PubRank

Sophia Tsoka

Author PubWeight™ 40.72‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Expansion of the BioCyc collection of pathway/genome databases to 160 genomes. Nucleic Acids Res 2005 7.13
2 Mapping cis- and trans-regulatory effects across multiple tissues in twins. Nat Genet 2012 6.97
3 Modeling the percolation of annotation errors in a database of protein sequences. Bioinformatics 2002 4.12
4 Evaluation of annotation strategies using an entire genome sequence. Bioinformatics 2003 2.66
5 Genome evolution reveals biochemical networks and functional modules. Proc Natl Acad Sci U S A 2003 2.08
6 Computational analysis of Plasmodium falciparum metabolism: organizing genomic information to facilitate drug discovery. Genome Res 2004 1.92
7 The phylogenetic extent of metabolic enzymes and pathways. Genome Res 2003 1.92
8 Percolation of annotation errors through hierarchically structured protein sequence databases. Math Biosci 2005 1.27
9 A systems model for immune cell interactions unravels the mechanism of inflammation in human skin. PLoS Comput Biol 2010 1.07
10 Beyond 100 genomes. Genome Biol 2003 1.06
11 Genome-wide expression patterns in physiological cardiac hypertrophy. BMC Genomics 2010 0.89
12 CoGenT++: an extensive and extensible data environment for computational genomics. Bioinformatics 2005 0.89
13 Integrative biology approach identifies cytokine targeting strategies for psoriasis. Sci Transl Med 2014 0.89
14 Metabolic homeostasis is maintained in myocardial hibernation by adaptive changes in the transcriptome and proteome. J Mol Cell Cardiol 2011 0.88
15 Transcriptome classification reveals molecular subtypes in psoriasis. BMC Genomics 2012 0.87
16 Functional and topological properties in hepatocellular carcinoma transcriptome. PLoS One 2012 0.86
17 Functional Genomics Assistant (FUGA): a toolbox for the analysis of complex biological networks. BMC Res Notes 2011 0.85
18 Robustness of the p53 network and biological hackers. FEBS Lett 2005 0.84
19 Module detection in complex networks using integer optimisation. Algorithms Mol Biol 2010 0.83
20 Gene network and proteomic analyses of cardiac responses to pathological and physiological stress. Circ Cardiovasc Genet 2013 0.81
21 Promoter complexity and tissue-specific expression of stress response components in Mytilus galloprovincialis, a sessile marine invertebrate species. PLoS Comput Biol 2010 0.79
22 Stratification of co-evolving genomic groups using ranked phylogenetic profiles. BMC Bioinformatics 2009 0.78
23 Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum. PLoS One 2013 0.77
24 Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins. BMC Evol Biol 2011 0.76
25 MINLP models for the synthesis of optimal peptide tags and downstream protein processing. Biotechnol Prog 2005 0.75