Published in PLoS Biol on July 19, 2011
Single-molecule mRNA decay measurements reveal promoter- regulated mRNA stability in yeast. Cell (2011) 2.92
Comparative studies of gene expression and the evolution of gene regulation. Nat Rev Genet (2012) 1.79
Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation. Genome Res (2012) 1.77
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Ccr4-Not complex: the control freak of eukaryotic cells. Crit Rev Biochem Mol Biol (2012) 1.43
The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels. PLoS Genet (2012) 1.25
Evolution at two levels of gene expression in yeast. Genome Res (2013) 1.16
Transcriptome kinetics is governed by a genome-wide coupling of mRNA production and degradation: a role for RNA Pol II. PLoS Genet (2011) 1.16
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Tempo and mode in evolution of transcriptional regulation. PLoS Genet (2012) 1.05
HIV develops indirect cross-resistance to combinatorial RNAi targeting two distinct and spatially distant sites. Mol Ther (2012) 1.01
The PARN deadenylase targets a discrete set of mRNAs for decay and regulates cell motility in mouse myoblasts. PLoS Genet (2012) 1.00
Role of mRNA stability during bacterial adaptation. PLoS One (2013) 0.94
Measurements of the impact of 3' end sequences on gene expression reveal wide range and sequence dependent effects. PLoS Comput Biol (2013) 0.90
Production of Fatty Acid-derived valuable chemicals in synthetic microbes. Front Bioeng Biotechnol (2014) 0.89
Uncoupling of mRNA synthesis and degradation impairs adaptation to host temperature in Cryptococcus neoformans. Mol Microbiol (2013) 0.87
The control of elongation by the yeast Ccr4-not complex. Biochim Biophys Acta (2012) 0.87
mRNA deadenylation by Pan2-Pan3. Biochem Soc Trans (2014) 0.87
Transcriptome profiling to discover putative genes associated with paraquat resistance in goosegrass (Eleusine indica L.). PLoS One (2014) 0.87
Inferring regulatory mechanisms from patterns of evolutionary divergence. Mol Syst Biol (2011) 0.85
The Not5 subunit of the ccr4-not complex connects transcription and translation. PLoS Genet (2014) 0.85
Widespread promoter-mediated coordination of transcription and mRNA degradation. Genome Biol (2012) 0.84
The Rpb4/7 module of RNA polymerase II is required for carbon catabolite repressor protein 4-negative on TATA (Ccr4-not) complex to promote elongation. J Biol Chem (2014) 0.84
Sex Bias and Maternal Contribution to Gene Expression Divergence in Drosophila Blastoderm Embryos. PLoS Genet (2015) 0.83
Post-transcriptional regulation of DNA damage-responsive gene expression. Antioxid Redox Signal (2013) 0.83
Translational Capacity of a Cell Is Determined during Transcription Elongation via the Ccr4-Not Complex. Cell Rep (2016) 0.82
The 5'-3' exoribonuclease Pacman (Xrn1) regulates expression of the heat shock protein Hsp67Bc and the microRNA miR-277-3p in Drosophila wing imaginal discs. RNA Biol (2013) 0.82
Unbiased proteomic analysis of proteins interacting with the HIV-1 5'LTR sequence: role of the transcription factor Meis. Nucleic Acids Res (2012) 0.80
Viroid RNA turnover: characterization of the subgenomic RNAs of potato spindle tuber viroid accumulating in infected tissues provides insights into decay pathways operating in vivo. Nucleic Acids Res (2015) 0.79
Transcriptional priming of cytoplasmic post-transcriptional regulation. Transcription (2011) 0.78
A novel cis-acting element from the 3'UTR of DNA damage-binding protein 2 mRNA links transcriptional and post-transcriptional regulation of gene expression. Nucleic Acids Res (2013) 0.78
Evolution of gene regulation during transcription and translation. Genome Biol Evol (2015) 0.78
Predicting functional and regulatory divergence of a drug resistance transporter gene in the human malaria parasite. BMC Genomics (2015) 0.77
RNA biology and the adaptation of Cryptococcus neoformans to host temperature and stress. Wiley Interdiscip Rev RNA (2014) 0.76
Gene expression as a circular process: cross-talk between transcription and mRNA degradation in eukaryotes; International University of Andalusia (UNIA) Baeza, Spain. RNA Biol (2014) 0.76
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Heritable variation of mRNA decay rates in yeast. Genome Res (2014) 0.75
Coordinated Evolution of Transcriptional and Post-Transcriptional Regulation for Mitochondrial Functions in Yeast Strains. PLoS One (2016) 0.75
The interplay between transcription and mRNA degradation in Saccharomyces cerevisiae. Microb Cell (2017) 0.75
Multiplexed gene control reveals rapid mRNA turnover. Sci Adv (2017) 0.75
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Control of stochasticity in eukaryotic gene expression. Science (2004) 12.85
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An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC Bioinformatics (2006) 11.13
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The highways and byways of mRNA decay. Nat Rev Mol Cell Biol (2007) 8.42
Precision and functional specificity in mRNA decay. Proc Natl Acad Sci U S A (2002) 8.20
The enzymes and control of eukaryotic mRNA turnover. Nat Struct Mol Biol (2004) 7.57
Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast. PLoS Biol (2004) 6.38
Evolutionary changes in cis and trans gene regulation. Nature (2004) 6.24
RNA-binding proteins and post-transcriptional gene regulation. FEBS Lett (2008) 5.00
Mutations in translation initiation factors lead to increased rates of deadenylation and decapping of mRNAs in Saccharomyces cerevisiae. Mol Cell Biol (1999) 4.35
Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLoS Biol (2008) 4.34
Global and local architecture of the mammalian microRNA-transcription factor regulatory network. PLoS Comput Biol (2007) 4.31
Two strategies for gene regulation by promoter nucleosomes. Genome Res (2008) 4.19
Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors. Mol Cell Biol (2004) 3.72
Evidence for domesticated and wild populations of Saccharomyces cerevisiae. PLoS Genet (2005) 3.44
Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster. Proc Natl Acad Sci U S A (2006) 3.27
A yeast hybrid provides insight into the evolution of gene expression regulation. Science (2009) 3.25
Local regulatory variation in Saccharomyces cerevisiae. PLoS Genet (2005) 3.23
Genome-wide analysis of mRNA decay in resting and activated primary human T lymphocytes. Nucleic Acids Res (2002) 3.11
Regulatory divergence in Drosophila revealed by mRNA-seq. Genome Res (2010) 2.69
Messenger RNAs are recruited for nuclear export during transcription. Genes Dev (2001) 2.68
RNA polymerase II subunits link transcription and mRNA decay to translation. Cell (2010) 2.67
Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation. Mol Syst Biol (2008) 2.27
Global control of gene expression in yeast by the Ccr4-Not complex. Gene (2003) 2.22
Control of gene expression during T cell activation: alternate regulation of mRNA transcription and mRNA stability. BMC Genomics (2005) 2.18
The CCR4-NOT complex plays diverse roles in mRNA metabolism. Prog Nucleic Acid Res Mol Biol (2003) 1.95
The relationship between mRNA stability and length in Saccharomyces cerevisiae. Nucleic Acids Res (1986) 1.73
Specific and global regulation of mRNA stability during osmotic stress in Saccharomyces cerevisiae. RNA (2009) 1.66
Stress-dependent coordination of transcriptome and translatome in yeast. PLoS Biol (2009) 1.64
Global analysis of Pub1p targets reveals a coordinate control of gene expression through modulation of binding and stability. Mol Cell Biol (2005) 1.50
Major role for mRNA stability in shaping the kinetics of gene induction. BMC Genomics (2010) 1.46
Yeast shuttling SR proteins Npl3p, Gbp2p, and Hrb1p are part of the translating mRNPs, and Npl3p can function as a translational repressor. Mol Cell Biol (2004) 1.44
Divergence of nucleosome positioning between two closely related yeast species: genetic basis and functional consequences. Mol Syst Biol (2010) 1.44
On the relation between promoter divergence and gene expression evolution. Mol Syst Biol (2008) 1.43
Yeast poly(A)-binding protein Pab1 shuttles between the nucleus and the cytoplasm and functions in mRNA export. RNA (2005) 1.42
Global coordination of transcriptional control and mRNA decay during cellular differentiation. Mol Syst Biol (2010) 1.34
A catalog of stability-associated sequence elements in 3' UTRs of yeast mRNAs. Genome Biol (2005) 1.31
A specific role for the C-terminal region of the Poly(A)-binding protein in mRNA decay. Nucleic Acids Res (2007) 1.29
Comprehensive transcriptional analysis of the oxidative response in yeast. J Biol Chem (2008) 1.25
mRNA stability changes precede changes in steady-state mRNA amounts during hyperosmotic stress. RNA (2009) 1.25
Transcription in the nucleus and mRNA decay in the cytoplasm are coupled processes. Genes Dev (2008) 1.18
Unphosphorylated SR-like protein Npl3 stimulates RNA polymerase II elongation. PLoS One (2008) 1.16
Specific roles for the Ccr4-Not complex subunits in expression of the genome. RNA (2009) 1.12
Heat shock response in yeast involves changes in both transcription rates and mRNA stabilities. PLoS One (2011) 1.07
Whole genome expression profiles of yeast RNA polymerase II core subunit, Rpb4, in stress and nonstress conditions. J Biol Chem (2002) 1.05
Monoubiquitinated H2B is associated with the transcribed region of highly expressed genes in human cells. Nat Cell Biol (2008) 3.08
The histone H2B-specific ubiquitin ligase RNF20/hBRE1 acts as a putative tumor suppressor through selective regulation of gene expression. Genes Dev (2008) 2.48
Requirement of ATM-dependent monoubiquitylation of histone H2B for timely repair of DNA double-strand breaks. Mol Cell (2011) 2.16
Two phases of mitogenic signaling unveil roles for p53 and EGR1 in elimination of inconsistent growth signals. Mol Cell (2011) 1.89
CDK9 directs H2B monoubiquitination and controls replication-dependent histone mRNA 3'-end processing. EMBO Rep (2009) 1.69
CRISPR targeting reveals a reservoir of common phages associated with the human gut microbiome. Genome Res (2012) 1.52
RNF20 and USP44 regulate stem cell differentiation by modulating H2B monoubiquitylation. Mol Cell (2012) 1.52
Epigenetically-inherited centromere and neocentromere DNA replicates earliest in S-phase. PLoS Genet (2010) 1.29
Expression noise and acetylation profiles distinguish HDAC functions. Mol Cell (2012) 1.17
Evolution of nucleosome occupancy: conservation of global properties and divergence of gene-specific patterns. Mol Cell Biol (2011) 1.01
RNF20-RNF40: A ubiquitin-driven link between gene expression and the DNA damage response. FEBS Lett (2011) 0.97
Autocorrelation analysis reveals widespread spatial biases in microarray experiments. BMC Genomics (2007) 0.86
Widespread promoter-mediated coordination of transcription and mRNA degradation. Genome Biol (2012) 0.84
N-methylation of isopeptide bond as a strategy to resist deubiquitinases. Angew Chem Int Ed Engl (2012) 0.84
Functional conservation of the yeast and Arabidopsis RAD54-like genes. Genetics (2008) 0.80
Promoter nucleosome organization shapes the evolution of gene expression. PLoS Genet (2012) 0.77
PBAN receptor: employment of anti-receptor antibodies for its characterization and for development of a microplate binding assay. J Insect Physiol (2009) 0.77
Opposite GC skews at the 5' and 3' ends of genes in unicellular fungi. BMC Genomics (2011) 0.76
Corrigendum: The histone H2B-specific ubiquitin ligase RNF20/hBRE1 acts as a putative tumor suppressor through selective regulation of gene expression. Genes Dev (2017) 0.75
142 Genetic and Nongenetic Determinants of Cellular Architecture in IDH1-Mutant Oligodendrogliomas and Astrocytomas Using Single-Cell Transcriptome Analysis. Neurosurgery (2016) 0.75
High-throughput Phenotyping of Lung Cancer Somatic Mutations. Cancer Cell (2017) 0.75