Published in PLoS One on August 26, 2011
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Influenza A virus infection in zebrafish recapitulates mammalian infection and sensitivity to anti-influenza drug treatment. Dis Model Mech (2014) 0.82
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Modeling mucosal candidiasis in larval zebrafish by swimbladder injection. J Vis Exp (2014) 0.79
The Lungfish Transcriptome: A Glimpse into Molecular Evolution Events at the Transition from Water to Land. Sci Rep (2016) 0.79
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What to compare and how: Comparative transcriptomics for Evo-Devo. J Exp Zool B Mol Dev Evol (2015) 0.78
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Improved ROS defense in the swimbladder of a facultative air-breathing erythrinid fish, jeju, compared to a non-air-breathing close relative, traira. J Comp Physiol B (2016) 0.77
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Rapid diversification of FoxP2 in teleosts through gene duplication in the teleost-specific whole genome duplication event. PLoS One (2013) 0.76
Molecular developmental mechanism in polypterid fish provides insight into the origin of vertebrate lungs. Sci Rep (2016) 0.76
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The fatty acid chain elongase, Elovl1, is required for kidney and swim bladder development during zebrafish embryogenesis. Organogenesis (2016) 0.75
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Zebrafish as an Alternative Vertebrate Model for Investigating Developmental Toxicity-The Triadimefon Example. Int J Mol Sci (2017) 0.75
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Manipulating the air-filled zebrafish swim bladder as a neutrophilic inflammation model for acute lung injury. Cell Death Dis (2016) 0.75
Comprehensive and quantitative proteomic analyses of zebrafish plasma reveals conserved protein profiles between genders and between zebrafish and human. Sci Rep (2016) 0.75
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Comparative transcriptome analysis of papilla and skin in the sea cucumber, Apostichopus japonicus. PeerJ (2016) 0.75
Candida parapsilosis Protects Premature Intestinal Epithelial Cells from Invasion and Damage by Candida albicans. Front Pediatr (2017) 0.75
RNA sequencing analysis to capture the transcriptome landscape during skin ulceration syndrome progression in sea cucumber Apostichopus japonicus. BMC Genomics (2016) 0.75
Wolf-Hirschhorn Syndrome Candidate 1 (whsc1) Functions as a Tumor Suppressor by Governing Cell Differentiation. Neoplasia (2017) 0.75
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Accurate whole human genome sequencing using reversible terminator chemistry. Nature (2008) 90.20
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Diversity, topographic differentiation, and positional memory in human fibroblasts. Proc Natl Acad Sci U S A (2002) 6.98
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The Hox genes and their roles in oncogenesis. Nat Rev Cancer (2010) 3.97
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Genomic and genic deletions of the FOX gene cluster on 16q24.1 and inactivating mutations of FOXF1 cause alveolar capillary dysplasia and other malformations. Am J Hum Genet (2009) 3.42
Regulated expression of claudin-4 decreases paracellular conductance through a selective decrease in sodium permeability. J Clin Invest (2001) 3.28
SPARC, a matricellular protein that functions in cellular differentiation and tissue response to injury. J Clin Invest (2001) 3.13
Conservation of gene expression signatures between zebrafish and human liver tumors and tumor progression. Nat Biotechnol (2005) 2.51
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Deep sequencing of the zebrafish transcriptome response to mycobacterium infection. Mol Immunol (2009) 2.42
Characterizing the mouse ES cell transcriptome with Illumina sequencing. Genomics (2008) 2.09
Role of claudin interactions in airway tight junctional permeability. Am J Physiol Lung Cell Mol Physiol (2003) 1.99
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Genetic basis for the evolution of vertebrate mineralized tissue. Proc Natl Acad Sci U S A (2004) 1.56
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15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Genome Res (2003) 1.46
Distinct subdomain organization and molecular composition of a tight junction with adherens junction features. J Cell Sci (2006) 1.45
Regeneration, repair and remembering identity: the three Rs of Hox gene expression. Trends Cell Biol (2009) 1.35
Reconstructing the evolution of the respiratory apparatus in tetrapods. Respir Physiol Neurobiol (2004) 1.31
Structure and autonomic innervation of the swim bladder in the zebrafish (Danio rerio). J Comp Neurol (2006) 1.29
Development of zebrafish swimbladder: The requirement of Hedgehog signaling in specification and organization of the three tissue layers. Dev Biol (2009) 1.26
A novel modulatory mechanism of transforming growth factor-beta signaling through decorin and LRP-1. J Biol Chem (2007) 1.26
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The identification of Hoxc8 target genes. Proc Natl Acad Sci U S A (2005) 1.19
Genome-wide analysis of the homeobox C6 transcriptional network in prostate cancer. Cancer Res (2008) 1.19
Biglycan and decorin induce morphological and cytoskeletal changes involving signalling by the small GTPases RhoA and Rac1 resulting in lung fibroblast migration. J Cell Sci (2003) 1.19
Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. PLoS One (2008) 1.17
The production of extracellular matrix proteins by human passively sensitized airway smooth-muscle cells in culture: the effect of beclomethasone. Am J Respir Crit Care Med (2000) 1.16
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Identification of a Hoxc8-regulated transcriptional network in mouse embryo fibroblast cells. Proc Natl Acad Sci U S A (2006) 1.05
Deconvoluting lung evolution using functional/comparative genomics. Am J Respir Cell Mol Biol (2004) 1.04
Novel regulatory mechanisms for the proteoglycans decorin and biglycan during muscle formation and muscular dystrophy. Matrix Biol (2008) 1.01
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Nkcc1 (Slc12a2) is required for the regulation of endolymph volume in the otic vesicle and swim bladder volume in the zebrafish larva. Development (2009) 0.88
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The role of vasculature and blood circulation in zebrafish swimbladder development. BMC Dev Biol (2010) 0.84
The pattern of surfactant cholesterol during vertebrate evolution and development: does ontogeny recapitulate phylogeny? Reprod Fertil Dev (2003) 0.83
Evolution of the lung surfactant proteins in birds and mammals. Immunogenetics (2007) 0.81
pH regulation and swimbladder function in fish. Respir Physiol Neurobiol (2004) 0.80
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Ultrastructure of the swim bladder of the goldfish, Carassius auratus. Cell Tissue Res (1979) 0.77
Characterization of swim bladder non-inflation (SBN) in angelfish, Pterophyllum scalare (Schultz), and the effect of exposure to methylene blue. J Fish Dis (2008) 0.77
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The zebrafish reference genome sequence and its relationship to the human genome. Nature (2013) 8.52
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Comparative and demographic analysis of orang-utan genomes. Nature (2011) 3.83
FRT-seq: amplification-free, strand-specific transcriptome sequencing. Nat Methods (2010) 3.55
New gene functions in megakaryopoiesis and platelet formation. Nature (2011) 3.14
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Conservation of gene expression signatures between zebrafish and human liver tumors and tumor progression. Nat Biotechnol (2005) 2.51
Transcriptome analysis of zebrafish embryogenesis using microarrays. PLoS Genet (2005) 2.32
Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition. Genome Res (2011) 2.29
Fgf10 regulates hepatopancreatic ductal system patterning and differentiation. Nat Genet (2007) 2.14
Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities. PLoS One (2012) 2.09
The draft genome of the parasitic nematode Trichinella spiralis. Nat Genet (2011) 2.03
An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. Genome Biol (2014) 1.95
Toxicity of silver nanoparticles in zebrafish models. Nanotechnology (2008) 1.89
Exon array CGH: detection of copy-number changes at the resolution of individual exons in the human genome. Am J Hum Genet (2005) 1.78
A full-coverage, high-resolution human chromosome 22 genomic microarray for clinical and research applications. Hum Mol Genet (2002) 1.69
Requirement of vasculogenesis and blood circulation in late stages of liver growth in zebrafish. BMC Dev Biol (2008) 1.62
Mutations in B3GALNT2 cause congenital muscular dystrophy and hypoglycosylation of α-dystroglycan. Am J Hum Genet (2013) 1.47
Convergent extension movements and ciliary function are mediated by ofd1, a zebrafish orthologue of the human oral-facial-digital type 1 syndrome gene. Hum Mol Genet (2008) 1.46
The transcriptional repressor Blimp1/Prdm1 regulates postnatal reprogramming of intestinal enterocytes. Proc Natl Acad Sci U S A (2011) 1.40
RhoA acts downstream of Wnt5 and Wnt11 to regulate convergence and extension movements by involving effectors Rho kinase and Diaphanous: use of zebrafish as an in vivo model for GTPase signaling. Cell Signal (2005) 1.35
Histone deacetylase 3 (hdac3) is specifically required for liver development in zebrafish. Dev Biol (2008) 1.32
Functional diversity for REST (NRSF) is defined by in vivo binding affinity hierarchies at the DNA sequence level. Genome Res (2009) 1.30
Analyses of pancreas development by generation of gfp transgenic zebrafish using an exocrine pancreas-specific elastaseA gene promoter. Exp Cell Res (2006) 1.28
Development of zebrafish swimbladder: The requirement of Hedgehog signaling in specification and organization of the three tissue layers. Dev Biol (2009) 1.26
Comparison of the toxicity of silver, gold and platinum nanoparticles in developing zebrafish embryos. Nanotoxicology (2010) 1.24
Expression analyses of zebrafish transferrin, ifabp, and elastaseB mRNAs as differentiation markers for the three major endodermal organs: liver, intestine, and exocrine pancreas. Dev Dyn (2004) 1.22
An inducible kras(V12) transgenic zebrafish model for liver tumorigenesis and chemical drug screening. Dis Model Mech (2011) 1.17
The role of autophagy in liver cancer: molecular mechanisms and potential therapeutic targets. Biochim Biophys Acta (2013) 1.17
Transcription profiling in human platelets reveals LRRFIP1 as a novel protein regulating platelet function. Blood (2010) 1.16
Identification of the zebrafish maternal and paternal transcriptomes. Development (2013) 1.14
Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics. Nucleic Acids Res (2008) 1.13
A high level of liver-specific expression of oncogenic Kras(V12) drives robust liver tumorigenesis in transgenic zebrafish. Dis Model Mech (2011) 1.13
Hepatic and extrahepatic expression of vitellogenin genes in the zebrafish, Danio rerio. Gene (2005) 1.12
Expressed sequence tag analysis of expression profiles of zebrafish testis and ovary. Gene (2002) 1.11
Modeling liver cancer using zebrafish: a comparative oncogenomics approach. Cell Cycle (2006) 1.10
Inducible and repressable oncogene-addicted hepatocellular carcinoma in Tet-on xmrk transgenic zebrafish. J Hepatol (2011) 1.09
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Recapitulation of fast skeletal muscle development in zebrafish by transgenic expression of GFP under the mylz2 promoter. Dev Dyn (2003) 1.03
Mercury-induced hepatotoxicity in zebrafish: in vivo mechanistic insights from transcriptome analysis, phenotype anchoring and targeted gene expression validation. BMC Genomics (2010) 1.03
Combined activity of the two Gli2 genes of zebrafish play a major role in Hedgehog signaling during zebrafish neurodevelopment. Mol Cell Neurosci (2007) 1.02
Demonstration of site-directed recombination in transgenic zebrafish using the Cre/loxP system. Transgenic Res (2005) 1.01
K-ras/PI3K-Akt signaling is essential for zebrafish hematopoiesis and angiogenesis. PLoS One (2008) 1.01
Zebrafish whole-adult-organism chemogenomics for large-scale predictive and discovery chemical biology. PLoS Genet (2008) 1.00
CCR4-associated factor 1 coordinates the expression of Plasmodium falciparum egress and invasion proteins. Eukaryot Cell (2011) 1.00
A transgenic zebrafish liver tumor model with inducible Myc expression reveals conserved Myc signatures with mammalian liver tumors. Dis Model Mech (2012) 1.00
Morphological and molecular evidence for functional organization along the rostrocaudal axis of the adult zebrafish intestine. BMC Genomics (2010) 0.99
Genomic approaches uncover increasing complexities in the regulatory landscape at the human SCL (TAL1) locus. PLoS One (2010) 0.99
Zebrafish for drug toxicity screening: bridging the in vitro cell-based models and in vivo mammalian models. Expert Opin Drug Metab Toxicol (2011) 0.98
NemaPath: online exploration of KEGG-based metabolic pathways for nematodes. BMC Genomics (2008) 0.96
Population genomics of wild and laboratory zebrafish (Danio rerio). Mol Ecol (2011) 0.96
Transcriptomic analyses of sexual dimorphism of the zebrafish liver and the effect of sex hormones. PLoS One (2013) 0.96
Severe painful vaso-occlusive crises and mortality in a contemporary adult sickle cell anemia cohort study. PLoS One (2013) 0.96
Comprehensive profiling of zebrafish hepatic proximal promoter CpG island methylation and its modification during chemical carcinogenesis. BMC Genomics (2011) 0.95
Transcriptome kinetics of arsenic-induced adaptive response in zebrafish liver. Physiol Genomics (2006) 0.94
Ziwi, the zebrafish homologue of the Drosophila piwi: co-localization with vasa at the embryonic genital ridge and gonad-specific expression in the adults. Mech Dev (2002) 0.93
Xmrk, kras and myc transgenic zebrafish liver cancer models share molecular signatures with subsets of human hepatocellular carcinoma. PLoS One (2014) 0.93
Wnt signaling is required for early development of zebrafish swimbladder. PLoS One (2011) 0.92
Xirp proteins mark injured skeletal muscle in zebrafish. PLoS One (2012) 0.92
Isthmin is a novel secreted angiogenesis inhibitor that inhibits tumour growth in mice. J Cell Mol Med (2011) 0.92
Proteomic analysis of protein profiles during early development of the zebrafish, Danio rerio. Proteomics (2006) 0.90
Localized rbp4 expression in the yolk syncytial layer plays a role in yolk cell extension and early liver development. BMC Dev Biol (2007) 0.90
Genome-wide identification of molecular pathways and biomarkers in response to arsenic exposure in zebrafish liver. PLoS One (2013) 0.89
Metabolomics of developing zebrafish embryos using gas chromatography- and liquid chromatography-mass spectrometry. Mol Biosyst (2013) 0.89
Incorporating zebrafish omics into chemical biology and toxicology. Zebrafish (2010) 0.89
Development of estrogen-responsive transgenic medaka for environmental monitoring of endocrine disrupters. Environ Sci Technol (2005) 0.89
Development of a heat shock inducible gfp transgenic zebrafish line by using the zebrafish hsp27 promoter. Gene (2007) 0.88
Transcription profiling reveals stage- and function-dependent expression patterns in the filarial nematode Brugia malayi. BMC Genomics (2012) 0.88
Ziwi, the zebrafish homologue of the Drosophila piwi: co-localization with vasa at the embryonic genital ridge and gonad-specific expression in the adults. Gene Expr Patterns (2002) 0.88
Molecular cloning of zebrafish and medaka vitellogenin genes and comparison of their expression in response to 17beta-estradiol. Gene (2004) 0.87
Super resolution microscopy reveals that caveolin-1 is required for spatial organization of CRFB1 and subsequent antiviral signaling in zebrafish. PLoS One (2013) 0.87
Molecular evolution of vertebrate goose-type lysozyme genes. J Mol Evol (2003) 0.87
Genomewide expression analysis in zebrafish mind bomb alleles with pancreas defects of different severity identifies putative Notch responsive genes. PLoS One (2008) 0.86
Liver tumor models in transgenic zebrafish: an alternative in vivo approach to study hepatocarcinogenes. Future Oncol (2012) 0.86
Toxicogenomic and phenotypic analyses of bisphenol-A early-life exposure toxicity in zebrafish. PLoS One (2011) 0.86
Vhnf1 acts downstream of Bmp, Fgf, and RA signals to regulate endocrine beta cell development in zebrafish. Dev Biol (2006) 0.86
Zebrafish spotted-microarray for genome-wide expression profiling experiments. Part I: array printing and hybridization. Methods Mol Biol (2009) 0.86
Microinjection and cell transplantation in zebrafish embryos. Methods Mol Biol (2008) 0.86
The interaction of epithelial Ihha and mesenchymal Fgf10 in zebrafish esophageal and swimbladder development. Dev Biol (2011) 0.86
Fluorescent transgenic zebrafish Tg(nkx2.2a:mEGFP) provides a highly sensitive monitoring tool for neurotoxins. PLoS One (2013) 0.86
Maize Ac/Ds transposon system leads to highly efficient germline transmission of transgenes in medaka (Oryzias latipes). Biochimie (2011) 0.86
Genome-wide, whole mount in situ analysis of transcriptional regulators in zebrafish embryos. Dev Biol (2013) 0.85
Generation of living color transgenic zebrafish to trace somatostatin-expressing cells and endocrine pancreas organization. Differentiation (2008) 0.85
Toxicogenomic responses of zebrafish embryos/larvae to tris(1,3-dichloro-2-propyl) phosphate (TDCPP) reveal possible molecular mechanisms of developmental toxicity. Environ Sci Technol (2013) 0.85
The first but not the second thrombospondin type 1 repeat of ADAMTS5 functions as an angiogenesis inhibitor. Biochem Biophys Res Commun (2008) 0.84
Molecular conservation of estrogen-response associated with cell cycle regulation, hormonal carcinogenesis and cancer in zebrafish and human cancer cell lines. BMC Med Genomics (2011) 0.84
The role of vasculature and blood circulation in zebrafish swimbladder development. BMC Dev Biol (2010) 0.84
Finishing the finished human chromosome 22 sequence. Genome Biol (2008) 0.84
Zebrafish spotted-microarray for genome-wide expression profiling experiments: data acquisition and analysis. Methods Mol Biol (2009) 0.84
Tandem-repeated Zebrafish zp3 genes possess oocyte-specific promoters and are insensitive to estrogen induction. Biol Reprod (2006) 0.83
Generation of oocyte-specifically expressed cre transgenic zebrafish for female germline excision of loxP-flanked transgene. Dev Dyn (2008) 0.83
A novel zebrafish kelchlike gene klhl and its human ortholog KLHL display conserved expression patterns in skeletal and cardiac muscles. Gene (2004) 0.82
Liver X receptor agonist T0901317 induced liver perturbation in zebrafish: histological, gene set enrichment and expression analyses. Biochim Biophys Acta (2011) 0.82
A ΔRaf1-ER-inducible oncogenic zebrafish liver cell model identifies hepatocellular carcinoma signatures. J Pathol (2011) 0.82
Targeting protein-protein interactions for parasite control. PLoS One (2011) 0.82