Published in Appl Environ Microbiol on December 03, 2010
Population structure of the Yersinia pseudotuberculosis complex according to multilocus sequence typing. Environ Microbiol (2011) 1.64
Reproductive clonality of pathogens: a perspective on pathogenic viruses, bacteria, fungi, and parasitic protozoa. Proc Natl Acad Sci U S A (2012) 1.26
Population structure and evolution of non-O1/non-O139 Vibrio cholerae by multilocus sequence typing. PLoS One (2013) 1.00
Homology analysis of pathogenic Yersinia species Yersinia enterocolitica, Yersinia pseudotuberculosis, and Yersinia pestis based on multilocus sequence typing. J Clin Microbiol (2013) 0.88
Genetics and evolution of Yersinia pseudotuberculosis O-specific polysaccharides: a novel pattern of O-antigen diversity. FEMS Microbiol Rev (2017) 0.75
Typing and clustering of Yersinia pseudotuberculosis isolates by restriction fragment length polymorphism analysis using insertion sequences. J Clin Microbiol (2014) 0.75
Genomic Insights into a Sustained National Outbreak of Yersinia pseudotuberculosis. Genome Biol Evol (2016) 0.75
Inference of population structure using multilocus genotype data. Genetics (2000) 147.76
Consed: a graphical tool for sequence finishing. Genome Res (1998) 59.36
eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacteriol (2004) 17.92
Sex and virulence in Escherichia coli: an evolutionary perspective. Mol Microbiol (2006) 14.53
Genome sequence of Yersinia pestis, the causative agent of plague. Nature (2001) 14.36
Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis. Proc Natl Acad Sci U S A (1999) 10.34
SplitsTree: analyzing and visualizing evolutionary data. Bioinformatics (1998) 9.87
Genome sequence of Yersinia pestis KIM. J Bacteriol (2002) 7.14
Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis. Proc Natl Acad Sci U S A (2004) 5.09
Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old. Infect Genet Evol (2002) 4.96
Estimating recombinational parameters in Streptococcus pneumoniae from multilocus sequence typing data. Genetics (2000) 4.61
Characterization of encapsulated and noncapsulated Haemophilus influenzae and determination of phylogenetic relationships by multilocus sequence typing. J Clin Microbiol (2003) 4.47
Split decomposition: a new and useful approach to phylogenetic analysis of distance data. Mol Phylogenet Evol (1992) 3.60
The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081. PLoS Genet (2006) 3.33
The Yersinia Ysc-Yop 'type III' weaponry. Nat Rev Mol Cell Biol (2002) 3.22
A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences. Comput Appl Biosci (1996) 3.11
A widespread outbreak of Yersinia pseudotuberculosis O:3 infection from iceberg lettuce. J Infect Dis (2004) 2.09
The Yersinia high-pathogenicity island: an iron-uptake island. Microbes Infect (2001) 1.79
Geographical heterogeneity between Far Eastern and Western countries in prevalence of the virulence plasmid, the superantigen Yersinia pseudotuberculosis-derived mitogen, and the high-pathogenicity island among Yersinia pseudotuberculosis strains. J Clin Microbiol (2001) 1.62
Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium. J Bacteriol (2010) 1.60
An outbreak of gastrointestinal illness and erythema nodosum from grated carrots contaminated with Yersinia pseudotuberculosis. J Infect Dis (2006) 1.55
MULTICOMP: a program for preparing sequence data for phylogenetic analysis. Comput Appl Biosci (1994) 1.51
Yersinia pseudotuberculosis harbors a type IV pilus gene cluster that contributes to pathogenicity. Infect Immun (2002) 1.49
The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever. PLoS Genet (2007) 1.43
Multiple outbreaks of Yersinia pseudotuberculosis infections in Finland. J Clin Microbiol (2004) 1.26
Use of O-antigen gene cluster-specific PCRs for the identification and O-genotyping of Yersinia pseudotuberculosis and Yersinia pestis. J Clin Microbiol (2003) 1.23
Exploring the concept of clonality in bacteria. Methods Mol Biol (2004) 1.20
Molecular evolution of the Escherichia coli chromosome. VI. Two regions of high effective recombination. Genetics (2003) 1.20
Yersinia pseudotuberculosis infection contracted through water contaminated by a wild animal. J Clin Microbiol (1988) 1.17
The superantigen gene ypm is located in an unstable chromosomal locus of Yersinia pseudotuberculosis. J Bacteriol (2002) 1.14
Yersinia pseudotuberculosis causing a large outbreak associated with carrots in Finland, 2006. Epidemiol Infect (2009) 1.05
A simplified antigenic scheme for serotyping of Yersinia pseudotuberculosis: phenotypic characterization of reference strains and preparation of O and H factor sera. Contrib Microbiol Immunol (1995) 1.03
Horizontal transfer of the high-pathogenicity island of Yersinia pseudotuberculosis. J Bacteriol (2005) 1.02
Superantigen YPMa exacerbates the virulence of Yersinia pseudotuberculosis in mice. Infect Immun (2000) 0.99
Frequent recombination and low level of clonality within Salmonella enterica subspecies I. Microbiology (2006) 0.97
Relationship of Yersinia pseudotuberculosis O antigens IA, IIA, and IVB: the IIA gene cluster was derived from that of IVB. Infect Immun (2002) 0.94
Sudden onset of pseudotuberculosis in humans, France, 2004-05. Emerg Infect Dis (2008) 0.92
Yersinia pseudotuberculosis O:1 traced to raw carrots, Finland. Emerg Infect Dis (2008) 0.88
Restriction endonuclease analysis of virulence plasmids for molecular epidemiology of Yersinia pseudotuberculosis infections. J Clin Microbiol (1994) 0.87
Transmission of Yersinia pseudotuberculosis in the pork production chain from farm to slaughterhouse. Appl Environ Microbiol (2008) 0.87
Purification, characterization and cloning of a novel variant of the superantigen Yersinia pseudotuberculosis-derived mitogen. FEBS Lett (1997) 0.85
Acute mesenteric lymphadenitis due to Yersinia pseudotuberculosis lacking a virulence plasmid. J Clin Microbiol (1991) 0.85
Direct isolation of Yersinia pseudotuberculosis from fresh water in Japan. Appl Environ Microbiol (1992) 0.84
Epidemiology of Y. pseudotuberculosis in Germany, 1983-1993. Contrib Microbiol Immunol (1995) 0.84
O antigen gene clusters of Yersinia pseudotuberculosis. Adv Exp Med Biol (2003) 0.82
Molecular epidemiology of Yersinia pseudotuberculosis. Adv Exp Med Biol (2003) 0.78
The O-specific polysaccharide structure and biosynthetic gene cluster of Yersinia pseudotuberculosis serotype O:11. Carbohydr Res (2009) 0.77
Sex and virulence in Escherichia coli: an evolutionary perspective. Mol Microbiol (2006) 14.53
Sequential Monte Carlo without likelihoods. Proc Natl Acad Sci U S A (2007) 3.42
A recalibrated molecular clock and independent origins for the cholera pandemic clones. PLoS One (2008) 3.16
Norovirus recombination in ORF1/ORF2 overlap. Emerg Infect Dis (2005) 2.41
Norovirus recombination. J Gen Virol (2007) 2.22
Mutation rates of spoligotypes and variable numbers of tandem repeat loci in Mycobacterium tuberculosis. Infect Genet Evol (2010) 2.15
Recombination within the pandemic norovirus GII.4 lineage. J Virol (2013) 1.93
Derivation of Escherichia coli O157:H7 from its O55:H7 precursor. PLoS One (2010) 1.90
Parallel independent evolution of pathogenicity within the genus Yersinia. Proc Natl Acad Sci U S A (2014) 1.83
Global population structure and evolution of Bordetella pertussis and their relationship with vaccination. MBio (2014) 1.76
Emergence of a new multidrug-resistant serotype X variant in an epidemic clone of Shigella flexneri. J Clin Microbiol (2009) 1.71
The epidemiological fitness cost of drug resistance in Mycobacterium tuberculosis. Proc Natl Acad Sci U S A (2009) 1.71
Evolution of seventh cholera pandemic and origin of 1991 epidemic, Latin America. Emerg Infect Dis (2010) 1.66
Population structure of the Yersinia pseudotuberculosis complex according to multilocus sequence typing. Environ Microbiol (2011) 1.64
Rapid increase in pertactin-deficient Bordetella pertussis isolates, Australia. Emerg Infect Dis (2014) 1.43
Single-nucleotide-polymorphism typing and genetic relationships of Salmonella enterica serovar Typhi isolates. J Clin Microbiol (2007) 1.43
Rates of mutation and host transmission for an Escherichia coli clone over 3 years. PLoS One (2011) 1.40
Molecular chaperone TRAP1 regulates a metabolic switch between mitochondrial respiration and aerobic glycolysis. Proc Natl Acad Sci U S A (2013) 1.37
Genetic diversity and molecular typing of Listeria monocytogenes in China. BMC Microbiol (2012) 1.35
spolTools: online utilities for analyzing spoligotypes of the Mycobacterium tuberculosis complex. Bioinformatics (2008) 1.35
Multiple-locus variable-number tandem-repeat analysis of Salmonella enterica serovar Typhi. J Clin Microbiol (2009) 1.29
Estimating change rates of genetic markers using serial samples: applications to the transposon IS6110 in Mycobacterium tuberculosis. Theor Popul Biol (2003) 1.26
Vibrio cholerae pathogenic clones. Emerg Infect Dis (2005) 1.24
Use of O-antigen gene cluster-specific PCRs for the identification and O-genotyping of Yersinia pseudotuberculosis and Yersinia pestis. J Clin Microbiol (2003) 1.23
The inference of phased haplotypes for the immunoglobulin H chain V region gene loci by analysis of VDJ gene rearrangements. J Immunol (2011) 1.23
Newly emerging clones of Bordetella pertussis carrying prn2 and ptxP3 alleles implicated in Australian pertussis epidemic in 2008-2010. J Infect Dis (2012) 1.22
Population structure of Helicobacter pylori among ethnic groups in Malaysia: recent acquisition of the bacterium by the Malay population. BMC Microbiol (2009) 1.17
Insight into evolution of Bordetella pertussis from comparative genomic analysis: evidence of vaccine-driven selection. Mol Biol Evol (2010) 1.15
Minimum core genome sequence typing of bacterial pathogens: a unified approach for clinical and public health microbiology. J Clin Microbiol (2013) 1.15
Identification and characterization of a novel Shigella flexneri serotype Yv in China. PLoS One (2013) 1.14
Models of deletion for visualizing bacterial variation: an application to tuberculosis spoligotypes. BMC Bioinformatics (2008) 1.14
Population structure, origins and evolution of major Salmonella enterica clones. Infect Genet Evol (2009) 1.13
A novel plasmid-encoded serotype conversion mechanism through addition of phosphoethanolamine to the O-antigen of Shigella flexneri. PLoS One (2012) 1.12
Method for assessing the similarity between subsets of the T cell receptor repertoire. J Immunol Methods (2007) 1.09
Pyogenic liver abscess caused by Klebsiella pneumoniae genetic serotype K1 in Japan. J Infect Chemother (2009) 1.08
Development of multiplex PCR assays for the identification of the 33 serotypes of Streptococcus suis. PLoS One (2013) 1.08
Isolation and genomic characterization of SfI, a serotype-converting bacteriophage of Shigella flexneri. BMC Microbiol (2013) 1.05
Impact of homoplasy on variable numbers of tandem repeats and spoligotypes in Mycobacterium tuberculosis. Infect Genet Evol (2011) 1.04
Multi-locus variable number tandem repeat analysis of 7th pandemic Vibrio cholerae. BMC Microbiol (2012) 1.04
Differential involvement of the hypermethylator phenotype in hereditary and sporadic colorectal cancers with high-frequency microsatellite instability. Genes Chromosomes Cancer (2002) 1.04
Investigation of the enteric pathogenic potential of oral Campylobacter concisus strains isolated from patients with inflammatory bowel disease. PLoS One (2012) 1.03
Bordetella pertussis clones identified by multilocus variable-number tandem-repeat analysis. Emerg Infect Dis (2010) 1.03
Population structure and evolution of non-O1/non-O139 Vibrio cholerae by multilocus sequence typing. PLoS One (2013) 1.00
The prevalence and polymorphisms of zonula occluden toxin gene in multiple Campylobacter concisus strains isolated from saliva of patients with inflammatory bowel disease and controls. PLoS One (2013) 1.00
Conditions for the evolution of gene clusters in bacterial genomes. PLoS Comput Biol (2010) 0.98
Selection and emergence of pertussis toxin promoter ptxP3 allele in the evolution of Bordetella pertussis. Infect Genet Evol (2012) 0.98
Development of a multiplex PCR assay targeting O-antigen modification genes for molecular serotyping of Shigella flexneri. J Clin Microbiol (2011) 0.98
Genome-wide analysis of single nucleotide polymorphisms in Bordetella pertussis using comparative genomic sequencing. Res Microbiol (2008) 0.97
Frequent recombination and low level of clonality within Salmonella enterica subspecies I. Microbiology (2006) 0.97
A novel Escherichia coli O157:H7 clone causing a major hemolytic uremic syndrome outbreak in China. PLoS One (2012) 0.97
Genesis of a novel Shigella flexneri serotype by sequential infection of serotype-converting bacteriophages SfX and SfI. BMC Microbiol (2011) 0.96
Optimal replication of poliovirus within cells. Am Nat (2005) 0.95
Evolutionary changes of the flhDC flagellar master operon in Shigella strains. J Bacteriol (2005) 0.94
Isolation and characterization of cytotoxic, aggregative Citrobacter freundii. PLoS One (2012) 0.94
Molecular analysis of non-O1/non-O139 Vibrio cholerae isolated from hospitalised patients in China. BMC Microbiol (2013) 0.94
Genetic relationships of phage types and single nucleotide polymorphism typing of Salmonella enterica Serovar Typhimurium. J Clin Microbiol (2012) 0.93
O-antigen structure of Shigella flexneri serotype Yv and effect of the lpt-O gene variation on phosphoethanolamine modification of S. flexneri O-antigens. Glycobiology (2013) 0.93
Characterization of Shiga toxin-producing Escherichia coli isolated from healthy pigs in China. BMC Microbiol (2014) 0.93
Identification of genes and genomic islands correlated with high pathogenicity in Streptococcus suis using whole genome tiling microarrays. PLoS One (2011) 0.93
Interpreting genotype cluster sizes of Mycobacterium tuberculosis isolates typed with IS6110 and spoligotyping. Infect Genet Evol (2008) 0.92
Shiga toxin-producing Escherichia coli in yaks (Bos grunniens) from the Qinghai-Tibetan Plateau, China. PLoS One (2013) 0.91
Genomic diversity and adaptation of Salmonella enterica serovar Typhimurium from analysis of six genomes of different phage types. BMC Genomics (2013) 0.90
Epizootiological study of tick-borne encephalitis virus infection in Japan. J Vet Med Sci (2010) 0.90
Sequence analysis of the Escherichia coli O15 antigen gene cluster and development of a PCR assay for rapid detection of intestinal and extraintestinal pathogenic E. coli O15 strains. J Clin Microbiol (2005) 0.90
Emergence of a novel Shigella flexneri serotype 1d in China. Diagn Microbiol Infect Dis (2012) 0.89
Group-theoretic models of the inversion process in bacterial genomes. J Math Biol (2013) 0.88
A model-based Bayesian estimation of the rate of evolution of VNTR loci in Mycobacterium tuberculosis. PLoS Comput Biol (2012) 0.88
Exact vs. approximate computation: reconciling different estimates of Mycobacterium tuberculosis epidemiological parameters. Genetics (2014) 0.88
Viral mutation rates: modelling the roles of within-host viral dynamics and the trade-off between replication fidelity and speed. Proc Biol Sci (2012) 0.87
Identification of an O-acyltransferase gene (oacB) that mediates 3- and 4-O-acetylation of rhamnose III in Shigella flexneri O antigens. J Bacteriol (2014) 0.87
Detection of Helicobacteraceae in intestinal biopsies of children with Crohn's disease. Helicobacter (2010) 0.86
Adaptation of multilocus sequencing for studying variation within a major clone: evolutionary relationships of Salmonella enterica serovar Typhimurium. Genetics (2005) 0.86
Genomic portrait of the evolution and epidemic spread of a recently emerged multidrug-resistant Shigella flexneri clone in China. J Clin Microbiol (2014) 0.86
Rapid and accurate typing of Bordetella pertussis targeting genes encoding acellular vaccine antigens using real time PCR and High Resolution Melt analysis. J Microbiol Methods (2009) 0.86
Dissemination and serotype modification potential of pSFxv_2, an O-antigen PEtN modification plasmid in Shigella flexneri. Glycobiology (2013) 0.86
Importation of the major pilin TcpA gene and frequent recombination drive the divergence of the Vibrio pathogenicity island in Vibrio cholerae. FEMS Microbiol Lett (2008) 0.85
Similarities of Kawasaki disease and Yersinia pseudotuberculosis infection epidemiology. Pediatr Infect Dis J (2007) 0.85
Fluorescent amplified fragment length polymorphism analysis of Salmonella enterica serovar typhimurium reveals phage-type- specific markers and potential for microarray typing. J Clin Microbiol (2002) 0.83
The distribution of insertion sequences in the genome of Shigella flexneri strain 2457T. FEMS Microbiol Lett (2007) 0.83
Molecular basis of the indole-negative reaction in Shigella strains: extensive damages to the tna operon by insertion sequences. J Bacteriol (2004) 0.83
The internal transcribed spacer region, a new tool for use in species differentiation and delineation of systematic relationships within the Campylobacter genus. Appl Environ Microbiol (2010) 0.82
Computational bacterial genome-wide analysis of phylogenetic profiles reveals potential virulence genes of Streptococcus agalactiae. PLoS One (2011) 0.82
Small cell carcinoma of the urinary bladder: a contemporary review with a special focus on bladder-sparing treatments. Expert Rev Anticancer Ther (2013) 0.81
Single nucleotide polymorphism typing of global Salmonella enterica serovar Typhi isolates by use of a hairpin primer real-time PCR assay. J Clin Microbiol (2010) 0.81
Comparison of two methods of bacterial DNA extraction from human fecal samples contaminated with Clostridium perfringens, Staphylococcus aureus, Salmonella Typhimurium, and Campylobacter jejuni. Jpn J Infect Dis (2014) 0.81
Trade-offs in resource allocation in the intracellular life-cycle of hepatitis C virus. J Theor Biol (2010) 0.80
Global transcriptional and phenotypic analyses of Escherichia coli O157:H7 strain Xuzhou21 and its pO157_Sal cured mutant. PLoS One (2013) 0.80
Genetic (sero) typing of Yersinia pseudotuberculosis. Adv Exp Med Biol (2003) 0.80
Familial outbreak of Yersinia enterocolitica serotype O9 biotype 2. J Infect Chemother (2010) 0.79