Published in BMC Genomics on August 11, 2010
Identification of SNP and SSR markers in eggplant using RAD tag sequencing. BMC Genomics (2011) 2.04
High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum L.). DNA Res (2012) 1.66
Single-nucleotide polymorphism discovery by high-throughput sequencing in sorghum. BMC Genomics (2011) 1.48
Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics. BMC Genomics (2012) 1.29
Application of genomic tools in plant breeding. Curr Genomics (2012) 1.09
Transcriptome sequencing for SNP discovery across Cucumis melo. BMC Genomics (2012) 1.08
Integrating omic approaches for abiotic stress tolerance in soybean. Front Plant Sci (2014) 1.07
Rapid genotyping of soybean cultivars using high throughput sequencing. PLoS One (2011) 1.06
Prevalence of single nucleotide polymorphism among 27 diverse alfalfa genotypes as assessed by transcriptome sequencing. BMC Genomics (2012) 1.05
De novo genome assembly of the economically important weed horseweed using integrated data from multiple sequencing platforms. Plant Physiol (2014) 1.02
De novo sequencing of sunflower genome for SNP discovery using RAD (Restriction site Associated DNA) approach. BMC Genomics (2013) 0.99
Flexible and scalable genotyping-by-sequencing strategies for population studies. BMC Genomics (2014) 0.98
Genome-wide SNP identification in multiple morphotypes of allohexaploid tall fescue (Festuca arundinacea Schreb). BMC Genomics (2012) 0.93
RNA-seq based SNPs in some agronomically important oleiferous lines of Brassica rapa and their use for genome-wide linkage mapping and specific-region fine mapping. BMC Genomics (2013) 0.92
Identification and characterization of transcript polymorphisms in soybean lines varying in oil composition and content. BMC Genomics (2014) 0.90
Identification of SNPs in RNA-seq data of two cultivars of Glycine max (soybean) differing in drought resistance. Genet Mol Biol (2012) 0.90
A high-throughput SNP array in the amphidiploid species Brassica napus shows diversity in resistance genes. Funct Integr Genomics (2014) 0.86
Differential metabolite profiles during fruit development in high-yielding oil palm mesocarp. PLoS One (2013) 0.85
Genetic characteristics of soybean resistance to HG type 0 and HG type 1.2.3.5.7 of the cyst nematode analyzed by genome-wide association mapping. BMC Genomics (2015) 0.85
Comprehensive evaluation of SNP identification with the Restriction Enzyme-based Reduced Representation Library (RRL) method. BMC Genomics (2012) 0.82
Single nucleotide polymorphism discovery in cutthroat trout subspecies using genome reduction, barcoding, and 454 pyro-sequencing. BMC Genomics (2012) 0.82
Next-generation transcriptome sequencing, SNP discovery and validation in four market classes of peanut, Arachis hypogaea L. Mol Genet Genomics (2015) 0.82
High density linkage mapping of genomic and transcriptomic SNPs for synteny analysis and anchoring the genome sequence of chickpea. Sci Rep (2015) 0.81
SNP discovery in common bean by restriction-associated DNA (RAD) sequencing for genetic diversity and population structure analysis. Mol Genet Genomics (2016) 0.80
Local assemblies of paired-end reduced representation libraries sequenced with the illumina genome analyzer in maize. Int J Plant Genomics (2012) 0.80
Next generation quantitative genetics in plants. Front Plant Sci (2011) 0.79
Identification and characterization of a stachyose synthase gene controlling reduced stachyose content in soybean. Theor Appl Genet (2015) 0.78
An integrated SNP mining and utilization (ISMU) pipeline for next generation sequencing data. PLoS One (2014) 0.78
The Current Status of the Soybean-Soybean Mosaic Virus (SMV) Pathosystem. Front Microbiol (2016) 0.77
Transcriptome Characterization and Functional Marker Development in Sorghum Sudanense. PLoS One (2016) 0.77
Development of genetic markers in Eucalyptus species by target enrichment and exome sequencing. PLoS One (2015) 0.76
Imputing Genotypes in Biallelic Populations from Low-Coverage Sequence Data. Genetics (2015) 0.76
Transcript Polymorphism Rates in Soybean Seed Tissue Are Increased in a Single Transformant of Glycine max. Int J Plant Genomics (2016) 0.75
Enriching Genomic Resources and Marker Development from Transcript Sequences of Jatropha curcas for Microgravity Studies. Int J Genomics (2017) 0.75
Characterizing Two Inter-specific Bin Maps for the Exploration of the QTLs/Genes that Confer Three Soybean Evolutionary Traits. Front Plant Sci (2016) 0.75
Transcriptome Sequencing of Diverse Peanut (Arachis) Wild Species and the Cultivated Species Reveals a Wealth of Untapped Genetic Variability. G3 (Bethesda) (2016) 0.75
Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res (2008) 157.44
The complete genome of an individual by massively parallel DNA sequencing. Nature (2008) 52.81
De novo assembly of human genomes with massively parallel short read sequencing. Genome Res (2009) 45.91
AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res (1995) 45.26
Whole-genome sequencing and variant discovery in C. elegans. Nat Methods (2008) 31.92
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res (2008) 26.36
The impact of next-generation sequencing technology on genetics. Trends Genet (2008) 21.07
Genome sequence of the palaeopolyploid soybean. Nature (2010) 17.82
Emerging technologies in DNA sequencing. Genome Res (2005) 10.64
Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Res (2008) 8.44
SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Nat Methods (2008) 8.26
Next-generation DNA sequencing techniques. N Biotechnol (2009) 6.02
A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing. Nucleic Acids Res (2007) 5.33
A new integrated genetic linkage map of the soybean. Theor Appl Genet (2004) 4.21
A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis. Genetics (2007) 3.54
High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. BMC Genomics (2010) 3.40
Impacts of genetic bottlenecks on soybean genome diversity. Proc Natl Acad Sci U S A (2006) 3.23
Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing. Plant Biotechnol J (2009) 3.22
Complexity reduction of polymorphic sequences (CRoPS): a novel approach for large-scale polymorphism discovery in complex genomes. PLoS One (2007) 2.92
SNP identification in crop plants. Curr Opin Plant Biol (2009) 2.25
High-density integrated linkage map based on SSR markers in soybean. DNA Res (2009) 2.23
Identification of ancient remains through genomic sequencing. Genome Res (2008) 1.72
Ultrafast DNA sequencing on a microchip by a hybrid separation mechanism that gives 600 bases in 6.5 minutes. Proc Natl Acad Sci U S A (2008) 1.26
QTL, additive and epistatic effects for SCN resistance in PI 437654. Theor Appl Genet (2009) 1.20
Estimating DNA coverage and abundance in metagenomes using a gamma approximation. Bioinformatics (2009) 0.97
Genome sequence of the palaeopolyploid soybean. Nature (2010) 17.82
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. Genome Biol (2008) 4.78
Long-term monitoring shows hepatitis B virus resistance to entecavir in nucleoside-naïve patients is rare through 5 years of therapy. Hepatology (2009) 4.00
Enhanced computer vision with Microsoft Kinect sensor: a review. IEEE Trans Cybern (2013) 3.75
Slug antagonizes p53-mediated apoptosis of hematopoietic progenitors by repressing puma. Cell (2005) 3.73
Comparative DNA sequence analysis of wheat and rice genomes. Genome Res (2003) 3.63
Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 1. Generalized Born. J Chem Theory Comput (2012) 3.40
Ultradeep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing. Cancer Res (2007) 3.40
Graph embedding and extensions: a general framework for dimensionality reduction. IEEE Trans Pattern Anal Mach Intell (2007) 3.06
The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms. Genome Res (2003) 2.62
Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation. Proc Natl Acad Sci U S A (2003) 2.52
Root growth maintenance during water deficits: physiology to functional genomics. J Exp Bot (2004) 2.51
Inferring gene regulatory networks from multiple microarray datasets. Bioinformatics (2006) 2.49
B lymphocyte stimulator overexpression in patients with systemic lupus erythematosus: longitudinal observations. Arthritis Rheum (2003) 2.47
An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants. Plant J (2010) 2.41
Visualization of nitric oxide in living cells by a copper-based fluorescent probe. Nat Chem Biol (2006) 2.33
Local production of B lymphocyte stimulator protein and APRIL in arthritic joints of patients with inflammatory arthritis. Arthritis Rheum (2003) 2.21
Ensemble-based virtual screening reveals potential novel antiviral compounds for avian influenza neuraminidase. J Med Chem (2008) 2.14
Understanding regulatory networks and engineering for enhanced drought tolerance in plants. Curr Opin Plant Biol (2006) 1.95
Understanding the unique characteristics of suicide in China: national psychological autopsy study. Biomed Environ Sci (2005) 1.90
Synteny perturbations between wheat homoeologous chromosomes caused by locus duplications and deletions correlate with recombination rates. Proc Natl Acad Sci U S A (2003) 1.90
Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees. Bioinformatics (2002) 1.81
Microarray analysis of chitin elicitation in Arabidopsis thaliana. Mol Plant Pathol (2002) 1.80
Genome-wide DNA methylation analysis reveals novel epigenetic changes in chronic lymphocytic leukemia. Epigenetics (2012) 1.80
Physiological and molecular approaches to improve drought resistance in soybean. Plant Cell Physiol (2009) 1.76
Epidermal growth factor-like domain 7 protects endothelial cells from hyperoxia-induced cell death. Am J Physiol Lung Cell Mol Physiol (2007) 1.75
Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples. Biotechniques (2004) 1.74
Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population. Genome Res (2013) 1.72
Photoaffinity isolation and identification of proteins in cancer cell extracts that bind to platinum-modified DNA. Chembiochem (2009) 1.71
Global protein function annotation through mining genome-scale data in yeast Saccharomyces cerevisiae. Nucleic Acids Res (2004) 1.71
The activation of natural killer cell effector functions by cetuximab-coated, epidermal growth factor receptor positive tumor cells is enhanced by cytokines. Clin Cancer Res (2007) 1.66
Efficacy of entecavir in chronic hepatitis B patients with mildly elevated alanine aminotransferase and biopsy-proven histological damage. Hepatology (2010) 1.61
Long-term treatment with entecavir induces reversal of advanced fibrosis or cirrhosis in patients with chronic hepatitis B. Clin Gastroenterol Hepatol (2010) 1.60
Molecular evolution of lysin motif-type receptor-like kinases in plants. Plant Physiol (2007) 1.59
Musite, a tool for global prediction of general and kinase-specific phosphorylation sites. Mol Cell Proteomics (2010) 1.55
Comparisons among two fertile and three male-sterile mitochondrial genomes of maize. Genetics (2007) 1.53
Targeting CD37-positive lymphoid malignancies with a novel engineered small modular immunopharmaceutical. Blood (2007) 1.51
No supernovae associated with two long-duration gamma-ray bursts. Nature (2006) 1.47
CUBIC: identification of regulatory binding sites through data clustering. J Bioinform Comput Biol (2003) 1.47
catena-Poly[[bis(thiocyanato-kappa N)cadmium(II)]-di-mu-thiourea-kappa(4)S:S]. Acta Crystallogr C (2002) 1.45
Anti-diabetic properties of the Canadian lowbush blueberry Vaccinium angustifolium Ait. Phytomedicine (2006) 1.44
Preoperative rosuvastatin protects patients with coronary artery disease undergoing noncardiac surgery. Cardiology (2015) 1.43
Single feature polymorphism discovery in rice. PLoS One (2007) 1.42
MUFOLD: A new solution for protein 3D structure prediction. Proteins (2010) 1.42
SoyDB: a knowledge database of soybean transcription factors. BMC Plant Biol (2010) 1.40
Characterizing loop dynamics and ligand recognition in human- and avian-type influenza neuraminidases via generalized born molecular dynamics and end-point free energy calculations. J Am Chem Soc (2009) 1.40
Prediction of novel miRNAs and associated target genes in Glycine max. BMC Bioinformatics (2010) 1.39
Cell wall proteome in the maize primary root elongation zone. II. Region-specific changes in water soluble and lightly ionically bound proteins under water deficit. Plant Physiol (2007) 1.37
PRIMEGENS-v2: genome-wide primer design for analyzing DNA methylation patterns of CpG islands. Bioinformatics (2008) 1.35
Computational identification of protein methylation sites through bi-profile Bayes feature extraction. PLoS One (2009) 1.34
BAFF overexpression and accelerated glomerular disease in mice with an incomplete genetic predisposition to systemic lupus erythematosus. Arthritis Rheum (2005) 1.33
Evaluation of candidate reference genes for normalization of quantitative RT-PCR in soybean tissues under various abiotic stress conditions. PLoS One (2012) 1.32
Identification and mapping of the QTL for aluminum tolerance introgressed from the new source, Oryza Rufipogon Griff., into indica rice (Oryza sativa L.). Theor Appl Genet (2002) 1.32
P3DB: a plant protein phosphorylation database. Nucleic Acids Res (2008) 1.31
Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes. BMC Evol Biol (2004) 1.30
Legume transcription factor genes: what makes legumes so special? Plant Physiol (2009) 1.30
Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics. BMC Genomics (2012) 1.29
Transcriptional and physiological responses of Bradyrhizobium japonicum to desiccation-induced stress. J Bacteriol (2007) 1.29
Proteomic analysis of soybean root hairs after infection by Bradyrhizobium japonicum. Mol Plant Microbe Interact (2005) 1.27
Molecular characterization of stress-inducible GmNAC genes in soybean. Mol Genet Genomics (2009) 1.27
Genomic and genetic evidence for the loss of umami taste in bats. Genome Biol Evol (2011) 1.27
Using Internet search engines to obtain medical information: a comparative study. J Med Internet Res (2012) 1.25
Genome-scale gene function prediction using multiple sources of high-throughput data in yeast Saccharomyces cerevisiae. OMICS (2004) 1.25
Understanding protein dispensability through machine-learning analysis of high-throughput data. Bioinformatics (2004) 1.24
A protocol for computer-based protein structure and function prediction. J Vis Exp (2011) 1.23
Root hair systems biology. Trends Plant Sci (2010) 1.21
MicroRNA miR-30 family regulates non-attachment growth of breast cancer cells. BMC Genomics (2013) 1.21
Molecular genetics of heat tolerance and heat shock proteins in cereals. Plant Mol Biol (2002) 1.20
QTL, additive and epistatic effects for SCN resistance in PI 437654. Theor Appl Genet (2009) 1.20
Genome-scale probe and primer design with PRIMEGENS. Methods Mol Biol (2007) 1.20
A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjögren's syndrome at 7q11.23. Nat Genet (2013) 1.19
Mosaic: making biological sense of complex networks. Bioinformatics (2012) 1.19
Water uptake and oil distribution during imbibition of seeds of western white pine (Pinus monticola Dougl. ex D. Don) monitored in vivo using magnetic resonance imaging. Planta (2004) 1.19
Homolog-specific PCR primer design for profiling splice variants. Nucleic Acids Res (2011) 1.19
PROSPECT II: protein structure prediction program for genome-scale applications. Protein Eng (2003) 1.19
Visual event recognition in videos by learning from Web data. IEEE Trans Pattern Anal Mach Intell (2012) 1.18
An oligonucleotide microarray resource for transcriptional profiling of Bradyrhizobium japonicum. Mol Plant Microbe Interact (2007) 1.17
Contrast-enhanced whole-heart coronary MRA at 3.0T for the evaluation of cardiac venous anatomy. Int J Cardiovasc Imaging (2010) 1.17
Regulation of cellular oncosis by uncoupling protein 2. J Biol Chem (2002) 1.17
ProteinDBS: a real-time retrieval system for protein structure comparison. Nucleic Acids Res (2004) 1.17
Pinpointing genes underlying the quantitative trait loci for root-knot nematode resistance in palaeopolyploid soybean by whole genome resequencing. Proc Natl Acad Sci U S A (2013) 1.16
Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing. Nucleic Acids Res (2011) 1.15