene across eight grass genomes identify fundamental units of the loci encoding seed storage proteins. Funct Integr Genomics (2009) 0.93
A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat. Genome Biol (2013) 0.93
Chromosome arm-specific BAC end sequences permit comparative analysis of homoeologous chromosomes and genomes of polyploid wheat. BMC Plant Biol (2012) 0.92
A physical map of the short arm of wheat chromosome 1A. PLoS One (2013) 0.91
A novel resource for genomics of Triticeae: BAC library specific for the short arm of rye (Secale cereale L.) chromosome 1R (1RS). BMC Genomics (2008) 0.91
The physical map of wheat chromosome 1BS provides insights into its gene space organization and evolution. Genome Biol (2013) 0.91
Variation in crossover rates across a 3-Mb contig of bread wheat (Triticum aestivum) reveals the presence of a meiotic recombination hotspot. Chromosoma (2010) 0.91
Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications. BMC Genomics (2014) 0.90
Unique and conserved microRNAs in wheat chromosome 5D revealed by next-generation sequencing. PLoS One (2013) 0.90
wDBTF: an integrated database resource for studying wheat transcription factor families. BMC Genomics (2010) 0.90
Next-generation survey sequencing and the molecular organization of wheat chromosome 6B. DNA Res (2013) 0.89
Subgenomic analysis of microRNAs in polyploid wheat. Funct Integr Genomics (2012) 0.88
Genetic dissection of yield and its component traits using high-density composite map of wheat chromosome 3A: bridging gaps between QTLs and underlying genes. PLoS One (2013) 0.88
BAC end sequences corresponding to the B4 resistance gene cluster in common bean: a resource for markers and synteny analyses. Mol Genet Genomics (2008) 0.86
Organization and evolution of transposable elements along the bread wheat chromosome 3B. Genome Biol (2014) 0.86
Fat element-a new marker for chromosome and genome analysis in the Triticeae. Chromosome Res (2010) 0.85
Physical mapping resources for large plant genomes: radiation hybrids for wheat D-genome progenitor Aegilops tauschii. BMC Genomics (2012) 0.84
A novel linkage map of sugarcane with evidence for clustering of retrotransposon-based markers. BMC Genet (2012) 0.84
DNA repair and crossing over favor similar chromosome regions as discovered in radiation hybrid of Triticum. BMC Genomics (2012) 0.84
Gypsy, RTE and Mariner transposable elements populate Eyprepocnemis plorans genome. Genetica (2012) 0.83
Genomics approaches for crop improvement against abiotic stress. ScientificWorldJournal (2013) 0.82
The impact of Ty3-gypsy group LTR retrotransposons Fatima on B-genome specificity of polyploid wheats. BMC Plant Biol (2011) 0.82
A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block. BMC Plant Biol (2010) 0.81
Genome-wide characterization of developmental stage- and tissue-specific transcription factors in wheat. BMC Genomics (2015) 0.81
The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements. BMC Genomics (2015) 0.81
De Novo Assembled Wheat Transcriptomes Delineate Differentially Expressed Host Genes in Response to Leaf Rust Infection. PLoS One (2016) 0.80
A radiation hybrid map of chromosome 1D reveals synteny conservation at a wheat speciation locus. Funct Integr Genomics (2013) 0.80
Characterization of repetitive DNA landscape in wheat homeologous group 4 chromosomes. BMC Genomics (2015) 0.79
Exploring the diploid wheat ancestral A genome through sequence comparison at the high-molecular-weight glutenin locus region. Mol Genet Genomics (2012) 0.79
Fine mapping and marker development for the crossability gene SKr on chromosome 5BS of hexaploid wheat (Triticum aestivum L.). Genetics (2009) 0.78
A high-resolution physical map integrating an anchored chromosome with the BAC physical maps of wheat chromosome 6B. BMC Genomics (2015) 0.77
Evolutionary analysis of the CACTA DNA-transposon Caspar across wheat species using sequence comparison and in situ hybridization. Mol Genet Genomics (2010) 0.77
The Role of Vertical and Horizontal Transfer in the Evolutionary Dynamics of PIF-Like Transposable Elements in Triticeae. PLoS One (2015) 0.77
A genome-wide BAC-end sequence survey provides first insights into sweetpotato (Ipomoea batatas (L.) Lam.) genome composition. BMC Genomics (2016) 0.77
Construction and characterization of a bacterial artificial chromosome library for the hexaploid wheat line 92R137. Biomed Res Int (2014) 0.77
Chromosome-specific sequencing reveals an extensive dispensable genome component in wheat. Sci Rep (2016) 0.75
Genotyping by Sequencing Using Specific Allelic Capture to Build a High-Density Genetic Map of Durum Wheat. PLoS One (2016) 0.75
A High Resolution Radiation Hybrid Map of Wheat Chromosome 4A. Front Plant Sci (2017) 0.75
Plant exomics: concepts, applications and methodologies in crop improvement. Plant Signal Behav (2015) 0.75
Construction and characterization of three wheat bacterial artificial chromosome libraries. Int J Mol Sci (2014) 0.75
Molecular and FISH analyses of a 53-kbp intact DNA fragment inserted by biolistics in wheat (Triticum aestivum L.) genome. Plant Cell Rep (2017) 0.75
Transcriptional activity of PIF and Pong-like Class II transposable elements in Triticeae. BMC Evol Biol (2017) 0.75
Patterns of Evolutionary Trajectories and Domestication History within the Genus Hordeum Assessed by REMAP Markers. J Mol Evol (2017) 0.75
Characterization of polyploid wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism array. Plant Biotechnol J (2014) 4.02
Agriculture: Feeding the future. Nature (2013) 3.75
Identification and characterization of shared duplications between rice and wheat provide new insight into grass genome evolution. Plant Cell (2008) 3.25
A physical map of the 1-gigabase bread wheat chromosome 3B. Science (2008) 3.21
Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces. Plant Cell (2010) 2.45
Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and Aegilops). Plant Cell (2005) 2.40
Considering transposable element diversification in de novo annotation approaches. PLoS One (2011) 2.11
Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives. Plant Cell (2011) 1.98
Microsatellite-based deletion bin system for the establishment of genetic-physical map relationships in wheat (Triticum aestivum L.). Funct Integr Genomics (2004) 1.93
A worldwide bread wheat core collection arrayed in a 384-well plate. Theor Appl Genet (2007) 1.78
Reconstruction of monocotelydoneous proto-chromosomes reveals faster evolution in plants than in animals. Proc Natl Acad Sci U S A (2009) 1.71
Palaeogenomics of plants: synteny-based modelling of extinct ancestors. Trends Plant Sci (2010) 1.66
Chromosome-based genomics in the cereals. Chromosome Res (2007) 1.59
Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat. Plant Biotechnol J (2010) 1.56
The 'inner circle' of the cereal genomes. Curr Opin Plant Biol (2008) 1.55
Direct estimation of mutation rate for 10 microsatellite loci in durum wheat, Triticum turgidum (L.) Thell. ssp durum desf. Mol Biol Evol (2002) 1.40
Sequence-based marker development in wheat: advances and applications to breeding. Biotechnol Adv (2011) 1.38
Dissecting large and complex genomes: flow sorting and BAC cloning of individual chromosomes from bread wheat. Plant J (2004) 1.31
Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. Plant J (2013) 1.26
Leaf rust resistance gene Lr1, isolated from bread wheat (Triticum aestivum L.) is a member of the large psr567 gene family. Plant Mol Biol (2007) 1.24
Improved criteria and comparative genomics tool provide new insights into grass paleogenomics. Brief Bioinform (2009) 1.24
Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations. Mol Genet Genomics (2005) 1.21
Two different CC-NBS-LRR genes are required for Lr10-mediated leaf rust resistance in tetraploid and hexaploid wheat. Plant J (2009) 1.20
Detailed recombination studies along chromosome 3B provide new insights on crossover distribution in wheat (Triticum aestivum L.). Genetics (2008) 1.19
Cross-genome map based dissection of a nitrogen use efficiency ortho-metaQTL in bread wheat unravels concerted cereal genome evolution. Plant J (2011) 1.16
Ancient haplotypes resulting from extensive molecular rearrangements in the wheat A genome have been maintained in species of three different ploidy levels. Genome Res (2005) 1.15
Large intraspecific haplotype variability at the Rph7 locus results from rapid and recent divergence in the barley genome. Plant Cell (2005) 1.14
A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R. BMC Plant Biol (2008) 1.11
A 3,000-loci transcription map of chromosome 3B unravels the structural and functional features of gene islands in hexaploid wheat. Plant Physiol (2011) 1.10
FT genome A and D polymorphisms are associated with the variation of earliness components in hexaploid wheat. Theor Appl Genet (2007) 1.09
TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes. Front Plant Sci (2012) 1.04
Advanced resources for plant genomics: a BAC library specific for the short arm of wheat chromosome 1B. Plant J (2006) 1.03
Proteomic analysis of aneuploid lines in the homeologous group 1 of the hexaploid wheat cultivar Courtot. Proteomics (2004) 1.02
Combined meta-genomics analyses unravel candidate genes for the grain dietary fiber content in bread wheat (Triticum aestivum L.). Funct Integr Genomics (2010) 1.01
In silico comparative analysis reveals a mosaic conservation of genes within a novel colinear region in wheat chromosome 1AS and rice chromosome 5S. Funct Integr Genomics (2004) 1.00
Investigation of genetic diversity and population structure of common wheat cultivars in northern China using DArT markers. BMC Genet (2011) 1.00
Sequence-based analysis of translocations and inversions in bread wheat (Triticum aestivum L.). PLoS One (2013) 1.00
Multi-environment analysis and improved mapping of a yield-related QTL on chromosome 3B of wheat. Theor Appl Genet (2012) 0.99
Direct targeting and rapid isolation of BAC clones spanning a defined chromosome region. Funct Integr Genomics (2005) 0.97
Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genome. Genome Biol (2015) 0.97
LTC: a novel algorithm to improve the efficiency of contig assembly for physical mapping in complex genomes. BMC Bioinformatics (2010) 0.95
Specific patterns of gene space organisation revealed in wheat by using the combination of barley and wheat genomic resources. BMC Genomics (2010) 0.94
A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat. Genome Biol (2013) 0.93
Construction of a subgenomic BAC library specific for chromosomes 1D, 4D and 6D of hexaploid wheat. Theor Appl Genet (2004) 0.92
Intraspecific sequence comparisons reveal similar rates of non-collinear gene insertion in the B and D genomes of bread wheat. BMC Plant Biol (2012) 0.91
A physical map of the short arm of wheat chromosome 1A. PLoS One (2013) 0.91
The physical map of wheat chromosome 1BS provides insights into its gene space organization and evolution. Genome Biol (2013) 0.91
Variation in crossover rates across a 3-Mb contig of bread wheat (Triticum aestivum) reveals the presence of a meiotic recombination hotspot. Chromosoma (2010) 0.91
Map-based isolation of disease resistance genes from bread wheat: cloning in a supersize genome. Genet Res (2005) 0.89
Isolated chromosomes as a new and efficient source of DArT markers for the saturation of genetic maps. Theor Appl Genet (2010) 0.88
Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome. BMC Genomics (2012) 0.88
High level of conservation between genes coding for the GAMYB transcription factor in barley (Hordeum vulgare L.) and bread wheat (Triticum aestivum L.) collections. Theor Appl Genet (2008) 0.87
Association mapping and haplotype analysis of a 3.1-Mb genomic region involved in Fusarium head blight resistance on wheat chromosome 3BS. PLoS One (2012) 0.86
Advent of a new retrotransposon structure: the long form of the Veju elements. Genetica (2005) 0.86
Organization and evolution of transposable elements along the bread wheat chromosome 3B. Genome Biol (2014) 0.86
Fat element-a new marker for chromosome and genome analysis in the Triticeae. Chromosome Res (2010) 0.85
Wheat centromeric retrotransposons: the new ones take a major role in centromeric structure. Plant J (2013) 0.85
Single nucleotide polymorphism, genetic mapping, and expression of genes coding for the DOF wheat prolamin-box binding factor. Funct Integr Genomics (2006) 0.85
Contrasted microcolinearity and gene evolution within a homoeologous region of wheat and barley species. J Mol Evol (2008) 0.85
Physical mapping in large genomes: accelerating anchoring of BAC contigs to genetic maps through in silico analysis. Funct Integr Genomics (2007) 0.84
Morgane, a new LTR retrotransposon group, and its subfamilies in wheats. Genetica (2006) 0.84
DNA repair and crossing over favor similar chromosome regions as discovered in radiation hybrid of Triticum. BMC Genomics (2012) 0.84
Genetic structure and ecogeographical adaptation in wild barley (Hordeum chilense Roemer et Schultes) as revealed by microsatellite markers. BMC Plant Biol (2010) 0.83
Reactivity profiling: covalent modification of single nucleophile peptides for skin sensitization risk assessment. Toxicol Sci (2009) 0.83
Cytological and molecular analysis of the Hordeum vulgare-Puccinia triticina nonhost interaction. Mol Plant Microbe Interact (2003) 0.82
A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block. BMC Plant Biol (2010) 0.81
Palaeogenomics in cereals: modeling of ancestors for modern species improvement. C R Biol (2011) 0.80
Physical molecular maps of wheat chromosomes. Funct Integr Genomics (2005) 0.79
Fine mapping and marker development for the crossability gene SKr on chromosome 5BS of hexaploid wheat (Triticum aestivum L.). Genetics (2009) 0.78
High-resolution analysis of a QTL for resistance to Stagonospora nodorum glume blotch in wheat reveals presence of two distinct resistance loci in the target interval. Theor Appl Genet (2013) 0.77
Comparative analysis of the N-genome in diploid and polyploid Aegilops species. Chromosome Res (2011) 0.75
[Chemotherapy in the elderly: how and for whom?]. Bull Cancer (2008) 0.75
Exploiting the Repetitive Fraction of the Wheat Genome for High-Throughput Single-Nucleotide Polymorphism Discovery and Genotyping. Plant Genome (2016) 0.75