Two modes of binding of DinI to RecA filament provide a new insight into the regulation of SOS response by DinI protein.

PubWeight™: 0.77‹?›

🔗 View Article (PMC 3089025)

Published in J Mol Biol on March 31, 2011

Authors

Vitold E Galkin1, Rachel L Britt, Lukas B Bane, Xiong Yu, Michael M Cox, Edward H Egelman

Author Affiliations

1: Department of Biochemistry and Molecular Genetics, University of Virginia, Jordan Hall 6007, 1340 Jefferson Park Avenue, Charlottesville, VA 22908, USA. galkin@virginia.edu

Articles cited by this

UCSF Chimera--a visualization system for exploratory research and analysis. J Comput Chem (2004) 112.47

SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields. J Struct Biol (1996) 22.89

The SOS regulatory system of Escherichia coli. Cell (1982) 16.90

Autodigestion of lexA and phage lambda repressors. Proc Natl Acad Sci U S A (1984) 5.94

Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures. Nature (2008) 5.85

Structure of the recA protein-ADP complex. Nature (1992) 5.33

Identification of additional genes belonging to the LexA regulon in Escherichia coli. Mol Microbiol (2000) 5.08

A robust algorithm for the reconstruction of helical filaments using single-particle methods. Ultramicroscopy (2000) 5.01

Homologous pairing and DNA strand-exchange proteins. Annu Rev Biochem (1994) 3.27

RecA protein: structure, function, and role in recombinational DNA repair. Prog Nucleic Acid Res Mol Biol (1997) 3.11

Identification of high affinity binding sites for LexA which define new DNA damage-inducible genes in Escherichia coli. J Mol Biol (1994) 2.33

Function of nucleoside triphosphate and polynucleotide in Escherichia coli recA protein-directed cleavage of phage lambda repressor. J Biol Chem (1981) 2.00

ATP-mediated conformational changes in the RecA filament. Structure (2003) 1.79

Solution structure of DinI provides insight into its mode of RecA inactivation. Protein Sci (2000) 1.61

Continuous association of Escherichia coli single-stranded DNA binding protein with stable complexes of recA protein and single-stranded DNA. Biochemistry (1986) 1.54

Escherichia coli RecX inhibits RecA recombinase and coprotease activities in vitro and in vivo. J Biol Chem (2002) 1.49

Assembly and disassembly of RecA protein filaments occur at opposite filament ends. Relationship to DNA strand exchange. J Biol Chem (1990) 1.42

A RecA filament capping mechanism for RecX protein. Mol Cell (2004) 1.34

Crystal structures of Mycobacterium tuberculosis RecA and its complex with ADP-AlF(4): implications for decreased ATPase activity and molecular aggregation. Nucleic Acids Res (2000) 1.24

The DinI protein stabilizes RecA protein filaments. J Biol Chem (2004) 1.18

The hRad51 and RecA proteins show significant differences in cooperative binding to single-stranded DNA. J Mol Biol (1999) 1.16

The C terminus of the Escherichia coli RecA protein modulates the DNA binding competition with single-stranded DNA-binding protein. J Biol Chem (2003) 1.15

A model for the abrogation of the SOS response by an SOS protein: a negatively charged helix in DinI mimics DNA in its interaction with RecA. Genes Dev (2001) 1.14

Crystal structures of Escherichia coli RecA in a compressed helical filament. J Mol Biol (2004) 1.14

Properties of the duplex DNA-dependent ATPase activity of Escherichia coli RecA protein and its role in branch migration. Proc Natl Acad Sci U S A (1987) 1.12

Hydrolysis of nucleoside triphosphates catalyzed by the recA protein of Escherichia coli. Steady state kinetic analysis of ATP hydrolysis. J Biol Chem (1981) 1.10

Multicopy suppressors of the cold-sensitive phenotype of the pcsA68 (dinD68) mutation in Escherichia coli. J Bacteriol (1996) 1.09

Magnesium ion-dependent activation of the RecA protein involves the C terminus. J Biol Chem (2003) 1.08

Transcriptional and mutational analyses of the Streptomyces lividans recX gene and its interference with RecA activity. J Bacteriol (2000) 1.08

Role of the recA-related gene adjacent to the recA gene in Pseudomonas aeruginosa. J Bacteriol (1993) 1.07

Crystal structures of Escherichia coli RecA in complex with MgADP and MnAMP-PNP. Biochemistry (2004) 1.06

C-terminal truncated Escherichia coli RecA protein RecA5327 has enhanced binding affinities to single- and double-stranded DNAs. J Mol Biol (1992) 1.04

Physical interactions between DinI and RecA nucleoprotein filament for the regulation of SOS mutagenesis. EMBO J (2001) 1.04

Crystal structures of Mycobacterium smegmatis RecA and its nucleotide complexes. J Bacteriol (2003) 1.02

Inhibition of RecA protein by the Escherichia coli RecX protein: modulation by the RecA C terminus and filament functional state. J Biol Chem (2004) 0.99

Complexes of RecA with LexA and RecX differentiate between active and inactive RecA nucleoprotein filaments. J Mol Biol (2003) 0.98

Photocross-links between single-stranded DNA and Escherichia coli RecA protein map to loops L1 (amino acid residues 157-164) and L2 (amino acid residues 195-209). J Biol Chem (1995) 0.97

On the in vivo function of the RecA ATPase. J Mol Biol (1999) 0.95

Crystallographic identification of an ordered C-terminal domain and a second nucleotide-binding site in RecA: new insights into allostery. Nucleic Acids Res (2006) 0.94

Structural basis for inhibition of homologous recombination by the RecX protein. EMBO J (2008) 0.92

recA-dependent DNA repair processes. Bioessays (1989) 0.90

Differential proximity probing of two DNA binding sites in the Escherichia coli recA protein using photo-cross-linking methods. Biochemistry (1996) 0.87

Removal of the RecA C-terminus results in a conformational change in the RecA-DNA filament. J Struct Biol (1991) 0.81

Homologous DNA pairing domain peptides of RecA protein: intrinsic propensity to form beta-structures and filaments. J Mol Biol (1998) 0.80

Articles by these authors

Structural basis of membrane invagination by F-BAR domains. Cell (2008) 5.41

Outcome of the first electron microscopy validation task force meeting. Structure (2012) 4.35

Stabilization of RAD51 nucleoprotein filaments by the C-terminal region of BRCA2. Nat Struct Mol Biol (2007) 3.45

Type IV pilus structure by cryo-electron microscopy and crystallography: implications for pilus assembly and functions. Mol Cell (2006) 3.36

SSB as an organizer/mobilizer of genome maintenance complexes. Crit Rev Biochem Mol Biol (2008) 3.19

The bacterial RecA protein and the recombinational DNA repair of stalled replication forks. Annu Rev Biochem (2001) 3.03

Novel pro- and anti-recombination activities of the Bloom's syndrome helicase. Genes Dev (2007) 2.82

Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA. Proc Natl Acad Sci U S A (2002) 2.50

Atomic model of a myosin filament in the relaxed state. Nature (2005) 2.49

The stalk region of dynamin drives the constriction of dynamin tubes. Nat Struct Mol Biol (2004) 2.20

Helical structure of the needle of the type III secretion system of Shigella flexneri. J Biol Chem (2003) 2.15

The Rad51/RadA N-terminal domain activates nucleoprotein filament ATPase activity. Structure (2006) 2.00

Structure and disassembly of filaments formed by the ESCRT-III subunit Vps24. Structure (2008) 1.95

Structural polymorphism in F-actin. Nat Struct Mol Biol (2010) 1.89

Assembly of Weibel-Palade body-like tubules from N-terminal domains of von Willebrand factor. Proc Natl Acad Sci U S A (2008) 1.81

ATP-mediated conformational changes in the RecA filament. Structure (2003) 1.79

A new internal mode in F-actin helps explain the remarkable evolutionary conservation of actin's sequence and structure. Curr Biol (2002) 1.70

Actin-destabilizing factors disrupt filaments by means of a time reversal of polymerization. Proc Natl Acad Sci U S A (2004) 1.70

BRCA2 BRC motifs bind RAD51-DNA filaments. Proc Natl Acad Sci U S A (2005) 1.68

ADF/cofilin use an intrinsic mode of F-actin instability to disrupt actin filaments. J Cell Biol (2003) 1.68

The structure of bacterial ParM filaments. Nat Struct Mol Biol (2007) 1.66

Remodeling of actin filaments by ADF/cofilin proteins. Proc Natl Acad Sci U S A (2011) 1.60

Directed evolution of ionizing radiation resistance in Escherichia coli. J Bacteriol (2009) 1.60

High-resolution cryo-EM structure of the F-actin-fimbrin/plastin ABD2 complex. Proc Natl Acad Sci U S A (2008) 1.59

Enhancement of RAD51 recombinase activity by the tumor suppressor PALB2. Nat Struct Mol Biol (2010) 1.55

Flexibility of the rings: structural asymmetry in the DnaB hexameric helicase. J Mol Biol (2002) 1.48

Divergence of quaternary structures among bacterial flagellar filaments. Science (2008) 1.46

A comparative analysis of Dmc1 and Rad51 nucleoprotein filaments. Nucleic Acids Res (2008) 1.46

The active form of DNA polymerase V is UmuD'(2)C-RecA-ATP. Nature (2009) 1.43

Helicity in electron microscopy images-a comment on Wang TF, Chen LT and Wang AH 2008 BioEssays 30:48-56. Bioessays (2008) 1.41

MDA5 assembles into a polar helical filament on dsRNA. Proc Natl Acad Sci U S A (2012) 1.37

SSB protein limits RecOR binding onto single-stranded DNA. J Biol Chem (2007) 1.35

RecA acts in trans to allow replication of damaged DNA by DNA polymerase V. Nature (2006) 1.34

The Methanobacterium thermoautotrophicum MCM protein can form heptameric rings. EMBO Rep (2002) 1.34

Actin structure and function: what we still do not understand. J Biol Chem (2007) 1.34

A RecA filament capping mechanism for RecX protein. Mol Cell (2004) 1.34

Crystal structure of the Deinococcus radiodurans single-stranded DNA-binding protein suggests a mechanism for coping with DNA damage. Proc Natl Acad Sci U S A (2004) 1.33

Structural architecture of the CARMA1/Bcl10/MALT1 signalosome: nucleation-induced filamentous assembly. Mol Cell (2013) 1.31

Preserving genome integrity: the DdrA protein of Deinococcus radiodurans R1. PLoS Biol (2004) 1.31

Stabilization of RAD-51-DNA filaments via an interaction domain in Caenorhabditis elegans BRCA2. Proc Natl Acad Sci U S A (2007) 1.30

How does ATP hydrolysis control actin's associations? Proc Natl Acad Sci U S A (2002) 1.29

Salmonella SipA polymerizes actin by stapling filaments with nonglobular protein arms. Science (2003) 1.27

Organized unidirectional waves of ATP hydrolysis within a RecA filament. PLoS Biol (2005) 1.26

SV40 large T antigen hexamer structure: domain organization and DNA-induced conformational changes. Curr Biol (2002) 1.23

DdrB protein, an alternative Deinococcus radiodurans SSB induced by ionizing radiation. J Biol Chem (2009) 1.23

Regulation of single-stranded DNA binding by the C termini of Escherichia coli single-stranded DNA-binding (SSB) protein. J Biol Chem (2010) 1.22

Evolution of extreme resistance to ionizing radiation via genetic adaptation of DNA repair. Elife (2014) 1.22

C-terminal deletions of the Escherichia coli RecA protein. Characterization of in vivo and in vitro effects. J Biol Chem (2003) 1.22

Rad51 and Rad54 ATPase activities are both required to modulate Rad51-dsDNA filament dynamics. Nucleic Acids Res (2007) 1.21

Situational repair of replication forks: roles of RecG and RecA proteins. J Biol Chem (2003) 1.20

ParA2, a Vibrio cholerae chromosome partitioning protein, forms left-handed helical filaments on DNA. Proc Natl Acad Sci U S A (2010) 1.19

Issues of resolution and polymorphism in single-particle reconstruction. J Struct Biol (2003) 1.19

The DinI protein stabilizes RecA protein filaments. J Biol Chem (2004) 1.18

Actin filaments as tension sensors. Curr Biol (2012) 1.18

The DinI and RecX proteins are competing modulators of RecA function. J Biol Chem (2004) 1.17

DNA polymerase V and RecA protein, a minimal mutasome. Mol Cell (2005) 1.16

The structure of a filamentous bacteriophage. J Mol Biol (2006) 1.16

Structural polymorphism of Methanothermobacter thermautotrophicus MCM. J Mol Biol (2005) 1.16

The Rad51-dependent pairing of long DNA substrates is stabilized by replication protein A. J Biol Chem (2002) 1.16

The C terminus of the Escherichia coli RecA protein modulates the DNA binding competition with single-stranded DNA-binding protein. J Biol Chem (2003) 1.15

Opening of tandem calponin homology domains regulates their affinity for F-actin. Nat Struct Mol Biol (2010) 1.13

Homologous-pairing activity of the Bacillus subtilis bacteriophage SPP1 replication protein G35P. J Biol Chem (2002) 1.13

The bacterial protein SipA polymerizes G-actin and mimics muscle nebulin. Nat Struct Biol (2002) 1.13

The utrophin actin-binding domain binds F-actin in two different modes: implications for the spectrin superfamily of proteins. J Cell Biol (2002) 1.12

RecFOR and RecOR as distinct RecA loading pathways. J Biol Chem (2008) 1.11

Coronin-1A stabilizes F-actin by bridging adjacent actin protomers and stapling opposite strands of the actin filament. J Mol Biol (2007) 1.11

Each actin subunit has three nebulin binding sites: implications for steric blocking. Curr Biol (2002) 1.10

Structural polymorphism of the ParM filament and dynamic instability. Structure (2009) 1.09

Foundational concepts and underlying theories for majors in "biochemistry and molecular biology". Biochem Mol Biol Educ (2013) 1.09

The N-terminal domains of myosin binding protein C can bind polymorphically to F-actin. J Mol Biol (2011) 1.08

Magnesium ion-dependent activation of the RecA protein involves the C terminus. J Biol Chem (2003) 1.08

A new model for SOS-induced mutagenesis: how RecA protein activates DNA polymerase V. Crit Rev Biochem Mol Biol (2010) 1.08

Do the utrophin tandem calponin homology domains bind F-actin in a compact or extended conformation? J Mol Biol (2003) 1.07

Defending science education against intelligent design: a call to action. J Clin Invest (2006) 1.07

The RecA proteins of Deinococcus radiodurans and Escherichia coli promote DNA strand exchange via inverse pathways. Proc Natl Acad Sci U S A (2002) 1.07

The structure of an archaeal pilus. J Mol Biol (2008) 1.06

RecA Protein from the extremely radioresistant bacterium Deinococcus radiodurans: expression, purification, and characterization. J Bacteriol (2002) 1.06

Functional and structural basis for a bacteriophage homolog of human RAD52. Curr Biol (2008) 1.06

The structure of the Salmonella typhimurium type III secretion system needle shows divergence from the flagellar system. J Mol Biol (2010) 1.05