Published in Curr Opin Plant Biol on January 20, 2009
SHOREmap: simultaneous mapping and mutation identification by deep sequencing. Nat Methods (2009) 4.01
RNA-seq: from technology to biology. Cell Mol Life Sci (2009) 3.03
Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms. BMC Genomics (2010) 2.45
Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana. Nat Rev Genet (2010) 1.91
Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.). BMC Genomics (2010) 1.84
deepBase: a database for deeply annotating and mining deep sequencing data. Nucleic Acids Res (2009) 1.78
NGS technologies for analyzing germplasm diversity in genebanks. Brief Funct Genomics (2012) 1.76
Towards the understanding of complex traits in rice: substantially or superficially? DNA Res (2009) 1.75
Lignin metabolism has a central role in the resistance of cotton to the wilt fungus Verticillium dahliae as revealed by RNA-Seq-dependent transcriptional analysis and histochemistry. J Exp Bot (2011) 1.67
Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules. Plant Cell (2009) 1.66
Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing. BMC Genomics (2011) 1.61
Deep mRNA sequencing for in vivo functional analysis of cardiac transcriptional regulators: application to Galphaq. Circ Res (2010) 1.61
Biofuels from algae: challenges and potential. Biofuels (2010) 1.54
Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems. BMC Genomics (2011) 1.52
Digital gene expression signatures for maize development. Plant Physiol (2010) 1.49
Studies of a biochemical factory: tomato trichome deep expressed sequence tag sequencing and proteomics. Plant Physiol (2010) 1.33
microRNAs and genetic diseases. Pathogenetics (2009) 1.32
Advances in omics and bioinformatics tools for systems analyses of plant functions. Plant Cell Physiol (2011) 1.28
A collection of INDEL markers for map-based cloning in seven Arabidopsis accessions. J Exp Bot (2012) 1.26
DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data. DNA Res (2013) 1.24
Transcriptome profiling of radish (Raphanus sativus L.) root and identification of genes involved in response to Lead (Pb) stress with next generation sequencing. PLoS One (2013) 1.12
Light signal transduction: an infinite spectrum of possibilities. Plant J (2010) 1.10
Genome-wide identification of Brassica napus microRNAs and their targets in response to cadmium. J Exp Bot (2012) 1.09
Substantial deletion overlap among divergent Arabidopsis genomes revealed by intersection of short reads and tiling arrays. Genome Biol (2010) 1.08
Transcriptomic signatures of ash (Fraxinus spp.) phloem. PLoS One (2011) 1.07
Signaling between chloroplasts and the nucleus: can a systems biology approach bring clarity to a complex and highly regulated pathway? Plant Physiol (2009) 1.04
Gene transposition causing natural variation for growth in Arabidopsis thaliana. PLoS Genet (2010) 1.02
ncRNAimprint: a comprehensive database of mammalian imprinted noncoding RNAs. RNA (2010) 0.99
Evolutionary history and stress regulation of the lectin superfamily in higher plants. BMC Evol Biol (2010) 0.98
Yellow lupin (Lupinus luteus L.) transcriptome sequencing: molecular marker development and comparative studies. BMC Genomics (2012) 0.98
High-throughput sequencing of black pepper root transcriptome. BMC Plant Biol (2012) 0.95
A calibrated diversity assay for nucleic acid libraries using DiStRO--a Diversity Standard of Random Oligonucleotides. Nucleic Acids Res (2009) 0.94
Gene discovery using mutagen-induced polymorphisms and deep sequencing: application to plant disease resistance. Genetics (2012) 0.93
Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore. BMC Ecol (2011) 0.91
Genetic mapping of the major histocompatibility complex in the zebra finch (Taeniopygia guttata). Immunogenetics (2011) 0.91
Bulk segregant analysis of an induced floral mutant identifies a MIXTA-like R2R3 MYB controlling nectar guide formation in Mimulus lewisii. Genetics (2013) 0.91
DNA methylation and its implications and accessibility for neuropsychiatric therapeutics. Annu Rev Pharmacol Toxicol (2014) 0.89
Genome-wide mining, characterization, and development of microsatellite markers in gossypium species. Sci Rep (2015) 0.89
Global analysis of the Gossypium hirsutum L. Transcriptome during leaf senescence by RNA-Seq. BMC Plant Biol (2015) 0.88
Deep sequencing strategies for mapping and identifying mutations from genetic screens. Worm (2013) 0.86
MIPModDB: a central resource for the superfamily of major intrinsic proteins. Nucleic Acids Res (2011) 0.86
SOLiD-SAGE of endophyte-infected red fescue reveals numerous effects on host transcriptome and an abundance of highly expressed fungal secreted proteins. PLoS One (2012) 0.86
Reciprocal insights into adaptation from agricultural and evolutionary studies in tomato. Evol Appl (2010) 0.85
Transcriptomic analysis of Petunia hybrida in response to salt stress using high throughput RNA sequencing. PLoS One (2014) 0.85
Sequence based polymorphic (SBP) marker technology for targeted genomic regions: its application in generating a molecular map of the Arabidopsis thaliana genome. BMC Genomics (2012) 0.85
Parasites, proteomes and systems: has Descartes' clock run out of time? Parasitology (2012) 0.84
RNA-Seq analysis and transcriptome assembly for blackberry (Rubus sp. Var. Lochness) fruit. BMC Genomics (2015) 0.83
Transcriptome analysis of cytokinin response in tomato leaves. PLoS One (2013) 0.83
A comparative analysis of DNA barcode microarray feature size. BMC Genomics (2009) 0.83
RNA sequencing analysis of the gametophyte transcriptome from the liverwort, Marchantia polymorpha. PLoS One (2014) 0.83
Omics and bioinformatics: an essential toolbox for systems analyses of plant functions beyond 2010. Plant Cell Physiol (2009) 0.83
Plant systems biology: insights, advances and challenges. Planta (2014) 0.83
TRUFA: A User-Friendly Web Server for de novo RNA-seq Analysis Using Cluster Computing. Evol Bioinform Online (2015) 0.83
Use of mutagenesis, genetic mapping and next generation transcriptomics to investigate insecticide resistance mechanisms. PLoS One (2012) 0.83
Differential transcriptome analysis of leaves of tea plant (Camellia sinensis) provides comprehensive insights into the defense responses to Ectropis oblique attack using RNA-Seq. Funct Integr Genomics (2016) 0.82
ALOMYbase, a resource to investigate non-target-site-based resistance to herbicides inhibiting acetolactate-synthase (ALS) in the major grass weed Alopecurus myosuroides (black-grass). BMC Genomics (2015) 0.82
A novel viable allele of Arabidopsis CULLIN1 identified in a screen for superroot2 suppressors by next generation sequencing-assisted mapping. PLoS One (2014) 0.80
High-throughput transcriptome sequencing and preliminary functional analysis in four Neotropical tree species. BMC Genomics (2014) 0.80
2D-PAGE as an effective method of RNA degradome analysis. Mol Biol Rep (2011) 0.80
The case for resequencing studies of Arabidopsis thaliana accessions: mining the dark matter of natural genetic variation. F1000 Biol Rep (2010) 0.80
Genomic variation in Arabidopsis: tools and insights from next-generation sequencing. Chromosome Res (2014) 0.78
Rapid identification of angulata leaf mutations using next-generation sequencing. Planta (2014) 0.78
The use of high-throughput sequencing methods for plant microRNA research. RNA Biol (2015) 0.78
Strategies to modulate heritable epigenetic defects in cellular machinery: lessons from nature. Pharmaceuticals (Basel) (2012) 0.78
Development of INDEL Markers for Genetic Mapping Based on Whole Genome Resequencing in Soybean. G3 (Bethesda) (2015) 0.77
New approaches to manipulating the epigenome. Dialogues Clin Neurosci (2014) 0.77
Next-Generation Sequencing-Based Approaches for Mutation Mapping and Identification in Caenorhabditis elegans. Genetics (2016) 0.77
A simple optimization can improve the performance of single feature polymorphism detection by Affymetrix expression arrays. BMC Genomics (2010) 0.76
Bioinformatics Approach in Plant Genomic Research. Curr Genomics (2016) 0.75
Transcriptomic Analysis Identifies Differentially Expressed Genes (DEGs) Associated with Bolting and Flowering in Radish (Raphanus sativus L.). Front Plant Sci (2016) 0.75
smRNAome profiling to identify conserved and novel microRNAs in Stevia rebaudiana Bertoni. BMC Plant Biol (2012) 0.75
De novo sequencing and comparative transcriptome analysis of adventitious root development induced by exogenous indole-3-butyric acid in cuttings of tetraploid black locust. BMC Genomics (2017) 0.75
From transposon to chromosome and polyploidy. An update on cytogenetics and genomics of Arabidopsis. Chromosome Res (2014) 0.75
Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods (2008) 126.81
High-resolution profiling of histone methylations in the human genome. Cell (2007) 85.74
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature (2007) 75.09
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature (2000) 70.33
Next-generation DNA sequencing methods. Annu Rev Genomics Hum Genet (2008) 68.81
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature (2007) 65.18
Genome-wide mapping of in vivo protein-DNA interactions. Science (2007) 64.92
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res (2008) 62.07
Serial analysis of gene expression. Science (1995) 60.15
The transcriptional landscape of the yeast genome defined by RNA sequencing. Science (2008) 48.99
A novel genetic system to detect protein-protein interactions. Nature (1989) 43.83
The transcriptional landscape of the mammalian genome. Science (2005) 37.63
Next-generation DNA sequencing. Nat Biotechnol (2008) 34.95
Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell (2008) 32.65
Genome-wide location and function of DNA binding proteins. Science (2000) 31.25
Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat Methods (2008) 31.04
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science (2008) 29.99
A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc Natl Acad Sci U S A (1992) 29.51
Targeted mutation of the DNA methyltransferase gene results in embryonic lethality. Cell (1992) 27.80
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature (2008) 26.78
Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. Nature (2001) 21.55
Whole-genome patterns of common DNA variation in three human populations. Science (2005) 21.22
Accurate multiplex polony sequencing of an evolved bacterial genome. Science (2005) 20.91
Complementary DNA sequencing: expressed sequence tags and human genome project. Science (1991) 19.42
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature (2008) 18.84
RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science (2007) 18.59
Global identification of human transcribed sequences with genome tiling arrays. Science (2004) 17.85
The complex language of chromatin regulation during transcription. Nature (2007) 16.97
Dissecting direct reprogramming through integrative genomic analysis. Nature (2008) 16.47
Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays. Nat Biotechnol (2000) 15.79
Blocks of limited haplotype diversity revealed by high-resolution scanning of human chromosome 21. Science (2001) 15.54
Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell (2006) 15.24
Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc Natl Acad Sci U S A (1991) 13.51
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat Genet (2006) 11.88
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev (2006) 11.71
Empirical analysis of transcriptional activity in the Arabidopsis genome. Science (2003) 11.62
RNA silencing in plants. Nature (2004) 11.12
The DNA methyltransferases of mammals. Hum Mol Genet (2000) 10.66
Role of transposable elements in heterochromatin and epigenetic control. Nature (2004) 10.51
Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science (2007) 9.85
Genome-wide transcription and the implications for genomic organization. Nat Rev Genet (2007) 9.45
Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol (2007) 9.45
DNMT1 and DNMT3b cooperate to silence genes in human cancer cells. Nature (2002) 9.40
Perspective: machines for RNAi. Genes Dev (2005) 9.37
Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data. Nucleic Acids Res (2008) 8.89
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage. Proc Natl Acad Sci U S A (2003) 8.73
Controlling the double helix. Nature (2003) 8.61
Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Res (2008) 8.44
Identification of genetic variants using bar-coded multiplexed sequencing. Nat Methods (2008) 7.50
High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. PLoS One (2007) 7.34
Chromatin immunoprecipitation and microarray-based analysis of protein location. Nat Protoc (2006) 7.29
Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Res (2006) 7.10
Genome-wide analysis of protein-DNA interactions. Annu Rev Genomics Hum Genet (2006) 6.47
Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays. Nucleic Acids Res (2000) 6.20
Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. Nat Biotechnol (2008) 6.18
Genome-wide profiling and analysis of Arabidopsis siRNAs. PLoS Biol (2007) 5.86
Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones. Cell (1987) 5.00
Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. Curr Biol (2008) 5.00
High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies. PLoS Genet (2008) 4.86
Caenorhabditis elegans mutant allele identification by whole-genome sequencing. Nat Methods (2008) 4.71
Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology. BMC Genomics (2006) 4.54
Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature (2008) 4.20
MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Res (2006) 4.08
Identification of novel and candidate miRNAs in rice by high throughput sequencing. BMC Plant Biol (2008) 3.43
Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting. Plant Cell (2007) 3.40
A link between RNA metabolism and silencing affecting Arabidopsis development. Dev Cell (2008) 3.39
A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains. Genome Res (2008) 3.25
Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27. PLoS Genet (2007) 3.11
Cloning and characterization of microRNAs from wheat (Triticum aestivum L.). Genome Biol (2007) 3.02
Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs). Proc Natl Acad Sci U S A (2008) 2.92
Isolation of molecular markers from specific chromosomal intervals using DNA pools from existing mapping populations. Nucleic Acids Res (1991) 2.70
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa. Genome Res (2008) 2.70
Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. PLoS One (2008) 2.69
Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome. Cell (2007) 2.58
Modifying gene expression programs by altering core promoter chromatin architecture. Cell (2002) 2.22
Transcriptome content and dynamics at single-nucleotide resolution. Genome Biol (2008) 2.12
Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions. Genome Res (2007) 2.03
Distinct size distribution of endogeneous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant. Proc Natl Acad Sci U S A (2008) 1.92
The art and design of genetic screens: Arabidopsis thaliana. Nat Rev Genet (2002) 1.82
Conservation and divergence of microRNAs in Populus. BMC Genomics (2007) 1.78
RNA silencing and genome regulation. Trends Cell Biol (2005) 1.69
At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana. Genome Biol (2008) 1.62
Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants. Plant J (2007) 1.28
Conifers have a unique small RNA silencing signature. RNA (2008) 1.26
Gene identification and cloning by molecular marker mapping. Methods Mol Biol (2006) 0.88
RNA-directed RNA polymerase3 from Nicotiana attenuata is required for competitive growth in natural environments. Plant Physiol (2008) 0.85
Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science (2003) 39.19
Human DNA methylomes at base resolution show widespread epigenomic differences. Nature (2009) 34.27
Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell (2008) 32.65
Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell (2006) 15.24
The NIH Roadmap Epigenomics Mapping Consortium. Nat Biotechnol (2010) 13.99
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature (2011) 13.94
HIV-1 integration in the human genome favors active genes and local hotspots. Cell (2002) 12.60
Prepublication data sharing. Nature (2009) 12.24
Empirical analysis of transcriptional activity in the Arabidopsis genome. Science (2003) 11.62
Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature (2010) 10.66
Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science (2007) 9.85
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells. Cell Stem Cell (2010) 8.74
Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences. PLoS Biol (2004) 8.27
Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells. Nature (2011) 7.43
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications. Nat Biotechnol (2010) 7.00
Genome-wide analysis of cAMP-response element binding protein occupancy, phosphorylation, and target gene activation in human tissues. Proc Natl Acad Sci U S A (2005) 6.26
Arabidopsis RIN4 is a target of the type III virulence effector AvrRpt2 and modulates RPS2-mediated resistance. Cell (2003) 5.87
Recombination and linkage disequilibrium in Arabidopsis thaliana. Nat Genet (2007) 5.69
Ethylene biosynthesis and signaling networks. Plant Cell (2002) 5.37
A role for LEDGF/p75 in targeting HIV DNA integration. Nat Med (2005) 4.88
Plant responses to ethylene gas are mediated by SCF(EBF1/EBF2)-dependent proteolysis of EIN3 transcription factor. Cell (2003) 4.70
Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19. Plant Cell (2005) 4.41
Literature-curated protein interaction datasets. Nat Methods (2009) 4.21
Finding the fifth base: genome-wide sequencing of cytosine methylation. Genome Res (2009) 4.16
The ethylene signaling pathway: new insights. Curr Opin Plant Biol (2004) 4.12
Applications of DNA tiling arrays for whole-genome analysis. Genomics (2005) 3.94
ABA-activated SnRK2 protein kinase is required for dehydration stress signaling in Arabidopsis. Plant Cell Physiol (2002) 3.90
Epigenomic analysis of multilineage differentiation of human embryonic stem cells. Cell (2013) 3.81
Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3. Genes Dev (2002) 3.75
Independently evolved virulence effectors converge onto hubs in a plant immune system network. Science (2011) 3.72
Retroviral DNA integration: viral and cellular determinants of target-site selection. PLoS Pathog (2006) 3.67
Transgenerational epigenetic instability is a source of novel methylation variants. Science (2011) 3.66
Type-A Arabidopsis response regulators are partially redundant negative regulators of cytokinin signaling. Plant Cell (2004) 3.56
Localization of iron in Arabidopsis seed requires the vacuolar membrane transporter VIT1. Science (2006) 3.46
A link between RNA metabolism and silencing affecting Arabidopsis development. Dev Cell (2008) 3.39
Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer. Genome Res (2011) 3.36
CDPKs CPK6 and CPK3 function in ABA regulation of guard cell S-type anion- and Ca(2+)-permeable channels and stomatal closure. PLoS Biol (2006) 3.32
Chloroplast to nucleus communication triggered by accumulation of Mg-protoporphyrinIX. Nature (2003) 3.27
Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development. Plant Cell (2004) 3.17
LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms. Proc Natl Acad Sci U S A (2005) 3.04
Enhanced fitness conferred by naturally occurring variation in the circadian clock. Science (2003) 3.02
Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation. Development (2005) 2.97
Della proteins and gibberellin-regulated seed germination and floral development in Arabidopsis. Plant Physiol (2004) 2.95
Widespread dynamic DNA methylation in response to biotic stress. Proc Natl Acad Sci U S A (2012) 2.90
The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development. Proc Natl Acad Sci U S A (2004) 2.71
Five components of the ethylene-response pathway identified in a screen for weak ethylene-insensitive mutants in Arabidopsis. Proc Natl Acad Sci U S A (2003) 2.71
Patterns of population epigenomic diversity. Nature (2013) 2.70
Forward and reverse genetics through derivation of haploid mouse embryonic stem cells. Cell Stem Cell (2011) 2.69
Interplay between ethylene, ETP1/ETP2 F-box proteins, and degradation of EIN2 triggers ethylene responses in Arabidopsis. Genes Dev (2009) 2.59
Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome. Cell (2007) 2.58
Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation. Proc Natl Acad Sci U S A (2005) 2.47
GUN4, a regulator of chlorophyll synthesis and intracellular signaling. Science (2003) 2.47
The beta-subunit of the Arabidopsis G protein negatively regulates auxin-induced cell division and affects multiple developmental processes. Plant Cell (2003) 2.41
Convergence of signaling pathways in the control of differential cell growth in Arabidopsis. Dev Cell (2004) 2.37
The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels. Plant Cell (2008) 2.33
FRIGIDA-independent variation in flowering time of natural Arabidopsis thaliana accessions. Genetics (2005) 2.32
NPH4/ARF7 and ARF19 promote leaf expansion and auxin-induced lateral root formation. Plant J (2005) 2.32
Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2007) 2.29
Functional genomic analysis of the AUXIN/INDOLE-3-ACETIC ACID gene family members in Arabidopsis thaliana. Plant Cell (2005) 2.27
CBF2/DREB1C is a negative regulator of CBF1/DREB1B and CBF3/DREB1A expression and plays a central role in stress tolerance in Arabidopsis. Proc Natl Acad Sci U S A (2004) 2.26
Regulation of ethylene gas biosynthesis by the Arabidopsis ETO1 protein. Nature (2004) 2.26
Processing and subcellular trafficking of ER-tethered EIN2 control response to ethylene gas. Science (2012) 2.17
Multiple type-B response regulators mediate cytokinin signal transduction in Arabidopsis. Plant Cell (2005) 2.14
Rapid array mapping of circadian clock and developmental mutations in Arabidopsis. Plant Physiol (2005) 2.07
Phytochrome-specific type 5 phosphatase controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. Cell (2005) 2.06
The Arabidopsis histidine phosphotransfer proteins are redundant positive regulators of cytokinin signaling. Plant Cell (2006) 2.06
Light-response quantitative trait loci identified with composite interval and eXtreme array mapping in Arabidopsis thaliana. Genetics (2004) 2.00
Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis. Nat Rev Genet (2006) 1.97
Ethylene-induced stabilization of ETHYLENE INSENSITIVE3 and EIN3-LIKE1 is mediated by proteasomal degradation of EIN3 binding F-box 1 and 2 that requires EIN2 in Arabidopsis. Plant Cell (2010) 1.96
Isolation and characterization of phyC mutants in Arabidopsis reveals complex crosstalk between phytochrome signaling pathways. Plant Cell (2003) 1.90
De-etiolated 1 and damaged DNA binding protein 1 interact to regulate Arabidopsis photomorphogenesis. Curr Biol (2002) 1.89
Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome. Genes Dev (2012) 1.85
Integration site selection by HIV-based vectors in dividing and growth-arrested IMR-90 lung fibroblasts. Mol Ther (2005) 1.85
RF1 knockout allows ribosomal incorporation of unnatural amino acids at multiple sites. Nat Chem Biol (2011) 1.83
Linking photoreceptor excitation to changes in plant architecture. Genes Dev (2012) 1.80
Three redundant brassinosteroid early response genes encode putative bHLH transcription factors required for normal growth. Genetics (2002) 1.78
Lamin B1 depletion in senescent cells triggers large-scale changes in gene expression and the chromatin landscape. Genes Dev (2013) 1.78
Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome. Cell Metab (2012) 1.77
HIV integration site selection: targeting in macrophages and the effects of different routes of viral entry. Mol Ther (2006) 1.75
Regulation of flowering time in Arabidopsis by K homology domain proteins. Proc Natl Acad Sci U S A (2004) 1.73
Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population. Genome Res (2013) 1.72
Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis. Nat Struct Mol Biol (2012) 1.70
'Leveling' the playing field for analyses of single-base resolution DNA methylomes. Trends Genet (2012) 1.67
Small RNA-mediated chromatin silencing directed to the 3' region of the Arabidopsis gene encoding the developmental regulator, FLC. Proc Natl Acad Sci U S A (2007) 1.67
The phosphatase laforin crosses evolutionary boundaries and links carbohydrate metabolism to neuronal disease. J Cell Biol (2007) 1.67
Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis. Elife (2013) 1.64
Direct transcriptional control of the Arabidopsis immune receptor FLS2 by the ethylene-dependent transcription factors EIN3 and EIL1. Proc Natl Acad Sci U S A (2010) 1.63
Potential sites of bioactive gibberellin production during reproductive growth in Arabidopsis. Plant Cell (2008) 1.61
Short-term growth responses to ethylene in Arabidopsis seedlings are EIN3/EIL1 independent. Plant Physiol (2004) 1.60
An adapter ligation-mediated PCR method for high-throughput mapping of T-DNA inserts in the Arabidopsis genome. Nat Protoc (2007) 1.56
Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis. PLoS Genet (2010) 1.56
ETHYLENE-INSENSITIVE5 encodes a 5'-->3' exoribonuclease required for regulation of the EIN3-targeting F-box proteins EBF1/2. Proc Natl Acad Sci U S A (2006) 1.56
Linking genotype to phenotype using the Arabidopsis unimutant collection. Plant J (2010) 1.55
GCR1 can act independently of heterotrimeric G-protein in response to brassinosteroids and gibberellins in Arabidopsis seed germination. Plant Physiol (2004) 1.54
Global analysis of RNA secondary structure in two metazoans. Cell Rep (2012) 1.50
A combinatorial interplay among the 1-aminocyclopropane-1-carboxylate isoforms regulates ethylene biosynthesis in Arabidopsis thaliana. Genetics (2009) 1.49