Microbes at their best: first Mol Micro Meeting Würzburg.

PubWeight™: 0.75‹?›

🔗 View Article (PMID 21999404)

Published in Mol Microbiol on October 20, 2011

Authors

Alex Böhm1, Kai Papenfort, Daniel Lopez, Jörg Vogel

Author Affiliations

1: Institute for Molecular Infection Biology, University of Würzburg, Josef-Schneider-Str. 2/ Bau D15, 97080 Würzburg, Germany. alexander.boehm@uni-wuerzburg.de

Articles by these authors

CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature (2011) 17.38

The primary transcriptome of the major human pathogen Helicobacter pylori. Nature (2010) 7.70

Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq. PLoS Genet (2008) 5.23

Regulation by small RNAs in bacteria: expanding frontiers. Mol Cell (2011) 4.68

Fast mapping of short sequences with mismatches, insertions and deletions using index structures. PLoS Comput Biol (2009) 4.24

Concerted peptide trimming by human ERAP1 and ERAP2 aminopeptidase complexes in the endoplasmic reticulum. Nat Immunol (2005) 3.39

The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium. Mol Microbiol (2006) 3.35

SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay. Mol Microbiol (2006) 3.07

Translational control and target recognition by Escherichia coli small RNAs in vivo. Nucleic Acids Res (2007) 3.06

Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA. Genes Dev (2005) 2.93

Small RNA binding to 5' mRNA coding region inhibits translational initiation. Mol Cell (2008) 2.88

An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803. Proc Natl Acad Sci U S A (2011) 2.84

Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation. PLoS Biol (2008) 2.61

Processing-independent CRISPR RNAs limit natural transformation in Neisseria meningitidis. Mol Cell (2013) 2.52

Small non-coding RNAs and the bacterial outer membrane. Curr Opin Microbiol (2006) 2.52

A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. Genes Dev (2007) 2.44

Regulatory RNA in bacterial pathogens. Cell Host Microbe (2010) 2.41

The role of Hfq in bacterial pathogens. Curr Opin Microbiol (2010) 2.40

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proc Natl Acad Sci U S A (2012) 2.39

Dual RNA-seq of pathogen and host. Nat Rev Microbiol (2012) 2.32

Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation. Nat Struct Mol Biol (2009) 2.25

Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome. Nucleic Acids Res (2009) 2.20

An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs. EMBO J (2012) 2.10

Activation of gene expression by small RNA. Curr Opin Microbiol (2009) 2.04

Analysis of the host microRNA response to Salmonella uncovers the control of major cytokines by the let-7 family. EMBO J (2011) 2.03

Identification of regulatory RNAs in Bacillus subtilis. Nucleic Acids Res (2010) 1.99

An antisense RNA inhibits translation by competing with standby ribosomes. Mol Cell (2007) 1.97

Experimental approaches for the discovery and characterization of regulatory small RNA. Curr Opin Microbiol (2009) 1.92

A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles. Mol Microbiol (2008) 1.83

Identification of cyanobacterial non-coding RNAs by comparative genome analysis. Genome Biol (2005) 1.82

Experimental approaches to identify non-coding RNAs. Nucleic Acids Res (2006) 1.80

Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA. Mol Microbiol (2009) 1.77

A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome. Mol Microbiol (2007) 1.72

Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA. Proc Natl Acad Sci U S A (2010) 1.69

Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability. Proc Natl Acad Sci U S A (2009) 1.66

Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA. Mol Microbiol (2011) 1.64

Characterization of the role of ribonucleases in Salmonella small RNA decay. Nucleic Acids Res (2007) 1.62

Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis. Mol Microbiol (2008) 1.62

RelA protein stimulates the activity of RyhB small RNA by acting on RNA-binding protein Hfq. Proc Natl Acad Sci U S A (2012) 1.54

The seed region of a small RNA drives the controlled destruction of the target mRNA by the endoribonuclease RNase E. Mol Cell (2012) 1.49

Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism. Nucleic Acids Res (2010) 1.49

The primary transcriptome of barley chloroplasts: numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase. Plant Cell (2012) 1.47

Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level. Res Microbiol (2009) 1.46

Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon. Proc Natl Acad Sci U S A (2011) 1.46

Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes. RNA Biol (2009) 1.42

Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis. Cell (2013) 1.39

Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA. Mol Microbiol (2012) 1.29

Comparative genomics boosts target prediction for bacterial small RNAs. Proc Natl Acad Sci U S A (2013) 1.29

Noncoding RNA control of the making and breaking of sugars. Genes Dev (2008) 1.28

The mammalian microRNA response to bacterial infections. RNA Biol (2012) 1.27

Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions. Nucleic Acids Res (2011) 1.25

A conserved small RNA promotes discoordinate expression of the glmUS operon mRNA to activate GlmS synthesis. J Mol Biol (2007) 1.24

A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD. Nucleic Acids Res (2011) 1.23

Global regulatory functions of the Staphylococcus aureus endoribonuclease III in gene expression. PLoS Genet (2012) 1.17

The transcriptional landscape of Chlamydia pneumoniae. Genome Biol (2011) 1.16

Differential activation and functional specialization of miR-146 and miR-155 in innate immune sensing. Nucleic Acids Res (2012) 1.16

In vivo expression and purification of aptamer-tagged small RNA regulators. Nucleic Acids Res (2009) 1.15

RNA-mediated regulation in pathogenic bacteria. Cold Spring Harb Perspect Med (2013) 1.11

Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroides. Mol Microbiol (2009) 1.10

Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA. Genes Dev (2013) 1.07

Contribution of Hfq to photooxidative stress resistance and global regulation in Rhodobacter sphaeroides. Mol Microbiol (2011) 1.05

The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair. Proc Natl Acad Sci U S A (2012) 1.04

Functional determinants of the quorum-sensing non-coding RNAs and their roles in target regulation. EMBO J (2013) 1.03

The cyanobacterial homologue of the RNA chaperone Hfq is essential for motility of Synechocystis sp. PCC 6803. Microbiology (2008) 1.02

A small RNA activates CFA synthase by isoform-specific mRNA stabilization. EMBO J (2013) 1.02

Hfq and Hfq-dependent small RNAs are major contributors to multicellular development in Salmonella enterica serovar Typhimurium. RNA Biol (2012) 1.02

Helicobacter pylori interferes with an embryonic stem cell micro RNA cluster to block cell cycle progression. Silence (2011) 0.98

The csgD mRNA as a hub for signal integration via multiple small RNAs. Mol Microbiol (2012) 0.95

Molecular mechanisms involved in Bacillus subtilis biofilm formation. Environ Microbiol (2014) 0.95

Acid stress activation of the sigma(E) stress response in Salmonella enterica serovar Typhimurium. Mol Microbiol (2009) 0.93

Anti-beta 2-glycoprotein I and antiphosphatidylserine antibodies are predictors of arterial thrombosis in patients with antiphospholipid syndrome. Am J Clin Pathol (2004) 0.93

Single-cell analysis of Bacillus subtilis biofilms using fluorescence microscopy and flow cytometry. J Vis Exp (2012) 0.91

Investigating CRISPR RNA Biogenesis and Function Using RNA-seq. Methods Mol Biol (2015) 0.89

Sensory and regulatory RNAs in prokaryotes: a new German research focus. RNA Biol (2007) 0.88

Use of aptamer tagging to identify in vivo protein binding partners of small regulatory RNAs. Methods Mol Biol (2012) 0.88

A candidate approach implicates the secreted Salmonella effector protein SpvB in P-body disassembly. PLoS One (2011) 0.88

Overproduction of flotillin influences cell differentiation and shape in Bacillus subtilis. MBio (2013) 0.87

Small RNAs promote mRNA stability to activate the synthesis of virulence factors. Mol Microbiol (2010) 0.85

A green fluorescent protein (GFP)-based plasmid system to study post-transcriptional control of gene expression in vivo. Methods Mol Biol (2009) 0.84

Selection of organisms for the co-evolution-based study of protein interactions. BMC Bioinformatics (2011) 0.83

Regulatory RNAs in prokaryotes: here, there and everywhere. Mol Microbiol (2009) 0.83

Same same but different: new structural insight into CRISPR-Cas complexes. Mol Cell (2013) 0.83

Individual-based model and simulation of Plasmodium falciparum infected erythrocyte in vitro cultures. J Theor Biol (2007) 0.83

Recombinant factor VIIa for the correction of coagulopathy before emergent craniotomy in blunt trauma patients. J Trauma (2010) 0.83

An endogenous HIV envelope-derived peptide without the terminal NH3+ group anchor is physiologically presented by major histocompatibility complex class I molecules. J Biol Chem (2003) 0.81

Small RNAs of the Bradyrhizobium/Rhodopseudomonas lineage and their analysis. RNA Biol (2012) 0.81

Low dose aerosol fitness at the innate phase of murine infection better predicts virulence amongst clinical strains of Mycobacterium tuberculosis. PLoS One (2012) 0.80