Published in Cell on November 12, 2010
NMD: a multifaceted response to premature translational termination. Nat Rev Mol Cell Biol (2012) 3.64
Single-molecule mRNA decay measurements reveal promoter- regulated mRNA stability in yeast. Cell (2011) 2.92
Transcription by the multifunctional RNA polymerase I in Trypanosoma brucei functions independently of RPB7. Mol Biochem Parasitol (2011) 2.04
From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II. Cell (2013) 1.87
Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation. Genome Res (2012) 1.77
Viral Nucleases Induce an mRNA Degradation-Transcription Feedback Loop in Mammalian Cells. Cell Host Microbe (2015) 1.46
Ccr4-Not complex: the control freak of eukaryotic cells. Crit Rev Biochem Mol Biol (2012) 1.43
Coupled evolution of transcription and mRNA degradation. PLoS Biol (2011) 1.40
Regulation of transcriptome, translation, and proteome in response to environmental stress in fission yeast. Genome Biol (2012) 1.40
The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels. PLoS Genet (2012) 1.25
Transcriptome kinetics is governed by a genome-wide coupling of mRNA production and degradation: a role for RNA Pol II. PLoS Genet (2011) 1.16
The fate of the messenger is pre-determined: a new model for regulation of gene expression. Biochim Biophys Acta (2013) 1.08
Interrelations between translation and general mRNA degradation in yeast. Wiley Interdiscip Rev RNA (2014) 1.03
Translation initiation factors eIF3 and HCR1 control translation termination and stop codon read-through in yeast cells. PLoS Genet (2013) 1.01
Sequestration of highly expressed mRNAs in cytoplasmic granules, P-bodies, and stress granules enhances cell viability. PLoS Genet (2012) 1.00
The essential polysome-associated RNA-binding protein RBP42 targets mRNAs involved in Trypanosoma brucei energy metabolism. RNA (2012) 0.99
The translation elongation factor eEF1A1 couples transcription to translation during heat shock response. Elife (2014) 0.98
Quantitative proteomic analysis reveals concurrent RNA-protein interactions and identifies new RNA-binding proteins in Saccharomyces cerevisiae. Genome Res (2013) 0.96
Gle1 is a multifunctional DEAD-box protein regulator that modulates Ded1 in translation initiation. J Biol Chem (2011) 0.93
Quantitative measurement of allele-specific protein expression in a diploid yeast hybrid by LC-MS. Mol Syst Biol (2012) 0.93
Genome organization is a major component of gene expression control in response to stress and during the cell division cycle in trypanosomes. Open Biol (2012) 0.93
Functional and biochemical characterization of human eukaryotic translation initiation factor 3 in living cells. Mol Cell Biol (2014) 0.92
Coupling mRNA synthesis and decay. Mol Cell Biol (2014) 0.92
mRNA imprinting: Additional level in the regulation of gene expression. Cell Logist (2011) 0.91
Yeast mRNA cap-binding protein Cbc1/Sto1 is necessary for the rapid reprogramming of translation after hyperosmotic shock. Mol Biol Cell (2011) 0.91
RNA-related nuclear functions of human Pat1b, the P-body mRNA decay factor. Mol Biol Cell (2011) 0.90
How do trypanosomes change gene expression in response to the environment? Protoplasma (2011) 0.90
Quantitative proteomics demonstrates that the RNA polymerase II subunits Rpb4 and Rpb7 dissociate during transcriptional elongation. Mol Cell Proteomics (2013) 0.90
Measurements of the impact of 3' end sequences on gene expression reveal wide range and sequence dependent effects. PLoS Comput Biol (2013) 0.90
The AMP-activated protein kinase Snf1 regulates transcription factor binding, RNA polymerase II activity, and mRNA stability of glucose-repressed genes in Saccharomyces cerevisiae. J Biol Chem (2012) 0.89
Genetic influences on translation in yeast. PLoS Genet (2014) 0.89
The herpes simplex virus 1 virion host shutoff protein enhances translation of viral late mRNAs by preventing mRNA overload. J Virol (2014) 0.89
Basal splicing factors regulate the stability of mature mRNAs in trypanosomes. J Biol Chem (2013) 0.88
Rpb4 subunit functions mainly in mRNA synthesis by RNA polymerase II. J Biol Chem (2014) 0.86
Evidence for a DNA-Based Mechanism of Intron-Mediated Enhancement. Front Plant Sci (2011) 0.85
New suppressors of THO mutations identify Thp3 (Ypr045c)-Csn12 as a protein complex involved in transcription elongation. Mol Cell Biol (2010) 0.85
The Not5 subunit of the ccr4-not complex connects transcription and translation. PLoS Genet (2014) 0.85
Widespread promoter-mediated coordination of transcription and mRNA degradation. Genome Biol (2012) 0.84
Functional diversification of maize RNA polymerase IV and V subtypes via alternative catalytic subunits. Cell Rep (2014) 0.84
Preservation of ranking order in the expression of human Housekeeping genes. PLoS One (2011) 0.84
Post-transcriptional regulation of DNA damage-responsive gene expression. Antioxid Redox Signal (2013) 0.83
The cellular roles of Ccr4-NOT in model and pathogenic fungi-implications for fungal virulence. Front Genet (2013) 0.82
Depletion of the Trypanosome Pumilio domain protein PUF2 or of some other essential proteins causes transcriptome changes related to coding region length. Eukaryot Cell (2014) 0.82
Contributions of transcription and mRNA decay to gene expression dynamics of fission yeast in response to oxidative stress. RNA Biol (2014) 0.81
Systematic dissection of the sequence determinants of gene 3' end mediated expression control. PLoS Genet (2015) 0.80
Transcription-independent functions of an RNA polymerase II subunit, Rpb2, during genome rearrangement in the ciliate, Oxytricha trifallax. Genetics (2014) 0.79
The conserved foot domain of RNA pol II associates with proteins involved in transcriptional initiation and/or early elongation. Genetics (2011) 0.79
The eIF3 complex of Leishmania-subunit composition and mode of recruitment to different cap-binding complexes. Nucleic Acids Res (2015) 0.79
Promoter-Autonomous Functioning in a Controlled Environment using Single Molecule FISH. Sci Rep (2015) 0.78
Transcriptional priming of cytoplasmic post-transcriptional regulation. Transcription (2011) 0.78
Post-transcriptionally regulated expression system in human xenogeneic transplantation models. Mol Ther (2011) 0.78
A novel cis-acting element from the 3'UTR of DNA damage-binding protein 2 mRNA links transcriptional and post-transcriptional regulation of gene expression. Nucleic Acids Res (2013) 0.78
Conceptual Model-based Systems Biology: mapping knowledge and discovering gaps in the mRNA transcription cycle. PLoS One (2012) 0.78
Transcription Impacts the Efficiency of mRNA Translation via Co-transcriptional N6-adenosine Methylation. Cell (2017) 0.78
Translation by remote control. Cell (2010) 0.77
Rpb4/7 facilitates RNA polymerase II CTD dephosphorylation. Nucleic Acids Res (2014) 0.77
The importance of controlling mRNA turnover during cell proliferation. Curr Genet (2016) 0.77
A genetic screen for high copy number suppressors of the synthetic lethality between elg1Δ and srs2Δ in yeast. G3 (Bethesda) (2013) 0.77
Genomic insights into the different layers of gene regulation in yeast. Genet Res Int (2011) 0.76
Apparent ploidy effects on silencing are post-transcriptional at HML and telomeres in Saccharomyces cerevisiae. PLoS One (2012) 0.76
RNA biology and the adaptation of Cryptococcus neoformans to host temperature and stress. Wiley Interdiscip Rev RNA (2014) 0.76
Protein synthesis: an expressive couple. Nat Rev Mol Cell Biol (2011) 0.75
Conceptual modeling of mRNA decay provokes new hypotheses. PLoS One (2014) 0.75
Growth rate controls mRNA turnover in steady and non-steady states. RNA Biol (2016) 0.75
Improving Saccharomyces cerevisiae ethanol production and tolerance via RNA polymerase II subunit Rpb7. Biotechnol Biofuels (2017) 0.75
The interplay between transcription and mRNA degradation in Saccharomyces cerevisiae. Microb Cell (2017) 0.75
Promoter elements regulate cytoplasmic mRNA decay. Cell (2011) 2.50
Proapoptotic BID is an ATM effector in the DNA-damage response. Cell (2005) 2.21
Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis. Cell (2013) 1.81
The RNA polymerase II subunit Rpb4p mediates decay of a specific class of mRNAs. Genes Dev (2005) 1.60
A deleterious mutation in SAMD9 causes normophosphatemic familial tumoral calcinosis. Am J Hum Genet (2006) 1.57
Alopecia, neurological defects, and endocrinopathy syndrome caused by decreased expression of RBM28, a nucleolar protein associated with ribosome biogenesis. Am J Hum Genet (2008) 1.27
The Rpb7p subunit of yeast RNA polymerase II plays roles in the two major cytoplasmic mRNA decay mechanisms. J Cell Biol (2007) 1.26
Transcription in the nucleus and mRNA decay in the cytoplasm are coupled processes. Genes Dev (2008) 1.18
EOBII, a gene encoding a flower-specific regulator of phenylpropanoid volatiles' biosynthesis in petunia. Plant Cell (2010) 1.16
SERKAL syndrome: an autosomal-recessive disorder caused by a loss-of-function mutation in WNT4. Am J Hum Genet (2008) 1.16
Transcriptome kinetics is governed by a genome-wide coupling of mRNA production and degradation: a role for RNA Pol II. PLoS Genet (2011) 1.16
Reverse genetics of floral scent: application of tobacco rattle virus-based gene silencing in Petunia. Plant Physiol (2007) 1.11
The fate of the messenger is pre-determined: a new model for regulation of gene expression. Biochim Biophys Acta (2013) 1.08
Rpb4p, a subunit of RNA polymerase II, mediates mRNA export during stress. Mol Biol Cell (2003) 1.08
Eukaryotic mRNA decay: methodologies, pathways, and links to other stages of gene expression. J Mol Biol (2013) 1.04
Nucleocytoplasmic shuttling of the Rpb4p and Rpb7p subunits of Saccharomyces cerevisiae RNA polymerase II by two pathways. Eukaryot Cell (2006) 1.03
The eukaryotic transcriptional machinery regulates mRNA translation and decay in the cytoplasm. Biochim Biophys Acta (2012) 0.99
Infection stages of the dermatophyte pathogen Trichophyton: microscopic characterization and proteolytic enzymes. Med Mycol (2007) 0.94
Conceptual modeling in systems biology fosters empirical findings: the mRNA lifecycle. PLoS One (2007) 0.90
Rescue of MODY-1 by agonist ligands of hepatocyte nuclear factor-4alpha. J Biol Chem (2003) 0.80
Conceptual Model-based Systems Biology: mapping knowledge and discovering gaps in the mRNA transcription cycle. PLoS One (2012) 0.78