PubRank

Roman A Zubarev

Author PubWeight™ 83.50‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 ModifiComb, a new proteomic tool for mapping substoichiometric post-translational modifications, finding novel types of modifications, and fingerprinting complex protein mixtures. Mol Cell Proteomics 2006 2.03
2 De novo peptide sequencing and identification with precision mass spectrometry. J Proteome Res 2007 1.95
3 Proteomics-grade de novo sequencing approach. J Proteome Res 2005 1.76
4 Extent of modifications in human proteome samples and their effect on dynamic range of analysis in shotgun proteomics. Mol Cell Proteomics 2006 1.65
5 Improving protein identification using complementary fragmentation techniques in fourier transform mass spectrometry. Mol Cell Proteomics 2005 1.52
6 Development of autoantibodies against muscle-specific FHL1 in severe inflammatory myopathies. J Clin Invest 2015 1.51
7 Electron capture dissociation of polypeptides in a three-dimensional quadrupole ion trap: Implementation and first results. J Am Soc Mass Spectrom 2005 1.47
8 Myeloid-derived suppressor cells express the death receptor Fas and apoptose in response to T cell-expressed FasL. Blood 2011 1.47
9 Electron capture dissociation proceeds with a low degree of intramolecular migration of peptide amide hydrogens. J Am Chem Soc 2008 1.40
10 Hydrogen rearrangement to and from radical z fragments in electron capture dissociation of peptides. J Am Soc Mass Spectrom 2006 1.33
11 Prodynorphin mutations cause the neurodegenerative disorder spinocerebellar ataxia type 23. Am J Hum Genet 2010 1.27
12 New data base-independent, sequence tag-based scoring of peptide MS/MS data validates Mowse scores, recovers below threshold data, singles out modified peptides, and assesses the quality of MS/MS techniques. Mol Cell Proteomics 2005 1.23
13 C alpha-C backbone fragmentation dominates in electron detachment dissociation of gas-phase polypeptide polyanions. Chemistry 2005 1.22
14 Mass spectrometric analysis of asparagine deamidation and aspartate isomerization in polypeptides. Electrophoresis 2010 1.22
15 Heightened immune response to autocitrullinated Porphyromonas gingivalis peptidylarginine deiminase: a potential mechanism for breaching immunologic tolerance in rheumatoid arthritis. Ann Rheum Dis 2013 1.18
16 Electron ionization dissociation of singly and multiply charged peptides. J Am Chem Soc 2009 1.18
17 Side-chain losses in electron capture dissociation to improve peptide identification. Anal Chem 2007 1.17
18 Rapid and deep human proteome analysis by single-dimension shotgun proteomics. Mol Cell Proteomics 2013 1.16
19 In silico instrumental response correction improves precision of label-free proteomics and accuracy of proteomics-based predictive models. Mol Cell Proteomics 2013 1.14
20 Analytical utility of small neutral losses from reduced species in electron capture dissociation studied using SwedECD database. Anal Chem 2008 1.10
21 Letter: the diagnostic value of amino acid side-chain losses in electron capture dissociation of polypeptides. Comment on: "Can the (M(.)-X) region in electron capture dissociation provide reliable information on amino acid composition of polypeptides?", Eur. J. Mass Spectrom. 8, 461-469 (2002). Eur J Mass Spectrom (Chichester, Eng) 2003 1.08
22 Fragmentation of peptides in MALDI in-source decay mediated by hydrogen radicals. Anal Chem 2005 1.08
23 Distinguishing of Ile/Leu amino acid residues in the PP3 protein by (hot) electron capture dissociation in Fourier transform ion cyclotron resonance mass spectrometry. Anal Chem 2003 1.07
24 Facile disulfide bond cleavage in gaseous peptide and protein cations by ultraviolet photodissociation at 157 nm. Angew Chem Int Ed Engl 2005 1.05
25 Complete characterization of posttranslational modification sites in the bovine milk protein PP3 by tandem mass spectrometry with electron capture dissociation as the last stage. Anal Chem 2003 1.05
26 Optimizing heterologous protein production in the periplasm of E. coli by regulating gene expression levels. Microb Cell Fact 2013 1.04
27 MS analysis of rheumatoid arthritic synovial tissue identifies specific citrullination sites on fibrinogen. Proteomics Clin Appl 2010 1.02
28 Toward proteome-scale identification and quantification of isoaspartyl residues in biological samples. J Proteome Res 2009 1.01
29 Proteomic pathway analysis reveals inflammation increases myeloid-derived suppressor cell resistance to apoptosis. Mol Cell Proteomics 2010 1.01
30 Electron capture dissociation distinguishes a single D-amino acid in a protein and probes the tertiary structure. J Am Soc Mass Spectrom 2004 1.01
31 The exosome associates cotranscriptionally with the nascent pre-mRNP through interactions with heterogeneous nuclear ribonucleoproteins. Mol Biol Cell 2009 0.99
32 Bifurcating fragmentation behavior of gas-phase tryptic peptide dications in collisional activation. J Am Soc Mass Spectrom 2008 0.98
33 SwedCAD, a database of annotated high-mass accuracy MS/MS spectra of tryptic peptides. J Proteome Res 2007 0.97
34 Complementary sequence preferences of electron-capture dissociation and vibrational excitation in fragmentation of polypeptide polycations. Angew Chem Int Ed Engl 2006 0.95
35 Structural basis of SUFU-GLI interaction in human Hedgehog signalling regulation. Acta Crystallogr D Biol Crystallogr 2013 0.95
36 Ionization energies of multiply protonated polypeptides obtained by tandem ionization in Fourier transform mass spectrometers. J Mass Spectrom 2002 0.94
37 Urinary prognostic biomarkers and classification of IgA nephropathy by high resolution mass spectrometry coupled with liquid chromatography. PLoS One 2013 0.93
38 PhosTShunter: a fast and reliable tool to detect phosphorylated peptides in liquid chromatography Fourier transform tandem mass spectrometry data sets. J Proteome Res 2006 0.92
39 On studying protein phosphorylation patterns using bottom-up LC-MS/MS: the case of human alpha-casein. Analyst 2007 0.92
40 Electron capture dissociation of weakly bound polypeptide polycationic complexes. Rapid Commun Mass Spectrom 2002 0.90
41 Dissociation of peptide ions by fast atom bombardment in a quadrupole ion trap. Rapid Commun Mass Spectrom 2005 0.89
42 Distinguishing and quantifying peptides and proteins containing D-amino acids by tandem mass spectrometry. Anal Chem 2005 0.88
43 C57BL/6 mice need MHC class II Aq to develop collagen-induced arthritis dependent on autoreactive T cells. Ann Rheum Dis 2012 0.88
44 Liquid chromatography at critical conditions: comprehensive approach to sequence-dependent retention time prediction. Anal Chem 2006 0.88
45 Alzheimer's disease and mild cognitive impairment are associated with elevated levels of isoaspartyl residues in blood plasma proteins. J Alzheimers Dis 2011 0.87
46 Zwitterionic states in gas-phase polypeptide ions revealed by 157-nm ultra-violet photodissociation. Chemistry 2006 0.87
47 Immunoaffinity enrichments followed by mass spectrometric detection for studying global protein tyrosine phosphorylation. J Proteome Res 2008 0.86
48 De novo sequencing of peptides secreted by the skin glands of the Caucasian Green Frog Rana ridibunda. Rapid Commun Mass Spectrom 2008 0.86
49 Toward a comprehensive characterization of the phosphotyrosine proteome. Cell Signal 2011 0.85
50 Two dimensional mass mapping as a general method of data representation in comprehensive analysis of complex molecular mixtures. Anal Chem 2009 0.85
51 Heme binding in gas-phase holo-myoglobin cations: distal becomes proximal? J Am Soc Mass Spectrom 2011 0.84
52 Optimization of immunoaffinity enrichment and detection: toward a comprehensive characterization of the phosphotyrosine proteome of K562 cells by liquid chromatography-mass spectrometry. Analyst 2011 0.84
53 Blood plasma IgG Fc glycans are significantly altered in Alzheimer's disease and progressive mild cognitive impairment. J Alzheimers Dis 2014 0.83
54 Drug target identification from protein dynamics using quantitative pathway analysis. J Proteome Res 2011 0.83
55 Retracted Dominant suppression of inflammation by glycan-hydrolyzed IgG. Proc Natl Acad Sci U S A 2013 0.83
56 The effects of 5-fluorouracil on the proteome of colon cancer cells. J Proteome Res 2013 0.82
57 Sequence scrambling in shotgun proteomics is negligible. J Am Soc Mass Spectrom 2011 0.82
58 A direct comparison of protein structure in the gas and solution phase: the Trp-cage. J Phys Chem B 2007 0.82
59 Binding of Pro-Gly-Pro at the active site of leukotriene A4 hydrolase/aminopeptidase and development of an epoxide hydrolase selective inhibitor. Proc Natl Acad Sci U S A 2014 0.82
60 Electron capture dissociation of polypeptides using a 3 Tesla Fourier transform ion cyclotron resonance mass spectrometer. Rapid Commun Mass Spectrom 2002 0.81
61 Empirical approach to false discovery rate estimation in shotgun proteomics. Rapid Commun Mass Spectrom 2010 0.81
62 Room-temperature infrared spectroscopy combined with mass spectrometry distinguishes gas-phase protein isomers. Angew Chem Int Ed Engl 2009 0.80
63 High-performance liquid chromatography--mass spectrometry and electron-capture dissociation tandem mass spectrometry of osteocalcin. Determination of gamma-carboxyglutamic acid residues. J Chromatogr A 2002 0.80
64 Separation of polypeptides by isoelectric point focusing in electrospray-friendly solution using a multiple-junction capillary fractionator. Anal Chem 2012 0.79
65 Coaxial multi-electrode cell ('O-trap') for high-sensitivity detection at a multiple frequency in Fourier transform ion cyclotron resonance mass spectrometry: main design and modeling results. Rapid Commun Mass Spectrom 2006 0.79
66 Chemosensory proteins, major salivary factors in caterpillar mandibular glands. Insect Biochem Mol Biol 2012 0.79
67 Backbone carbonyl group basicities are related to gas-phase fragmentation of peptides and protein folding. Angew Chem Int Ed Engl 2007 0.79
68 Mass spectrometric de novo sequencing of natural non-tryptic peptides: comparing peculiarities of collision-induced dissociation (CID) and high energy collision dissociation (HCD). Rapid Commun Mass Spectrom 2014 0.79
69 Relative specificities of water and ammonia losses from backbone fragments in collision-activated dissociation. J Proteome Res 2007 0.78
70 Shotgun brain proteomics reveals early molecular signature in presymptomatic mouse model of Alzheimer's disease. J Alzheimers Dis 2013 0.78
71 Characterization of an N-acylated glucagon-like peptide-1 derivative by electron capture dissociation. J Am Soc Mass Spectrom 2005 0.78
72 Physicochemical properties determining the detection probability of tryptic peptides in Fourier transform mass spectrometry. A correlation study. Anal Chem 2004 0.78
73 Introducing an Asp-Pro linker in the synthesis of random one-bead-one-compound hexapeptide libraries compatible with ESI-MS analysis. ACS Comb Sci 2012 0.78
74 Cytotoxic and Pro-inflammatory Effects of Metal-based Nanoparticles on THP-1 Monocytes Characterized by Combined Proteomics Approaches. J Proteome Res 2016 0.78
75 Collision-induced dissociation fragmentation inside disulfide C-terminal loops of natural non-tryptic peptides. J Am Soc Mass Spectrom 2013 0.77
76 ATP enhances neuronal differentiation of PC12 cells by activating PKCα interactions with cytoskeletal proteins. J Proteome Res 2010 0.77
77 Novel cysteine tags for the sequencing of non-tryptic disulfide peptides of anurans: ESI-MS study of fragmentation efficiency. J Am Soc Mass Spectrom 2011 0.77
78 Shifted-basis technique improves accuracy of peak position determination in Fourier transform mass spectrometry. J Am Soc Mass Spectrom 2004 0.77
79 Proteomics Reveals a Role for Attachment in Monocyte Differentiation into Efficient Proinflammatory Macrophages. J Proteome Res 2015 0.77
80 Calibration function for the Orbitrap FTMS accounting for the space charge effect. J Am Soc Mass Spectrom 2010 0.77
81 Fragmentation of positively-charged biological ions activated with a beam of high-energy cations. Anal Chem 2013 0.77
82 Diagnostic urinary proteome profile for immunoglobulin a nephropathy. Iran J Kidney Dis 2015 0.76
83 Brain proteomics supports the role of glutamate metabolism and suggests other metabolic alterations in protein l-isoaspartyl methyltransferase (PIMT)-knockout mice. J Proteome Res 2013 0.76
84 Effects of peptide backbone amide-to-ester bond substitution on the cleavage frequency in electron capture dissociation and collision-activated dissociation. J Am Soc Mass Spectrom 2011 0.76
85 Establishing a Proteomics-Based Monocyte Assay To Assess Differential Innate Immune Activation Responses. J Proteome Res 2016 0.76
86 In silico proteome-wide amino aCid and elemental composition (PACE) analysis of expression proteomics data provides a fingerprint of dominant metabolic processes. Genomics Proteomics Bioinformatics 2013 0.75
87 On the accuracy of polypeptide masses measured in a linear ion trap. Rapid Commun Mass Spectrom 2005 0.75
88 N-terminal peptide sequence repetition influences the kinetics of backbone fragmentation: a manifestation of the Jahn-Teller effect? J Am Soc Mass Spectrom 2013 0.75
89 Are the majority of a(2)-ions cyclic? Phys Chem Chem Phys 2010 0.75
90 Porcine P2 myelin protein primary structure and bound fatty acids determined by mass spectrometry. Anal Bioanal Chem 2010 0.75
91 LC-MS/MS with 2D mass mapping of skin secretions' peptides as a reliable tool for interspecies identification inside Rana esculenta complex. Peptides 2012 0.75
92 Membrane-assisted isoelectric focusing device as a micropreparative fractionator for two-dimensional shotgun proteomics. Anal Chem 2014 0.75
93 Carbonyl charge solvation patterns may relate to fragmentation classes in collision-activated dissociation. J Am Soc Mass Spectrom 2012 0.75