Published in PLoS One on July 04, 2013
Finding and evaluating community structure in networks. Phys Rev E Stat Nonlin Soft Matter Phys (2004) 24.12
The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. Nucleic Acids Res (2004) 8.79
A probabilistic functional network of yeast genes. Science (2004) 8.35
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature (2010) 5.79
The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science (2007) 4.43
The Top 10 fungal pathogens in molecular plant pathology. Mol Plant Pathol (2012) 4.03
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res (2006) 3.74
Heading for disaster: Fusarium graminearum on cereal crops. Mol Plant Pathol (2004) 3.01
Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks. BMC Bioinformatics (2005) 2.83
Complex discovery from weighted PPI networks. Bioinformatics (2009) 2.74
Graph-based analysis and visualization of experimental results with ONDEX. Bioinformatics (2006) 2.60
The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion. PLoS Genet (2009) 2.29
Detecting functional modules in the yeast protein-protein interaction network. Bioinformatics (2006) 2.20
PHI-base update: additions to the pathogen host interaction database. Nucleic Acids Res (2007) 1.69
Comparative genomics of MAP kinase and calcium-calcineurin signalling components in plant and human pathogenic fungi. Fungal Genet Biol (2009) 1.66
PHI-base: a new database for pathogen host interactions. Nucleic Acids Res (2006) 1.64
BarleyBase/PLEXdb. Methods Mol Biol (2007) 1.56
A phenome-based functional analysis of transcription factors in the cereal head blight fungus, Fusarium graminearum. PLoS Pathog (2011) 1.54
FGDB: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearum. Nucleic Acids Res (2006) 1.49
Nutrient profiling reveals potent inducers of trichothecene biosynthesis in Fusarium graminearum. Fungal Genet Biol (2009) 1.48
Global gene regulation by Fusarium transcription factors Tri6 and Tri10 reveals adaptations for toxin biosynthesis. Mol Microbiol (2009) 1.44
FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum. Nucleic Acids Res (2010) 1.35
Functional analysis of the kinome of the wheat scab fungus Fusarium graminearum. PLoS Pathog (2011) 1.31
The genomic organization of plant pathogenicity in Fusarium species. Curr Opin Plant Biol (2010) 1.28
Chromosome complement of the fungal plant pathogen Fusarium graminearum based on genetic and physical mapping and cytological observations. Genetics (2005) 1.26
The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis. PLoS One (2012) 1.19
The pathogen-host interactions database (PHI-base) provides insights into generic and novel themes of pathogenicity. Mol Plant Microbe Interact (2006) 1.13
Large-scale gene disruption in Magnaporthe oryzae identifies MC69, a secreted protein required for infection by monocot and dicot fungal pathogens. PLoS Pathog (2012) 1.11
Host-induced gene silencing: a tool for understanding fungal host interaction and for developing novel disease control strategies. Mol Plant Pathol (2011) 1.10
Functional analyses of heterotrimeric G protein G alpha and G beta subunits in Gibberella zeae. Microbiology (2008) 1.08
Tri1 in Fusarium graminearum encodes a P450 oxygenase. Appl Environ Microbiol (2004) 0.99
FPPI: Fusarium graminearum protein-protein interaction database. J Proteome Res (2009) 0.97
Strategies for managing Fusarium head blight and deoxynivalenol accumulation in wheat. Int J Food Microbiol (2007) 0.94
A network approach to predict pathogenic genes for Fusarium graminearum. PLoS One (2010) 0.94
Studying plant-pathogen interactions in the genomics era: beyond molecular Koch's postulates to systems biology. Annu Rev Phytopathol (2010) 0.93
Data integration for plant genomics--exemplars from the integration of Arabidopsis thaliana databases. Brief Bioinform (2009) 0.92
CLM1 of Fusarium graminearum encodes a longiborneol synthase required for culmorin production. Appl Environ Microbiol (2009) 0.91
Fusarium graminearum TRI14 is required for high virulence and DON production on wheat but not for DON synthesis in vitro. J Agric Food Chem (2005) 0.90
Characterisation of the Fusarium graminearum-Wheat Floral Interaction. J Pathog (2011) 0.88
OmniMapFree: a unified tool to visualise and explore sequenced genomes. BMC Bioinformatics (2011) 0.83
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes. Nucleic Acids Res (2005) 7.13
Mapping cis- and trans-regulatory effects across multiple tissues in twins. Nat Genet (2012) 6.97
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature (2010) 5.79
The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science (2007) 4.43
Modeling the percolation of annotation errors in a database of protein sequences. Bioinformatics (2002) 4.12
The Top 10 fungal pathogens in molecular plant pathology. Mol Plant Pathol (2012) 4.03
Evaluation of annotation strategies using an entire genome sequence. Bioinformatics (2003) 2.66
Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis. PLoS Genet (2011) 2.58
Genome evolution reveals biochemical networks and functional modules. Proc Natl Acad Sci U S A (2003) 2.08
Computational analysis of Plasmodium falciparum metabolism: organizing genomic information to facilitate drug discovery. Genome Res (2004) 1.92
The phylogenetic extent of metabolic enzymes and pathways. Genome Res (2003) 1.92
PHI-base update: additions to the pathogen host interaction database. Nucleic Acids Res (2007) 1.69
PHI-base: a new database for pathogen host interactions. Nucleic Acids Res (2006) 1.64
Evidence behind the WHO guidelines: hospital care for children: what is the evidence that BCG vaccination should not be used in HIV-infected children? J Trop Pediatr (2009) 1.45
Clustering of Pseudomonas aeruginosa transcriptomes from planktonic cultures, developing and mature biofilms reveals distinct expression profiles. BMC Genomics (2006) 1.44
Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat. Plant Physiol (2011) 1.42
Percolation of annotation errors through hierarchically structured protein sequence databases. Math Biosci (2005) 1.27
The wheat mitogen-activated protein kinases TaMPK3 and TaMPK6 are differentially regulated at multiple levels during compatible disease interactions with Mycosphaerella graminicola. Plant Physiol (2008) 1.25
One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use. Phytopathology (2013) 1.19
The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis. PLoS One (2012) 1.19
The pathogen-host interactions database (PHI-base) provides insights into generic and novel themes of pathogenicity. Mol Plant Microbe Interact (2006) 1.13
Molecular characterization and functional analysis of MgNLP, the sole NPP1 domain-containing protein, from the fungal wheat leaf pathogen Mycosphaerella graminicola. Mol Plant Microbe Interact (2009) 1.10
p-Coumaroylnoradrenaline, a novel plant metabolite implicated in tomato defense against pathogens. J Biol Chem (2003) 1.09
A systems model for immune cell interactions unravels the mechanism of inflammation in human skin. PLoS Comput Biol (2010) 1.07
Barley stripe mosaic virus-mediated tools for investigating gene function in cereal plants and their pathogens: virus-induced gene silencing, host-mediated gene silencing, and virus-mediated overexpression of heterologous protein. Plant Physiol (2012) 1.07
The infection biology of Fusarium graminearum: defining the pathways of spikelet to spikelet colonisation in wheat ears. Fungal Biol (2010) 1.07
Beyond 100 genomes. Genome Biol (2003) 1.06
Mycosphaerella graminicola LysM effector-mediated stealth pathogenesis subverts recognition through both CERK1 and CEBiP homologues in wheat. Mol Plant Microbe Interact (2014) 1.05
Phenotypic and genetic analysis of the Triticum monococcum-Mycosphaerella graminicola interaction. New Phytol (2008) 1.02
Fusarium graminearum gene deletion mutants map1 and tri5 reveal similarities and differences in the pathogenicity requirements to cause disease on Arabidopsis and wheat floral tissue. New Phytol (2008) 1.02
Defining the predicted protein secretome of the fungal wheat leaf pathogen Mycosphaerella graminicola. PLoS One (2012) 1.02
DArT markers: diversity analyses, genomes comparison, mapping and integration with SSR markers in Triticum monococcum. BMC Genomics (2009) 0.99
The complex interactions between host immunity and non-biotrophic fungal pathogens of wheat leaves. J Plant Physiol (2010) 0.98
Agrobacterium tumefaciens-mediated transformation of Leptosphaeria spp. and Oculimacula spp. with the reef coral gene DsRed and the jellyfish gene gfp. FEMS Microbiol Lett (2005) 0.96
Same-sex couple perceptions of family support: a consensual qualitative study. Fam Process (2004) 0.95
Characterization of the sterol 14α-demethylases of Fusarium graminearum identifies a novel genus-specific CYP51 function. New Phytol (2013) 0.93
Data integration for plant genomics--exemplars from the integration of Arabidopsis thaliana databases. Brief Bioinform (2009) 0.92
A combined ¹H nuclear magnetic resonance and electrospray ionization-mass spectrometry analysis to understand the basal metabolism of plant-pathogenic Fusarium spp. Mol Plant Microbe Interact (2010) 0.91
The velvet gene, FgVe1, affects fungal development and positively regulates trichothecene biosynthesis and pathogenicity in Fusarium graminearum. Mol Plant Pathol (2011) 0.90
Genome-wide expression patterns in physiological cardiac hypertrophy. BMC Genomics (2010) 0.89
Integrative biology approach identifies cytokine targeting strategies for psoriasis. Sci Transl Med (2014) 0.89
CoGenT++: an extensive and extensible data environment for computational genomics. Bioinformatics (2005) 0.89
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis. BMC Bioinformatics (2011) 0.89
A role for topoisomerase I in Fusarium graminearum and F. culmorum pathogenesis and sporulation. Mol Plant Microbe Interact (2010) 0.89
High-resolution melting analysis of cDNA-derived PCR amplicons for rapid and cost-effective identification of novel alleles in barley. Theor Appl Genet (2009) 0.88
NPR1 and EDS11 contribute to host resistance against Fusarium culmorum in Arabidopsis buds and flowers. Mol Plant Pathol (2008) 0.88
Metabolic homeostasis is maintained in myocardial hibernation by adaptive changes in the transcriptome and proteome. J Mol Cell Cardiol (2011) 0.88
Characterisation of the Fusarium graminearum-Wheat Floral Interaction. J Pathog (2011) 0.88
Lack of the plant signalling component SGT1b enhances disease resistance to Fusarium culmorum in Arabidopsis buds and flowers. New Phytol (2009) 0.88
Transcriptome classification reveals molecular subtypes in psoriasis. BMC Genomics (2012) 0.87
Exploitation of genomics in fungicide research: current status and future perspectives. Mol Plant Pathol (2012) 0.86
Functional and topological properties in hepatocellular carcinoma transcriptome. PLoS One (2012) 0.86
Functional Genomics Assistant (FUGA): a toolbox for the analysis of complex biological networks. BMC Res Notes (2011) 0.85
Robustness of the p53 network and biological hackers. FEBS Lett (2005) 0.84
Module detection in complex networks using integer optimisation. Algorithms Mol Biol (2010) 0.83
OmniMapFree: a unified tool to visualise and explore sequenced genomes. BMC Bioinformatics (2011) 0.83
Understanding the sensory experiences of young people with autism spectrum disorder: a preliminary investigation. Aust Occup Ther J (2013) 0.82
2-D DIGE reveals changes in wheat xylanase inhibitor protein families due to Fusarium graminearum DeltaTri5 infection and grain development. Proteomics (2010) 0.82
A partial chromosomal deletion caused by random plasmid integration resulted in a reduced virulence phenotype in Fusarium graminearum. Mol Plant Microbe Interact (2010) 0.81
Gene network and proteomic analyses of cardiac responses to pathological and physiological stress. Circ Cardiovasc Genet (2013) 0.81
AIGO: towards a unified framework for the analysis and the inter-comparison of GO functional annotations. BMC Bioinformatics (2011) 0.80
Identifying variation in resistance to the take-all fungus, Gaeumannomyces graminis var. tritici, between different ancestral and modern wheat species. BMC Plant Biol (2014) 0.79
Dominant-negative interference with defence signalling by truncation mutations of the tomato Cf-9 disease resistance gene. Plant J (2006) 0.79
Promoter complexity and tissue-specific expression of stress response components in Mytilus galloprovincialis, a sessile marine invertebrate species. PLoS Comput Biol (2010) 0.79
Stratification of co-evolving genomic groups using ranked phylogenetic profiles. BMC Bioinformatics (2009) 0.78
FcStuA from Fusarium culmorum controls wheat foot and root rot in a toxin dispensable manner. PLoS One (2013) 0.78
Mutations in the Arabidopsis homoserine kinase gene DMR1 confer enhanced resistance to Fusarium culmorum and F. graminearum. BMC Plant Biol (2014) 0.78
Large scale molecular dynamics simulation of native and mutant dihydropteroate synthase-sulphanilamide complexes suggests the molecular basis for dihydropteroate synthase drug resistance. Philos Trans A Math Phys Eng Sci (2005) 0.76
Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins. BMC Evol Biol (2011) 0.76
Identification of intra-helical bifurcated H-bonds as a new type of gate in K+ channels. J Am Chem Soc (2017) 0.75
Characterization of two unusual features of resistance to soilborne cereal mosaic virus in hexaploid wheat: leakiness and gradual elimination of viral coat protein from infected root tissues. Mol Plant Microbe Interact (2009) 0.75
Erratum: Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen. Sci Rep (2016) 0.75
The induction of mycotoxins by trichothecene producing Fusarium species. Methods Mol Biol (2012) 0.75
Identification and characterization of a novel efficient resistance response to the furoviruses SBWMV and SBCMV in barley. Mol Plant Microbe Interact (2008) 0.75
MINLP models for the synthesis of optimal peptide tags and downstream protein processing. Biotechnol Prog (2005) 0.75
Physical signs for the general dental practitioner. Case 72. Dermatomyositis. Dent Update (2010) 0.75