Published in BMC Genomics on June 10, 2011
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Saturated linkage map construction in Rubus idaeus using genotyping by sequencing and genome-independent imputation. BMC Genomics (2013) 1.61
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Construction of a high-density genetic map for grape using next generation restriction-site associated DNA sequencing. BMC Plant Biol (2012) 1.47
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A RAD tag derived marker based eggplant linkage map and the location of QTLs determining anthocyanin pigmentation. PLoS One (2012) 1.24
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High-density genetic linkage map construction and identification of fruit-related QTLs in pear using SNP and SSR markers. J Exp Bot (2014) 1.06
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Draft genome sequence of eggplant (Solanum melongena L.): the representative solanum species indigenous to the old world. DNA Res (2014) 1.04
High-density genetic map construction and QTLs analysis of grain yield-related traits in sesame (Sesamum indicum L.) based on RAD-Seq techonology. BMC Plant Biol (2014) 1.04
De novo sequencing of sunflower genome for SNP discovery using RAD (Restriction site Associated DNA) approach. BMC Genomics (2013) 0.99
Enrichment of an intraspecific genetic map of upland cotton by developing markers using parental RAD sequencing. DNA Res (2015) 0.98
Genome-wide DNA polymorphisms in two cultivars of mei (Prunus mume sieb. et zucc.). BMC Genet (2013) 0.98
Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea. Front Plant Sci (2015) 0.98
Genome-wide SNPs lead to strong signals of geographic structure and relatedness patterns in the major arbovirus vector, Aedes aegypti. BMC Genomics (2014) 0.98
Identification of sex-linked SNP markers using RAD sequencing suggests ZW/ZZ sex determination in Pistacia vera L. BMC Genomics (2015) 0.98
Genome-wide association studies and prediction of 17 traits related to phenology, biomass and cell wall composition in the energy grass Miscanthus sinensis. New Phytol (2013) 0.97
Development and characterization of simple sequence repeat markers providing genome-wide coverage and high resolution in maize. DNA Res (2013) 0.94
Genetic linkage maps for Asian and American lotus constructed using novel SSR markers derived from the genome of sequenced cultivar. BMC Genomics (2012) 0.94
Genome wide SNP discovery in flax through next generation sequencing of reduced representation libraries. BMC Genomics (2012) 0.93
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The population genomics of repeated evolution in the blind cavefish Astyanax mexicanus. Mol Biol Evol (2013) 0.91
Development and characterization of microsatellite markers for the Cape gooseberry Physalis peruviana. PLoS One (2011) 0.91
Optimization of linkage mapping strategy and construction of a high-density American lotus linkage map. BMC Genomics (2014) 0.91
Location of chlorogenic acid biosynthesis pathway and polyphenol oxidase genes in a new interspecific anchored linkage map of eggplant. BMC Plant Biol (2014) 0.90
Linkage disequilibrium and genome-wide association analysis for anthocyanin pigmentation and fruit color in eggplant. BMC Genomics (2014) 0.87
Genome-wide identification of SSR and SNP markers from the non-heading Chinese cabbage for comparative genomic analyses. BMC Genomics (2015) 0.87
Large-scale SNP discovery through RNA sequencing and SNP genotyping by targeted enrichment sequencing in cassava (Manihot esculenta Crantz). PLoS One (2014) 0.87
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A ddRAD Based Linkage Map of the Cultivated Strawberry, Fragaria xananassa. PLoS One (2015) 0.84
SNP-based genetic linkage map of tobacco (Nicotiana tabacum L.) using next-generation RAD sequencing. J Biol Res (Thessalon) (2015) 0.82
Genomic DNA enrichment using sequence capture microarrays: a novel approach to discover sequence nucleotide polymorphisms (SNP) in Brassica napus L. PLoS One (2013) 0.82
Phenylpropanoids Accumulation in Eggplant Fruit: Characterization of Biosynthetic Genes and Regulation by a MYB Transcription Factor. Front Plant Sci (2016) 0.81
Rapid SNP discovery and a RAD-based high-density linkage map in jujube (Ziziphus Mill.). PLoS One (2014) 0.81
SNP discovery in common bean by restriction-associated DNA (RAD) sequencing for genetic diversity and population structure analysis. Mol Genet Genomics (2016) 0.80
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The Complete Chloroplast Genome Sequences of the Medicinal Plant Pogostemon cablin. Int J Mol Sci (2016) 0.78
Genome-wide SNP discovery and population structure analysis in pepper (Capsicum annuum) using genotyping by sequencing. BMC Genomics (2016) 0.78
Genome-Wide Identification of SSR and SNP Markers Based on Whole-Genome Re-Sequencing of a Thailand Wild Sacred Lotus (Nelumbo nucifera). PLoS One (2015) 0.78
SNP-Discovery by RAD-Sequencing in a Germplasm Collection of Wild and Cultivated Grapevines (V. vinifera L.). PLoS One (2017) 0.77
Genetic Divergence between Camellia sinensis and Its Wild Relatives Revealed via Genome-Wide SNPs from RAD Sequencing. PLoS One (2016) 0.77
Two different high throughput sequencing approaches identify thousands of de novo genomic markers for the genetically depleted Bornean elephant. PLoS One (2012) 0.77
Quantitative trait loci from identification to exploitation for crop improvement. Plant Cell Rep (2017) 0.77
Thousands of RAD-seq Loci Fully Resolve the Phylogeny of the Highly Disjunct Arctic-Alpine Genus Diapensia (Diapensiaceae). PLoS One (2015) 0.76
RNA-Sequencing Reveals Biological Networks during Table Grapevine ('Fujiminori') Fruit Development. PLoS One (2017) 0.75
New Insights on Eggplant/Tomato/Pepper Synteny and Identification of Eggplant and Pepper Orthologous QTL. Front Plant Sci (2016) 0.75
Development of SSR markers for a Tibetan medicinal plant, Lancea tibetica (Phrymaceae), based on RAD sequencing. Appl Plant Sci (2016) 0.75
Construction of high-resolution genetic maps of Zoysia matrella (L.) Merrill and applications to comparative genomic analysis and QTL mapping of resistance to fall armyworm. BMC Genomics (2016) 0.75
Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants. Plant Methods (2016) 0.75
Transcriptome analysis and molecular marker discovery in Solanum incanum and S. aethiopicum, two close relatives of the common eggplant (Solanum melongena) with interest for breeding. BMC Genomics (2016) 0.75
Characterization of Leaf Transcriptome in Banksia hookeriana. Genomics Proteomics Bioinformatics (2017) 0.75
Mining sequence variations in representative polyploid sugarcane germplasm accessions. BMC Genomics (2017) 0.75
Construction of a high-density genetic map for grape using specific length amplified fragment (SLAF) sequencing. PLoS One (2017) 0.75
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Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers. Genome Res (2006) 5.80
A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS One (2007) 5.62
Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. BMC Bioinformatics (2006) 5.50
Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Mol Biol (2002) 3.80
SciRoKo: a new tool for whole genome microsatellite search and investigation. Bioinformatics (2007) 3.40
High-throughput genotyping with the GoldenGate assay in the complex genome of soybean. Theor Appl Genet (2008) 2.59
An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments. Genome Res (2004) 2.56
AgBase: a functional genomics resource for agriculture. BMC Genomics (2006) 2.53
Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley. BMC Genomics (2005) 2.40
A comparative genetic linkage map of eggplant (Solanum melongena) and its implications for genome evolution in the solanaceae. Genetics (2002) 2.24
Mining for single nucleotide polymorphisms and insertions/deletions in maize expressed sequence tag data. Plant Physiol (2003) 2.05
Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim. BMC Genomics (2010) 2.01
Mining and survey of simple sequence repeats in expressed sequence tags of dicotyledonous species. Genome (2005) 1.79
The chloroplast genome sequence of mungbean (Vigna radiata) determined by high-throughput pyrosequencing: structural organization and phylogenetic relationships. DNA Res (2009) 1.75
Sequencing and analysis of common bean ESTs. Building a foundation for functional genomics. Plant Physiol (2005) 1.61
A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.). BMC Genomics (2009) 1.61
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Diversity in conserved genes in tomato. BMC Genomics (2007) 1.52
SNP discovery by high-throughput sequencing in soybean. BMC Genomics (2010) 1.45
Development of genomic resources for Citrus clementina: characterization of three deep-coverage BAC libraries and analysis of 46,000 BAC end sequences. BMC Genomics (2008) 1.38
An interspecific linkage map of SSR and intronic polymorphism markers in tomato. Theor Appl Genet (2010) 1.36
Assessment of linkage disequilibrium in potato genome with single nucleotide polymorphism markers. Genetics (2006) 1.36
A detailed synteny map of the eggplant genome based on conserved ortholog set II (COSII) markers. Theor Appl Genet (2009) 1.22
Large-scale identification of polymorphic microsatellites using an in silico approach. BMC Bioinformatics (2008) 1.13
A genome-wide analysis of single nucleotide polymorphism diversity in the world's major cereal crops. Plant Biotechnol J (2009) 1.11
Gene-based microsatellite development for mapping and phylogeny studies in eggplant. BMC Genomics (2008) 1.09
Analysis of DNA polymorphisms in sugar beet (Beta vulgaris L.) and development of an SNP-based map of expressed genes. Theor Appl Genet (2007) 1.08
Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor Appl Genet (2009) 1.07
Ontology and diversity of transcript-associated microsatellites mined from a globe artichoke EST database. BMC Genomics (2009) 1.02
Segregation distortion and linkage analysis in eggplant (Solanum melongena L.). Genome (2010) 0.96
Development, characterization, and transferability to other Solanaceae of microsatellite markers in pepper (Capsicum annuum L.). Genome (2007) 0.96
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RAD tag sequencing as a source of SNP markers in Cynara cardunculus L. BMC Genomics (2012) 1.33
A RAD tag derived marker based eggplant linkage map and the location of QTLs determining anthocyanin pigmentation. PLoS One (2012) 1.24
A high-resolution, intraspecific linkage map of pepper (Capsicum annuum L.) and selection of reduced recombinant inbred line subsets for fast mapping. Genome (2007) 1.09
Gene-based microsatellite development for mapping and phylogeny studies in eggplant. BMC Genomics (2008) 1.09
Development and characterization of microsatellite markers in Cynara cardunculus L. Genome (2005) 1.08
Comparative transcriptome profiling of the early response to Magnaporthe oryzae in durable resistant vs susceptible rice (Oryza sativa L.) genotypes. PLoS One (2012) 1.08
Ontology and diversity of transcript-associated microsatellites mined from a globe artichoke EST database. BMC Genomics (2009) 1.02
Aucsia gene silencing causes parthenocarpic fruit development in tomato. Plant Physiol (2008) 0.99
The isolation and mapping of a novel hydroxycinnamoyltransferase in the globe artichoke chlorogenic acid pathway. BMC Plant Biol (2009) 0.99
Isolation and functional characterization of a cDNA coding a hydroxycinnamoyltransferase involved in phenylpropanoid biosynthesis in Cynara cardunculus L. BMC Plant Biol (2007) 0.99
QTL analysis of plant development and fruit traits in pepper and performance of selective phenotyping. Theor Appl Genet (2009) 0.97
Segregation distortion and linkage analysis in eggplant (Solanum melongena L.). Genome (2010) 0.96
Chemical and bioactive quality traits during fruit ripening in eggplant (S. melongena L.) and allied species. J Agric Food Chem (2012) 0.95
The population structure and diversity of eggplant from Asia and the Mediterranean Basin. PLoS One (2013) 0.94
The CC-NB-LRR-type Rdg2a resistance gene confers immunity to the seed-borne barley leaf stripe pathogen in the absence of hypersensitive cell death. PLoS One (2010) 0.92
Genetic mapping and characterization of the globe artichoke (+)-germacrene A synthase gene, encoding the first dedicated enzyme for biosynthesis of the bitter sesquiterpene lactone cynaropicrin. Plant Sci (2012) 0.90
Stress-induced biosynthesis of dicaffeoylquinic acids in globe artichoke. J Agric Food Chem (2008) 0.89
Characterization of health-related compounds in eggplant (Solanum melongena L.) lines derived from introgression of allied species. J Agric Food Chem (2010) 0.89
Genetic mapping and annotation of genomic microsatellites isolated from globe artichoke. Theor Appl Genet (2009) 0.89
Large-scale transcriptome characterization and mass discovery of SNPs in globe artichoke and its related taxa. Plant Biotechnol J (2012) 0.88
Linkage disequilibrium and genome-wide association analysis for anthocyanin pigmentation and fruit color in eggplant. BMC Genomics (2014) 0.87
Isolation and mapping of a C3'H gene (CYP98A49) from globe artichoke, and its expression upon UV-C stress. Plant Cell Rep (2009) 0.87
Emerging knowledge from genome sequencing of crop species. Mol Biotechnol (2012) 0.85
Histological and molecular analysis of Rdg2a barley resistance to leaf stripe. Mol Plant Pathol (2008) 0.84
Genetic mapping and identification of QTL for earliness in the globe artichoke/cultivated cardoon complex. BMC Res Notes (2012) 0.84
Production of novel antioxidative phenolic amides through heterologous expression of the plant's chlorogenic acid biosynthesis genes in yeast. Metab Eng (2009) 0.82
Solanum torvum responses to the root-knot nematode Meloidogyne incognita. BMC Genomics (2013) 0.81
Corrigendum: The genome sequence of the outbreeding globe artichoke constructed de novo incorporating a phase-aware low-pass sequencing strategy of F1 progeny. Sci Rep (2016) 0.81
Strain dependent expression of stress response and virulence genes of Listeria monocytogenes in meat juices as determined by microarray. Int J Food Microbiol (2011) 0.79
De novo genome assembly of the soil-borne fungus and tomato pathogen Pyrenochaeta lycopersici. BMC Genomics (2014) 0.79
Proteomics in globe artichoke: protein extraction and sample complexity reduction by PEG fractionation. Electrophoresis (2009) 0.78
Proteomic characterization of the Rph15 barley resistance gene-mediated defence responses to leaf rust. BMC Genomics (2012) 0.77
2-D DIGE analysis of UV-C radiation-responsive proteins in globe artichoke leaves. Proteomics (2012) 0.77
Identification and mapping of the leaf stripe resistance gene Rdg1a in Hordeum spontaneum. Theor Appl Genet (2009) 0.76
Haplotype variability and identification of new functional alleles at the Rdg2a leaf stripe resistance gene locus. Theor Appl Genet (2013) 0.75
Specific regions in the Sod1 locus of the ericoid mycorrhizal fungus Oidiodendron maius from metal-enriched soils show a different sequence polymorphism. FEMS Microbiol Ecol (2010) 0.75
Retrotransposon-based S-SAP as a platform for the analysis of genetic variation and linkage in globe artichoke. Genome (2006) 0.75