Published in BMC Ecol on April 20, 2011
Mitogenome phylogenetics: the impact of using single regions and partitioning schemes on topology, substitution rate and divergence time estimation. PLoS One (2011) 1.17
Mitogenomics of the Speartooth Shark challenges ten years of control region sequencing. BMC Evol Biol (2014) 0.90
Historical and contemporary DNA indicate fisher decline and isolation occurred prior to the European settlement of California. PLoS One (2012) 0.89
Low diversity in the mitogenome of sperm whales revealed by next-generation sequencing. Genome Biol Evol (2013) 0.84
A long PCR-based approach for DNA enrichment prior to next-generation sequencing for systematic studies. Appl Plant Sci (2014) 0.84
Parallel tagged next-generation sequencing on pooled samples - a new approach for population genetics in ecology and conservation. PLoS One (2013) 0.80
Merging and comparing three mitochondrial markers for phylogenetic studies of Eurasian reindeer (Rangifer tarandus). Ecol Evol (2016) 0.77
Complete mitochondrial genomes of two flat-backed millipedes by next-generation sequencing (Diplopoda, Polydesmida). Zookeys (2016) 0.75
Evolutionary history of endemic Sulawesi squirrels constructed from UCEs and mitogenomes sequenced from museum specimens. BMC Evol Biol (2016) 0.75
The influence of molecular markers and methods on inferring the phylogenetic relationships between the representatives of the Arini (parrots, Psittaciformes), determined on the basis of their complete mitochondrial genomes. BMC Evol Biol (2017) 0.75
Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res (2008) 157.44
Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res (2008) 151.16
BLAT--the BLAST-like alignment tool. Genome Res (2002) 126.78
GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update. Bioinformatics (2012) 65.14
Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics (1992) 43.80
APE: Analyses of Phylogenetics and Evolution in R language. Bioinformatics (2004) 39.31
A rapid bootstrap algorithm for the RAxML Web servers. Syst Biol (2008) 38.22
MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform (2008) 24.69
The impact of next-generation sequencing technology on genetics. Trends Genet (2008) 21.07
Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision. Trends Genet (2004) 17.22
Mitochondrial genome variation and the origin of modern humans. Nature (2000) 11.92
Mitochondrial DNA mutations in human disease. Nat Rev Genet (2005) 8.51
Identification of genetic variants using bar-coded multiplexed sequencing. Nat Methods (2008) 7.50
Applications of next-generation sequencing technologies in functional genomics. Genomics (2008) 6.50
pegas: an R package for population genetics with an integrated-modular approach. Bioinformatics (2010) 6.45
Targeted retrieval and analysis of five Neandertal mtDNA genomes. Science (2009) 5.79
Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Nucleic Acids Res (2008) 5.00
High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome. Nature (2004) 4.79
The role of selection in the evolution of human mitochondrial genomes. Genetics (2005) 4.56
mtDNA data indicate a single origin for dogs south of Yangtze River, less than 16,300 years ago, from numerous wolves. Mol Biol Evol (2009) 3.23
Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond. Curr Opin Plant Biol (2009) 3.18
Beringian standstill and spread of Native American founders. PLoS One (2007) 3.10
Whole-genome shotgun sequencing of mitochondria from ancient hair shafts. Science (2007) 2.85
A genetic algorithm approach to detecting lineage-specific variation in selection pressure. Mol Biol Evol (2004) 2.65
Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species. Genome Res (2010) 2.50
Inherited mitochondrial optic neuropathies. J Med Genet (2008) 2.50
Identification of management units using population genetic data. Trends Ecol Evol (2006) 2.46
Strong variations of mitochondrial mutation rate across mammals--the longevity hypothesis. Mol Biol Evol (2007) 2.33
Evidence for an ancient adaptive episode of convergent molecular evolution. Proc Natl Acad Sci U S A (2009) 2.14
Evaluating the mitochondrial timescale of human evolution. Trends Ecol Evol (2009) 1.59
Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes. Proc Natl Acad Sci U S A (2008) 1.53
A Bayesian evaluation of human mitochondrial substitution rates. Am J Hum Genet (2008) 1.38
Next generation molecular ecology. Mol Ecol (2010) 1.30
High mitogenomic evolutionary rates and time dependency. Trends Genet (2009) 1.28
Muller's Ratchet and compensatory mutation in Caenorhabditis briggsae mitochondrial genome evolution. BMC Evol Biol (2008) 1.26
Rate variation between mitochondrial domains and adaptive evolution in humans. Hum Mol Genet (2007) 1.12
Analysis of complete mitochondrial genomes from extinct and extant rhinoceroses reveals lack of phylogenetic resolution. BMC Evol Biol (2009) 1.07
Conservation genetics of the fisher (Martes pennanti) based on mitochondrial DNA sequencing. Mol Ecol (2003) 0.93
Regional variation in home-range-scale habitat models for fisher (Martes pennanti) in California. Ecol Appl (2007) 0.79
The genome of woodland strawberry (Fragaria vesca). Nat Genet (2010) 5.86
Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Nucleic Acids Res (2008) 5.00
Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. Proc Natl Acad Sci U S A (2003) 4.62
Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes. BMC Biol (2009) 2.40
Molecular phylogenetics of the clover genus (Trifolium--Leguminosae). Mol Phylogenet Evol (2006) 2.04
Compromising genetic diversity in the wild: unmonitored large-scale release of plants and animals. Trends Ecol Evol (2010) 2.02
Fossil calibration of molecular divergence infers a moderate mutation rate and recent radiations for pinus. Mol Biol Evol (2006) 2.00
Robust detection of rare species using environmental DNA: the importance of primer specificity. PLoS One (2013) 1.90
Gene flow in complex landscapes: testing multiple hypotheses with causal modeling. Am Nat (2006) 1.90
Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics. Am J Bot (2011) 1.82
Distance, flow and PCR inhibition: eDNA dynamics in two headwater streams. Mol Ecol Resour (2014) 1.61
Understanding and estimating effective population size for practical application in marine species management. Conserv Biol (2011) 1.53
Targeted enrichment strategies for next-generation plant biology. Am J Bot (2012) 1.47
The climate velocity of the contiguous United States during the 20th century. Glob Chang Biol (2012) 1.42
Advancing ecological understandings through technological transformations in noninvasive genetics. Mol Ecol Resour (2009) 1.41
Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing. BMC Genomics (2011) 1.26
Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae). BMC Evol Biol (2012) 1.23
Widespread genealogical nonmonophyly in species of Pinus subgenus Strobus. Syst Biol (2007) 1.16
Evolutionary relationships among Pinus (Pinaceae) subsections inferred from multiple low-copy nuclear loci. Am J Bot (2005) 1.16
Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing. Mol Phylogenet Evol (2012) 1.15
Use of empirically derived source-destination models to map regional conservation corridors. Conserv Biol (2008) 1.13
When are genetic methods useful for estimating contemporary abundance and detecting population trends? Mol Ecol Resour (2010) 1.13
Reticulate evolution and incomplete lineage sorting among the ponderosa pines. Mol Phylogenet Evol (2009) 1.10
Adventures in the enormous: a 1.8 million clone BAC library for the 21.7 Gb genome of loblolly pine. PLoS One (2011) 1.10
Targeted sequence capture provides insight into genome structure and genetics of male sterility in a gynodioecious diploid strawberry, Fragaria vesca ssp. bracteata (Rosaceae). G3 (Bethesda) (2013) 1.06
Candidate gene microsatellite variation is associated with parasitism in wild bighorn sheep. Biol Lett (2008) 1.04
Neglect of genetic diversity in implementation of the convention on biological diversity. Conserv Biol (2009) 1.02
Intraspecific chromosome number variation: a neglected threat to the conservation of rare plants. Conserv Biol (2008) 1.00
Interspecific phylogenetic analysis enhances intraspecific phylogeographical inference: a case study in Pinus lambertiana. Mol Ecol (2007) 0.99
Red flags: correlates of impaired species recovery. Trends Ecol Evol (2012) 0.99
DNA barcoding at riverscape scales: assessing biodiversity among fishes of the genus Cottus (Teleostei) in northern Rocky Mountain streams. Mol Ecol Resour (2013) 0.96
Repeat intercontinental dispersal and Pleistocene speciation in disjunct Mediterranean and desert Senecio (Asteraceae). Am J Bot (2003) 0.95
Use of the chloroplast gene ycf1 for the genetic differentiation of pine nuts obtained from consumers experiencing dysgeusia. J Agric Food Chem (2011) 0.93
Horizontal transfer of DNA from the mitochondrial to the plastid genome and its subsequent evolution in milkweeds (apocynaceae). Genome Biol Evol (2013) 0.92
A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation. BMC Genomics (2013) 0.90
Historical and contemporary DNA indicate fisher decline and isolation occurred prior to the European settlement of California. PLoS One (2012) 0.89
Phylogenetic insights into the correlates of dioecy in meadow-rues (Thalictrum, Ranunculaceae). Mol Phylogenet Evol (2012) 0.87
Scale-dependent genetic structure of the Idaho giant salamander (Dicamptodon aterrimus) in stream networks. Mol Ecol (2010) 0.87
Spatially explicit power analyses for occupancy-based monitoring of wolverine in the U.S. Rocky Mountains. Conserv Biol (2013) 0.86
Low diversity in the mitogenome of sperm whales revealed by next-generation sequencing. Genome Biol Evol (2013) 0.84
Strong population structure characterizes weediness gene evolution in the invasive grass species Brachypodium distachyon. Mol Ecol (2009) 0.82
Breed locally, disperse globally: fine-scale genetic structure despite landscape-scale panmixia in a fire-specialist. PLoS One (2013) 0.82
Genetic consequences of sex-biased dispersal in a solitary carnivore: Yellowstone cougars. Biol Lett (2006) 0.82
Effects of weighting schemes on the identification of wildlife corridors generated with least-cost methods. Conserv Biol (2012) 0.81
Length and sequence heterogeneity in 5S rDNA of Populus deltoides. Genome (2002) 0.81
An empirical evaluation of two-stage species tree inference strategies using a multilocus dataset from North American pines. BMC Evol Biol (2014) 0.80
Bioclimatic, ecological, and phenotypic intermediacy and high genetic admixture in a natural hybrid of octoploid strawberries. Am J Bot (2013) 0.79
Moa were many. Proc Biol Sci (2004) 0.79
Newly developed primers for complete ycf1 amplification in Pinus (Pinaceae) chloroplasts with possible family-wide utility. Am J Bot (2011) 0.78
Genetic diversity of the narrow endemic Astragalus oniciformis (Fabaceae). Am J Bot (2004) 0.78
An evaluation of putative sympatric speciation within Limnanthes (Limnanthaceae). PLoS One (2012) 0.77
Microsatellite primers for the Pacific Northwest endemic conifer Chamaecyparis lawsoniana (Cupressaceae). Am J Bot (2011) 0.77
Tangled trios?: Characterizing a hybrid zone in Castilleja (Orobanchaceae). Am J Bot (2009) 0.75
Correction: Environmental DNA Marker Development with Sparse Biological Information: A Case Study on Opossum Shrimp (Mysis diluviana). PLoS One (2016) 0.75
Implications of nonadventitious rhizome spread on reproduction, inbreeding, and conservation for a rare grassland legume. J Hered (2011) 0.75