Published in Science on November 19, 2010
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Mapping the environmental fitness landscape of a synthetic gene circuit. PLoS Comput Biol (2012) 1.31
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Memory and fitness optimization of bacteria under fluctuating environments. PLoS Genet (2014) 1.18
Dissecting specific and global transcriptional regulation of bacterial gene expression. Mol Syst Biol (2013) 1.17
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Tuning the dials of Synthetic Biology. Microbiology (2013) 1.00
Division of labour and the evolution of multicellularity. Proc Biol Sci (2011) 0.99
Stress-induced remodeling of the bacterial proteome. Curr Biol (2014) 0.98
Nonlinear fitness landscape of a molecular pathway. PLoS Genet (2011) 0.98
Constant growth rate can be supported by decreasing energy flux and increasing aerobic glycolysis. Cell Rep (2014) 0.98
High variation of fluorescence protein maturation times in closely related Escherichia coli strains. PLoS One (2013) 0.98
Bacterial growth laws reflect the evolutionary importance of energy efficiency. Proc Natl Acad Sci U S A (2014) 0.98
Nucleotide degradation and ribose salvage in yeast. Mol Syst Biol (2013) 0.98
Ribosome degradation in growing bacteria. EMBO Rep (2011) 0.97
The inoculum effect and band-pass bacterial response to periodic antibiotic treatment. Mol Syst Biol (2012) 0.96
How fast-growing bacteria robustly tune their ribosome concentration to approximate growth-rate maximization. FEBS J (2015) 0.96
Use of adaptive laboratory evolution to discover key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal medium. Appl Environ Microbiol (2014) 0.95
Direct observation of single stationary-phase bacteria reveals a surprisingly long period of constant protein production activity. Proc Natl Acad Sci U S A (2013) 0.95
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Bending forces plastically deform growing bacterial cell walls. Proc Natl Acad Sci U S A (2014) 0.93
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Dislocation-mediated growth of bacterial cell walls. Proc Natl Acad Sci U S A (2012) 0.90
Tunable stochastic pulsing in the Escherichia coli multiple antibiotic resistance network from interlinked positive and negative feedback loops. PLoS Comput Biol (2013) 0.89
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Growth-dependent bacterial susceptibility to ribosome-targeting antibiotics. Mol Syst Biol (2015) 0.89
Inflating bacterial cells by increased protein synthesis. Mol Syst Biol (2015) 0.87
Regulation of crp gene expression by the catabolite repressor/activator, Cra, in Escherichia coli. J Mol Microbiol Biotechnol (2014) 0.87
A growth-rate composition formula for the growth of E.coli on co-utilized carbon substrates. Mol Syst Biol (2015) 0.87
Modular composition of gene transcription networks. PLoS Comput Biol (2014) 0.87
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Lowering GTP level increases survival of amino acid starvation but slows growth rate for Bacillus subtilis cells lacking (p)ppGpp. J Bacteriol (2014) 0.84
Population dynamics of bacterial persistence. PLoS One (2013) 0.84
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Functional validation of putative toxin-antitoxin genes from the Gram-positive pathogen Streptococcus pneumoniae: phd-doc is the fourth bona-fide operon. Front Microbiol (2014) 0.83
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Systems and photosystems: cellular limits of autotrophic productivity in cyanobacteria. Front Bioeng Biotechnol (2015) 0.82
The significance of translation regulation in the stress response. BMC Genomics (2013) 0.82
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Survival kinetics of starving bacteria is biphasic and density-dependent. PLoS Comput Biol (2015) 0.81
A model for sigma factor competition in bacterial cells. PLoS Comput Biol (2014) 0.81
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DNA sequence evolution with neighbor-dependent mutation. J Comput Biol (2003) 1.76
Distinct changes of genomic biases in nucleotide substitution at the time of Mammalian radiation. Mol Biol Evol (2003) 1.72
Coordination of bacterial proteome with metabolism by cyclic AMP signalling. Nature (2013) 1.70
Nonlinear protein degradation and the function of genetic circuits. Proc Natl Acad Sci U S A (2005) 1.65
Genomics-aided structure prediction. Proc Natl Acad Sci U S A (2012) 1.63
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Substantial regional variation in substitution rates in the human genome: importance of GC content, gene density, and telomere-specific effects. J Mol Evol (2005) 1.45
Small RNAs establish gene expression thresholds. Curr Opin Microbiol (2008) 1.44
Sequential establishment of stripe patterns in an expanding cell population. Science (2011) 1.44
Stochasticity and traffic jams in the transcription of ribosomal RNA: Intriguing role of termination and antitermination. Proc Natl Acad Sci U S A (2008) 1.41
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Toxic protein expression in Escherichia coli using a rhamnose-based tightly regulated and tunable promoter system. Biotechniques (2006) 1.35
The innate growth bistability and fitness landscapes of antibiotic-resistant bacteria. Science (2013) 1.34
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Sources and sinks: a stochastic model of evolution in heterogeneous environments. Phys Rev Lett (2010) 1.24
Mechanically probing the folding pathway of single RNA molecules. Biophys J (2003) 1.23
Dissecting the specificity of protein-protein interaction in bacterial two-component signaling: orphans and crosstalks. PLoS One (2011) 1.20
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Deterministic characterization of stochastic genetic circuits. Proc Natl Acad Sci U S A (2007) 1.15
Coevolutionary signals across protein lineages help capture multiple protein conformations. Proc Natl Acad Sci U S A (2013) 1.14
Quantifying the sequence-function relation in gene silencing by bacterial small RNAs. Proc Natl Acad Sci U S A (2011) 1.11
Need-based activation of ammonium uptake in Escherichia coli. Mol Syst Biol (2012) 1.10
Regional and time-resolved mutation patterns of the human genome. Bioinformatics (2004) 1.08
Hybrid alignment: high-performance with universal statistics. Bioinformatics (2002) 1.07
Designing sequential transcription logic: a simple genetic circuit for conditional memory. Syst Synth Biol (2007) 1.07
Co-evolving motions at protein-protein interfaces of two-component signaling systems identified by covariance analysis. Biochemistry (2008) 1.06
Dynamics of competitive evolution on a smooth landscape. Phys Rev Lett (2003) 1.05
Lysophospholipid flipping across the Escherichia coli inner membrane catalyzed by a transporter (LplT) belonging to the major facilitator superfamily. J Biol Chem (2005) 1.03
Cytotoxic constituents of Aspergillus terreus from the rhizosphere of Opuntia versicolor of the Sonoran Desert. J Nat Prod (2003) 1.01
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Computational modeling of phosphotransfer complexes in two-component signaling. Methods Enzymol (2010) 0.97
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A novel method distinguishes between mutation rates and fixation biases in patterns of single-nucleotide substitution. J Mol Evol (2005) 0.93
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Gene length may contribute to graded transcriptional responses in the Drosophila embryo. Dev Biol (2011) 0.90
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On ribosome load, codon bias and protein abundance. PLoS One (2012) 0.89
Stripe formation in bacterial systems with density-suppressed motility. Phys Rev Lett (2012) 0.88
Overcoming fluctuation and leakage problems in the quantification of intracellular 2-oxoglutarate levels in Escherichia coli. Appl Environ Microbiol (2011) 0.86
A mechanobiochemical mechanism for monooriented chromosome oscillation in mitosis. Proc Natl Acad Sci U S A (2007) 0.84
An integrated mechanobiochemical feedback mechanism describes chromosome motility from prometaphase to anaphase in mitosis. Proc Natl Acad Sci U S A (2008) 0.82
Reversible adenylylation of glutamine synthetase is dynamically counterbalanced during steady-state growth of Escherichia coli. J Mol Biol (2010) 0.82
Direct coupling analysis for protein contact prediction. Methods Mol Biol (2014) 0.80
Predicting the spatiotemporal dynamics of hair follicle patterns in the developing mouse. Proc Natl Acad Sci U S A (2014) 0.78
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Control of Transposon-Mediated Directed Mutation by the Escherichia coli Phosphoenolpyruvate:Sugar Phosphotransferase System. J Mol Microbiol Biotechnol (2015) 0.78
Expression and Characterization of a Novel Thermo-Alkalistable Lipase from Hyperthermophilic Bacterium Thermotoga maritima. Appl Biochem Biotechnol (2015) 0.77
Analytical study of the effect of recombination on evolution via DNA shuffling. Phys Rev E Stat Nonlin Soft Matter Phys (2004) 0.76
Genetic engineering of the phosphocarrier protein NPr of the Escherichia coli phosphotransferase system selectively improves sugar uptake activity. J Biol Chem (2012) 0.75