Published in J Proteome Res on November 29, 2010
Uncovering ubiquitin and ubiquitin-like signaling networks. Chem Rev (2011) 1.06
Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective. Biochim Biophys Acta (2013) 1.00
Comparison of 4-plex to 8-plex iTRAQ quantitative measurements of proteins in human plasma samples. J Proteome Res (2012) 0.93
Active transcriptomic and proteomic reprogramming in the C. elegans nucleotide excision repair mutant xpa-1. Nucleic Acids Res (2013) 0.89
Investigating the secretome: lessons about the cells that comprise the heart. Circ Cardiovasc Genet (2012) 0.85
Quantitative proteomics reveals the temperature-dependent proteins encoded by a series of cluster genes in thermoanaerobacter tengcongensis. Mol Cell Proteomics (2013) 0.84
Identification of a novel serum biomarker for pancreatic cancer, C4b-binding protein α-chain (C4BPA) by quantitative proteomic analysis using tandem mass tags. Br J Cancer (2016) 0.77
CONSTANd : A Normalization Method for Isobaric Labeled Spectra by Constrained Optimization. Mol Cell Proteomics (2016) 0.75
MaxReport: An Enhanced Proteomic Result Reporting Tool for MaxQuant. PLoS One (2016) 0.75
The Proteomics Identifications database: 2010 update. Nucleic Acids Res (2009) 4.47
PRIDE Converter: making proteomics data-sharing easy. Nat Biotechnol (2009) 3.22
The Ontology Lookup Service: bigger and better. Nucleic Acids Res (2010) 2.27
Comprehensive analysis of exported proteins from Mycobacterium tuberculosis H37Rv. Proteomics (2007) 2.24
The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium. Mol Cell Proteomics (2012) 2.10
SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches. Proteomics (2011) 1.63
XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results. Proteomics (2010) 1.45
Shedding light on black boxes in protein identification. Proteomics (2014) 1.39
ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics. Proteomics (2010) 1.36
compomics-utilities: an open-source Java library for computational proteomics. BMC Bioinformatics (2011) 1.28
Retracted Consensus Guidelines for CSF and Blood Biobanking for CNS Biomarker Studies. Mult Scler Int (2011) 1.26
Sam50 functions in mitochondrial intermembrane space bridging and biogenesis of respiratory complexes. Mol Cell Biol (2012) 1.22
Extracellular identification of a processed type II ComR/ComS pheromone of Streptococcus mutans. J Bacteriol (2012) 1.21
A global approach combining proteome analysis and phenotypic screening with RNA interference yields novel apoptosis regulators. Mol Cell Proteomics (2004) 1.21
Proteomic identification of secreted proteins from human skeletal muscle cells and expression in response to strength training. Am J Physiol Endocrinol Metab (2011) 1.21
Truncated structural variants of lipoarabinomannan in Mycobacterium leprae and an ethambutol-resistant strain of Mycobacterium tuberculosis. J Biol Chem (2004) 1.20
Regulation of the androgen receptor by SET9-mediated methylation. Nucleic Acids Res (2010) 1.17
Acetylation of heat shock protein 20 (Hsp20) regulates human myometrial activity. J Biol Chem (2011) 1.15
New chemical tools for investigating human mitotic kinesin Eg5. Bioorg Med Chem (2007) 1.12
Isobaric protein and peptide quantification: perspectives and issues. Expert Rev Proteomics (2010) 1.07
MiR-133b targets antiapoptotic genes and enhances death receptor-induced apoptosis. PLoS One (2012) 1.06
Perturbations of amino acid metabolism associated with glyphosate-dependent inhibition of shikimic acid metabolism affect cellular redox homeostasis and alter the abundance of proteins involved in photosynthesis and photorespiration. Plant Physiol (2011) 1.05
The preferred substrates for transglutaminase 2 in a complex wheat gluten digest are Peptide fragments harboring celiac disease T-cell epitopes. PLoS One (2010) 1.05
Validating divergent ORF annotation of the Mycobacterium leprae genome through a full translation data set and peptide identification by tandem mass spectrometry. Proteomics (2009) 1.04
Thermo-msf-parser: an open source Java library to parse and visualize Thermo Proteome Discoverer msf files. J Proteome Res (2011) 1.03
Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database. Mol Cell Proteomics (2010) 1.02
Caspase-2 is an initiator caspase responsible for pore-forming toxin-mediated apoptosis. EMBO J (2012) 1.01
Using a label-free proteomics method to identify differentially abundant proteins in closely related hypo- and hypervirulent clinical Mycobacterium tuberculosis Beijing isolates. Mol Cell Proteomics (2010) 1.00
CD147 (Basigin/Emmprin) identifies FoxP3+CD45RO+CTLA4+-activated human regulatory T cells. Blood (2011) 1.00
Characterization of a prokaryotic haemerythrin from the methanotrophic bacterium Methylococcus capsulatus (Bath). FEBS J (2005) 1.00
Renin gene polymorphisms and haplotypes, blood pressure, and responses to renin-angiotensin system inhibition. Hypertension (2007) 0.99
Rapid determination of amino acid incorporation by stable isotope labeling with amino acids in cell culture (SILAC). Rapid Commun Mass Spectrom (2007) 0.98
Shotgun proteome analysis of protein cleavage in apoptotic cells. Proteomics (2005) 0.96
Consensus definitions and application guidelines for control groups in cerebrospinal fluid biomarker studies in multiple sclerosis. Mult Scler (2013) 0.96
Discovery and initial verification of differentially abundant proteins between multiple sclerosis patients and controls using iTRAQ and SID-SRM. J Proteomics (2012) 0.95
Membrane and membrane-associated proteins in Triton X-114 extracts of Mycobacterium bovis BCG identified using a combination of gel-based and gel-free fractionation strategies. Proteomics (2008) 0.94
Developments in biobanking workflow standardization providing sample integrity and stability. J Proteomics (2013) 0.94
Expansion of multipotent stem cells from the adult human brain. PLoS One (2013) 0.93
Proteome analysis of tunicamycin-induced ER stress. Electrophoresis (2012) 0.93
Comprehensive quantitative proteome analysis of 20S proteasome subtypes from rat liver by isotope coded affinity tag and 2-D gel-based approaches. Proteomics (2006) 0.93
Distinctive mass losses of tryptic peptides generated by matrix-assisted laser desorption/ionization time-of-flight/time-of-flight. Rapid Commun Mass Spectrom (2006) 0.92
The surface-associated and secreted MopE protein of Methylococcus capsulatus (Bath) responds to changes in the concentration of copper in the growth medium. Appl Environ Microbiol (2003) 0.92
An improved strategy for selective and efficient enrichment of integral plasma membrane proteins of mycobacteria. Proteomics (2007) 0.91
A multivariate approach to reveal biomarker signatures for disease classification: application to mass spectral profiles of cerebrospinal fluid from patients with multiple sclerosis. J Proteome Res (2010) 0.91
Isobaric peptide termini labeling for MS/MS-based quantitative proteomics. J Proteome Res (2009) 0.90
The glycosylphosphatidylinositol-PLC in Trypanosoma brucei forms a linear array on the exterior of the flagellar membrane before and after activation. PLoS Pathog (2009) 0.89
Quantitative proteome analysis of cisplatin-induced apoptotic Jurkat T cells by stable isotope labeling with amino acids in cell culture, SDS-PAGE, and LC-MALDI-TOF/TOF MS. Electrophoresis (2007) 0.89
Use of stable isotope dimethyl labeling coupled to selected reaction monitoring to enhance throughput by multiplexing relative quantitation of targeted proteins. Anal Chem (2012) 0.89
Active transcriptomic and proteomic reprogramming in the C. elegans nucleotide excision repair mutant xpa-1. Nucleic Acids Res (2013) 0.89
Analysis of two IgM isotypes in Atlantic salmon and brown trout. Mol Immunol (2002) 0.88
ApoptoProteomics, an integrated database for analysis of proteomics data obtained from apoptotic cells. Mol Cell Proteomics (2011) 0.87
RN181, a novel ubiquitin E3 ligase that interacts with the KVGFFKR motif of platelet integrin alpha(IIb)beta3. Biochem Biophys Res Commun (2008) 0.87
Machine learning applications in proteomics research: how the past can boost the future. Proteomics (2014) 0.87
Distributed computing and data storage in proteomics: many hands make light work, and a stronger memory. Proteomics (2013) 0.87
Sorafenib-induced mitochondrial complex I inactivation and cell death in human neuroblastoma cells. J Proteome Res (2012) 0.87
Identification of interaction partners of the cytosolic polyproline region of CD95 ligand (CD178). FEBS Lett (2002) 0.86
Proteome analysis of apoptosis signaling by S-trityl-L-cysteine, a potent reversible inhibitor of human mitotic kinesin Eg5. Proteomics (2008) 0.86
Shotgun mass mapping of Lactobacillus species and subspecies from caries related isolates by MALDI-MS. Proteomics (2009) 0.86
Integrated chromosome 19 transcriptomic and proteomic data sets derived from glioma cancer stem-cell lines. J Proteome Res (2013) 0.86
Arachnoid cysts do not contain cerebrospinal fluid: A comparative chemical analysis of arachnoid cyst fluid and cerebrospinal fluid in adults. Cerebrospinal Fluid Res (2010) 0.86
Correlation of probiotic Lactobacillus salivarius growth phase with its cell wall-associated proteome. FEMS Microbiol Lett (2005) 0.86
Mechanisms of platelet-stimulated colon cancer invasion: role of clusterin and thrombospondin 1 in regulation of the P38MAPK-MMP-9 pathway. Carcinogenesis (2013) 0.85
Acclimation to high CO2 in maize is related to water status and dependent on leaf rank. Plant Cell Environ (2010) 0.84
High resolution quantitative proteomics of HeLa cells protein species using stable isotope labeling with amino acids in cell culture(SILAC), two-dimensional gel electrophoresis(2DE) and nano-liquid chromatograpohy coupled to an LTQ-OrbitrapMass spectrometer. Mol Cell Proteomics (2012) 0.84
DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra. J Proteome Res (2014) 0.84
Use of ENCODE resources to characterize novel proteoforms and missing proteins in the human proteome. J Proteome Res (2014) 0.83
Cloning and biochemical characterization of APIT, a new l-amino acid oxidase from Aplysia punctata. Toxicon (2005) 0.83
Identification of the 5-methylthiopentosyl substituent in Mycobacterium tuberculosis lipoarabinomannan. Angew Chem Int Ed Engl (2004) 0.83
Analysis of detergent-insoluble and whole cell lysate fractions of resting neutrophils using high-resolution mass spectrometry. J Proteome Res (2010) 0.82
Association of chromosome 19 to lung cancer genotypes and phenotypes. Cancer Metastasis Rev (2015) 0.82
Pretreatment of mass spectral profiles: application to proteomic data. Anal Chem (2007) 0.82
The proteome of the human parotid gland secretion in elderly with and without root caries. Acta Odontol Scand (2009) 0.82
Isobaric peptide termini labeling utilizing site-specific N-terminal succinylation. Anal Chem (2011) 0.82
Temporal proteome profiling of taxol-induced mitotic arrest and apoptosis. Electrophoresis (2010) 0.81
Compartmentalization regulates the interaction between the platelet integrin alpha IIb beta 3 and ICln. Br J Haematol (2008) 0.81
Viewing the proteome: how to visualize proteomics data? Proteomics (2015) 0.81
Performance of super-SILAC based quantitative proteomics for comparison of different acute myeloid leukemia (AML) cell lines. Proteomics (2014) 0.81
Protein interactions with the platelet integrin alpha(IIb) regulatory motif. Proteomics (2010) 0.81
Decimal place slope, a fast and precise method for quantifying 13C incorporation levels for detecting the metabolic activity of microbial species. Mol Cell Proteomics (2010) 0.81
Quantitative proteome analysis of detergent-resistant membranes identifies the differential regulation of protein kinase C isoforms in apoptotic T cells. Proteomics (2010) 0.81
An approach for triplex-isobaric peptide termini labeling (triplex-IPTL). Anal Chem (2013) 0.81
RuvBl2 cooperates with Ets2 to transcriptionally regulate hTERT in colon cancer. FEBS Lett (2011) 0.81
Pride-asap: automatic fragment ion annotation of identified PRIDE spectra. J Proteomics (2013) 0.80
The role of thromboxane A(2) in the pathogenesis of intrauterine growth restriction associated with maternal smoking in pregnancy. Prostaglandins Other Lipid Mediat (2011) 0.80
Schizosaccharomyces pombe Ofd2 is a nuclear 2-oxoglutarate and iron dependent dioxygenase interacting with histones. PLoS One (2011) 0.80
Quantitative proteome analysis reveals RNA processing factors as modulators of ionizing radiation-induced apoptosis in the C. elegans germline. J Proteome Res (2012) 0.79