Published in PLoS One on April 25, 2011
A DNA-based registry for all animal species: the barcode index number (BIN) system. PLoS One (2013) 5.10
A comparative evaluation of sequence classification programs. BMC Bioinformatics (2012) 1.24
High-throughput sequencing offers insight into mechanisms of resource partitioning in cryptic bat species. Ecol Evol (2011) 1.12
Patterns of DNA barcode variation in Canadian marine molluscs. PLoS One (2014) 1.07
The phylogenetics of Anguillicolidae (Nematoda: Anguillicoloidea), swimbladder parasites of eels. BMC Evol Biol (2012) 1.05
Integrated operational taxonomic units (IOTUs) in echolocating bats: a bridge between molecular and traditional taxonomy. PLoS One (2012) 1.04
DNA barcoding reveals diversity of Hymenoptera and the dominance of parasitoids in a sub-arctic environment. BMC Ecol (2013) 0.99
The foraging ecology of the mountain long-eared bat Plecotus macrobullaris revealed with DNA mini-barcodes. PLoS One (2012) 0.99
Revealing the hyperdiverse mite fauna of subarctic Canada through DNA barcoding. PLoS One (2012) 0.99
Genomic and experimental evidence for multiple metabolic functions in the RidA/YjgF/YER057c/UK114 (Rid) protein family. BMC Genomics (2015) 0.94
From puffins to plankton: a DNA-based analysis of a seabird food chain in the northern Gulf of Maine. PLoS One (2013) 0.93
Delineating species with DNA barcodes: a case of taxon dependent method performance in moths. PLoS One (2015) 0.92
Are there species smaller than 1 mm? Proc Biol Sci (2013) 0.89
DNA barcoding of marine copepods: assessment of analytical approaches to species identification. PLoS Curr (2014) 0.89
A critique of Rossberg et al.: Noise obscures the genetic signal of meiobiotal ecospecies in ecogenomic datasets. Proc Biol Sci (2014) 0.82
Revisiting species delimitation within the genus Oxystele using DNA barcoding approach. Zookeys (2013) 0.82
Advances in DNA metabarcoding for food and wildlife forensic species identification. Anal Bioanal Chem (2016) 0.80
Discovery of a monophagous true predator, a specialist termite-eating spider (Araneae: Ammoxenidae). Sci Rep (2015) 0.79
Molecular species delimitation of a symbiotic fig-pollinating wasp species complex reveals extreme deviation from reciprocal partner specificity. BMC Evol Biol (2014) 0.79
Detection of mitochondrial COII DNA sequences in ant guts as a method for assessing termite predation by ants. PLoS One (2015) 0.78
The golden mimicry complex uses a wide spectrum of defence to deter a community of predators. Elife (2017) 0.77
CtaM Is Required for Menaquinol Oxidase aa3 Function in Staphylococcus aureus. MBio (2016) 0.77
MOTUs, Morphology, and Biodiversity Estimation: A Case Study Using Nematodes of the Suborder Criconematina and a Conserved 18S DNA Barcode. J Nematol (2011) 0.77
Assessment of ectomycorrhizal biodiversity in Tuber macrosporum productive sites. Mycorrhiza (2014) 0.77
Identification, Discrimination, and Discovery of Species of Marine Planktonic Ostracods Using DNA Barcodes. PLoS One (2016) 0.76
Multilocus inference of species trees and DNA barcoding. Philos Trans R Soc Lond B Biol Sci (2016) 0.76
Ancient River Inference Explains Exceptional Oriental Freshwater Mussel Radiations. Sci Rep (2017) 0.75
Fold or hold: experimental evolution in vitro. J Evol Biol (2013) 0.75
Metabarcoding of marine nematodes - evaluation of similarity scores used in alignment-based taxonomy assignment approach. Biodivers Data J (2016) 0.75
Capture efficiency and trophic adaptations of a specialist and generalist predator: A comparison. Ecol Evol (2017) 0.75
Systematic identification and analysis of frequent gene fusion events in metabolic pathways. BMC Genomics (2016) 0.75
Pay Attention to the Overlooked Cryptic Diversity in Existing Barcoding Data: the Case of Mollusca with Character-Based DNA Barcoding. Mar Biotechnol (NY) (2016) 0.75
Coevolutionary arms race versus host defense chase in a tropical herbivore-plant system. Proc Natl Acad Sci U S A (2017) 0.75
QIIME allows analysis of high-throughput community sequencing data. Nat Methods (2010) 85.34
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol (2009) 77.55
Biological identifications through DNA barcodes. Proc Biol Sci (2003) 54.14
Microbial diversity in the deep sea and the underexplored "rare biosphere". Proc Natl Acad Sci U S A (2006) 42.38
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res (2007) 35.65
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol (2005) 31.06
Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biol (2007) 23.64
Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc Biol Sci (2003) 19.42
Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc Natl Acad Sci U S A (2004) 18.32
Accurate determination of microbial diversity from 454 pyrosequencing data. Nat Methods (2009) 15.25
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environ Microbiol (2009) 14.17
Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ Microbiol (2010) 13.19
Identification of Birds through DNA Barcodes. PLoS Biol (2004) 11.80
Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. PLoS Genet (2008) 10.72
BLAST: improvements for better sequence analysis. Nucleic Acids Res (2006) 9.77
A DNA barcode for land plants. Proc Natl Acad Sci U S A (2009) 9.68
Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures. Appl Environ Microbiol (2006) 6.45
The promise of a DNA taxonomy. Philos Trans R Soc Lond B Biol Sci (2004) 5.51
Molecular barcodes for soil nematode identification. Mol Ecol (2002) 5.35
ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences. Nucleic Acids Res (2009) 4.93
Molecular systematics: Counting angels with DNA. Nature (2003) 3.90
Defining operational taxonomic units using DNA barcode data. Philos Trans R Soc Lond B Biol Sci (2005) 3.19
Barcode of life. Sci Am (2008) 2.64
Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises. Mol Ecol (2010) 2.64
Microbiology: eukaryotic diversity in Spain's River of Fire. Nature (2002) 2.61
DNA barcoding of arbuscular mycorrhizal fungi. New Phytol (2010) 2.41
DNA taxonomy of a neglected animal phylum: an unexpected diversity of tardigrades. Proc Biol Sci (2004) 1.80
Effects of experimental choices and analysis noise on surveys of the "rare biosphere". Appl Environ Microbiol (2009) 1.51
Zooplankton diversity analysis through single-gene sequencing of a community sample. BMC Genomics (2009) 0.97
Mapping the protistan 'rare biosphere'. J Biol (2009) 0.93
Molecular barcodes for soil nematode identification. Mol Ecol (2002) 5.35
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nat Biotechnol (2008) 5.19
Molecular systematics: Counting angels with DNA. Nature (2003) 3.90
IL-4 dependent alternatively-activated macrophages have a distinctive in vivo gene expression phenotype. BMC Immunol (2002) 3.44
Genome-wide evidence for speciation with gene flow in Heliconius butterflies. Genome Res (2013) 2.40
PartiGene--constructing partial genomes. Bioinformatics (2004) 2.32
Making sense of EST sequences by CLOBBing them. BMC Bioinformatics (2002) 2.08
Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum. PLoS One (2010) 1.80
Phylogenetic relationships of the Wolbachia of nematodes and arthropods. PLoS Pathog (2006) 1.65
SimiTri--visualizing similarity relationships for groups of sequences. Bioinformatics (2003) 1.64
Experimental evolution, genetic analysis and genome re-sequencing reveal the mutation conferring artemisinin resistance in an isogenic lineage of malaria parasites. BMC Genomics (2010) 1.55
The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets. FASEB J (2012) 1.40
NEMBASE: a resource for parasitic nematode ESTs. Nucleic Acids Res (2004) 1.38
Ecdysozoan mitogenomics: evidence for a common origin of the legged invertebrates, the Panarthropoda. Genome Biol Evol (2010) 1.35
Ancient origin of glycosyl hydrolase family 9 cellulase genes. Mol Biol Evol (2005) 1.27
On the extent and origins of genic novelty in the phylum Nematoda. PLoS Negl Trop Dis (2008) 1.25
Drosophila suzukii. Curr Biol (2013) 1.21
NEMBASE4: the nematode transcriptome resource. Int J Parasitol (2011) 1.18
Wolbachia genomes: revealing the biology of parasitism and mutualism. Trends Parasitol (2006) 1.13
Phylogeny and DNA barcoding of inquiline oak gallwasps (Hymenoptera: Cynipidae) of the Western Palaearctic. Mol Phylogenet Evol (2009) 1.10
Expressed sequence tags: an overview. Methods Mol Biol (2009) 1.10
Linking genomics and ecology to investigate the complex evolution of an invasive Drosophila pest. Genome Biol Evol (2013) 1.06
959 Nematode Genomes: a semantic wiki for coordinating sequencing projects. Nucleic Acids Res (2011) 1.04
Both free-living and parasitic nematodes induce a characteristic Th2 response that is dependent on the presence of intact glycans. Infect Immun (2004) 1.01
Are filarial nematode Wolbachia obligate mutualist symbionts? Trends Ecol Evol (2004) 1.01
Expressed sequence tags: medium-throughput protocols. Methods Mol Biol (2004) 0.98
200000 nematode expressed sequence tags on the Net. Trends Parasitol (2001) 0.97
400000 nematode ESTs on the Net. Trends Parasitol (2003) 0.97
The effect of model choice on phylogenetic inference using mitochondrial sequence data: lessons from the scorpions. Mol Phylogenet Evol (2006) 0.94
Tardigrades. Curr Biol (2002) 0.93
Phylogenomics and analysis of shared genes suggest a single transition to mutualism in Wolbachia of nematodes. Genome Biol Evol (2013) 0.92
Linking toxicant physiological mode of action with induced gene expression changes in Caenorhabditis elegans. BMC Syst Biol (2010) 0.91
Toward 959 nematode genomes. Worm (2012) 0.91
Developing EPIC markers for chalcidoid Hymenoptera from EST and genomic data. Mol Ecol Resour (2010) 0.88
Sequencing and analysis of a 63 kb bacterial artificial chromosome insert from the Wolbachia endosymbiont of the human filarial parasite Brugia malayi. Int J Parasitol (2002) 0.88
Hox gene evolution in nematodes: novelty conserved. Curr Opin Genet Dev (2003) 0.88
Functional diversification of Argonautes in nematodes: an expanding universe. Biochem Soc Trans (2013) 0.87
The transcriptome of the invasive eel swimbladder nematode parasite Anguillicola crassus. BMC Genomics (2013) 0.86
Differential display of genes expressed in the filarial nematode Litomosoides sigmodontis reveals a putative phosphate permease up-regulated after depletion of Wolbachia endobacteria. Int J Med Microbiol (2006) 0.84
Comparative genomics: two worms are better than one. Nature (2003) 0.84
Quantitative genome re-sequencing defines multiple mutations conferring chloroquine resistance in rodent malaria. BMC Genomics (2012) 0.84
A cryptoendolithic community in volcanic glass. Astrobiology (2009) 0.83
afterParty: turning raw transcriptomes into permanent resources. BMC Bioinformatics (2013) 0.83
Badger--an accessible genome exploration environment. Bioinformatics (2013) 0.82
Evolutionary biology: animal roots and shoots. Nature (2005) 0.82
A molecular analysis of desiccation tolerance mechanisms in the anhydrobiotic nematode Panagrolaimus superbus using expressed sequenced tags. BMC Res Notes (2012) 0.81
A genome sequence survey of the filarial nematode Brugia malayi: repeats, gene discovery, and comparative genomics. Mol Biochem Parasitol (2004) 0.81
Quantification of Wolbachia bacteria in Brugia malayi through the nematode lifecycle. Mol Biochem Parasitol (2004) 0.81
Obtaining accurate translations from expressed sequence tags. Methods Mol Biol (2009) 0.79
TaxMan: a taxonomic database manager. BMC Bioinformatics (2006) 0.79
The nematode story: Hox gene loss and rapid evolution. Adv Exp Med Biol (2010) 0.79
Expressed sequence tags: analysis and annotation. Methods Mol Biol (2004) 0.78
Association of the matrix attachment region recognition signature with coding regions in Caenorhabditis elegans. BMC Genomics (2007) 0.78
The bacterial catalase from filarial DNA preparations derives from common pseudomonad contaminants and not from Wolbachia endosymbionts. Parasitol Res (2004) 0.77
EST processing: from trace to sequence. Methods Mol Biol (2009) 0.77
Erratum: How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use? RNA (2016) 0.76
Erratum: Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity. Nat Commun (2015) 0.75