Published in PLoS Genet on June 28, 2012
Decay-Initiating Endoribonucleolytic Cleavage by RNase Y Is Kept under Tight Control via Sequence Preference and Sub-cellular Localisation. PLoS Genet (2015) 1.45
The excludon: a new concept in bacterial antisense RNA-mediated gene regulation. Nat Rev Microbiol (2012) 1.37
Mobile genetic element SCCmec-encoded psm-mec RNA suppresses translation of agrA and attenuates MRSA virulence. PLoS Pathog (2013) 1.16
RNA-mediated regulation in pathogenic bacteria. Cold Spring Harb Perspect Med (2013) 1.11
The double-stranded transcriptome of Escherichia coli. Proc Natl Acad Sci U S A (2014) 1.06
Initiation of mRNA decay in bacteria. Cell Mol Life Sci (2013) 1.04
Ribonuclease III mechanisms of double-stranded RNA cleavage. Wiley Interdiscip Rev RNA (2013) 1.04
Transcriptome-wide analyses of 5'-ends in RNase J mutants of a gram-positive pathogen reveal a role in RNA maturation, regulation and degradation. PLoS Genet (2014) 0.98
Base pairing interaction between 5'- and 3'-UTRs controls icaR mRNA translation in Staphylococcus aureus. PLoS Genet (2013) 0.94
Pervasive transcription: detecting functional RNAs in bacteria. Transcription (2014) 0.90
A non-coding RNA promotes bacterial persistence and decreases virulence by regulating a regulator in Staphylococcus aureus. PLoS Pathog (2014) 0.90
SRD: a Staphylococcus regulatory RNA database. RNA (2015) 0.87
High-throughput identification of promoters and screening of highly active promoter-5'-UTR DNA region with different characteristics from Bacillus thuringiensis. PLoS One (2013) 0.86
Emerging functions for the Staphylococcus aureus RNome. PLoS Pathog (2013) 0.84
RNA Degradation in Staphylococcus aureus: Diversity of Ribonucleases and Their Impact. Int J Genomics (2015) 0.82
The virulence of Salmonella enterica Serovar Typhimurium in the insect model galleria mellonella is impaired by mutations in RNase E and RNase III. Appl Environ Microbiol (2013) 0.80
Overlapping transcription and bacterial RNA removal. Proc Natl Acad Sci U S A (2014) 0.79
Identification of RNAIII-binding proteins in Staphylococcus aureus using tethered RNAs and streptavidin aptamers based pull-down assay. BMC Microbiol (2015) 0.79
Identification and characterization of an operon, msaABCR, that controls virulence and biofilm development in Staphylococcus aureus. BMC Microbiol (2014) 0.78
Methionine biosynthesis in Staphylococcus aureus is tightly controlled by a hierarchical network involving an initiator tRNA-specific T-box riboswitch. PLoS Pathog (2013) 0.77
Mapping of internal monophosphate 5' ends of Bacillus subtilis messenger RNAs and ribosomal RNAs in wild-type and ribonuclease-mutant strains. Nucleic Acids Res (2016) 0.76
Various checkpoints prevent the synthesis of Staphylococcus aureus peptidoglycan hydrolase LytM in the stationary growth phase. RNA Biol (2016) 0.76
Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III in Streptococcus pyogenes. Nucleic Acids Res (2017) 0.75
Characterization of RNA Helicase CshA and Its Role in Protecting mRNAs and Small RNAs of Staphylococcus aureus Strain Newman. Infect Immun (2016) 0.75
Small RNAs of Borrelia burgdorferi: Characterizing Functional Regulators in a Sea of sRNAs . Yale J Biol Med (2017) 0.75
Genome-wide mRNA processing in methanogenic archaea reveals post-transcriptional regulation of ribosomal protein synthesis. Nucleic Acids Res (2017) 0.75
Biogenesis of small RNAs in animals. Nat Rev Mol Cell Biol (2009) 19.99
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature (2011) 17.38
Synthesis of staphylococcal virulence factors is controlled by a regulatory RNA molecule. EMBO J (1993) 11.30
The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets. Bioinformatics (2009) 10.30
Single processing center models for human Dicer and bacterial RNase III. Cell (2004) 8.19
The Listeria transcriptional landscape from saprophytism to virulence. Nature (2009) 5.88
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq. PLoS Genet (2008) 5.23
Fast mapping of short sequences with mismatches, insertions and deletions using index structures. PLoS Comput Biol (2009) 4.24
The distributions, mechanisms, and structures of metabolite-binding riboswitches. Genome Biol (2007) 3.80
Staphylococcus aureus RNAIII and the endoribonuclease III coordinately regulate spa gene expression. EMBO J (2005) 2.95
Function, mechanism and regulation of bacterial ribonucleases. FEMS Microbiol Rev (1999) 2.90
Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism. Genes Dev (2007) 2.86
Ribonucleases J1 and J2: two novel endoribonucleases in B.subtilis with functional homology to E.coli RNase E. Nucleic Acids Res (2005) 2.74
Antisense RNAs in bacteria and their genetic elements. Adv Genet (2002) 2.68
3' exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli. Proc Natl Acad Sci U S A (1998) 2.56
Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains. Proc Natl Acad Sci U S A (2005) 2.55
Small toxic proteins and the antisense RNAs that repress them. Microbiol Mol Biol Rev (2008) 2.42
Lost in translation: the influence of ribosomes on bacterial mRNA decay. Genes Dev (2005) 2.28
Structural insight into the mechanism of double-stranded RNA processing by ribonuclease III. Cell (2006) 2.15
Wall teichoic acid function, biosynthesis, and inhibition. Chembiochem (2010) 2.15
Autoregulation of RNase III operon by mRNA processing. EMBO J (1989) 2.11
Maturation of the 5' end of Bacillus subtilis 16S rRNA by the essential ribonuclease YkqC/RNase J1. Mol Microbiol (2007) 2.10
All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay. Nat Rev Mol Cell Biol (2010) 2.07
RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis. EMBO J (2009) 1.99
An antisense RNA inhibits translation by competing with standby ribosomes. Mol Cell (2007) 1.97
Inhibition of rot translation by RNAIII, a key feature of agr function. Mol Microbiol (2006) 1.90
Genome-wide antisense transcription drives mRNA processing in bacteria. Proc Natl Acad Sci U S A (2011) 1.89
Endonucleolytic initiation of mRNA decay in Escherichia coli. Prog Mol Biol Transl Sci (2009) 1.87
A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation. Nucleic Acids Res (2009) 1.81
Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB. Nucleic Acids Res (2005) 1.80
Characterization of the role of ribonucleases in Salmonella small RNA decay. Nucleic Acids Res (2007) 1.62
mRNA processing by RNases J1 and J2 affects Bacillus subtilis gene expression on a global scale. Mol Microbiol (2008) 1.61
RNase III stimulates the translation of the cIII gene of bacteriophage lambda. Proc Natl Acad Sci U S A (1987) 1.54
Cartography of methicillin-resistant S. aureus transcripts: detection, orientation and temporal expression during growth phase and stress conditions. PLoS One (2010) 1.46
An RNA pyrophosphohydrolase triggers 5'-exonucleolytic degradation of mRNA in Bacillus subtilis. Mol Cell (2011) 1.45
A stepwise model for double-stranded RNA processing by ribonuclease III. Mol Microbiol (2007) 1.44
Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes. RNA Biol (2009) 1.42
The Staphylococcus aureus RNome and its commitment to virulence. PLoS Pathog (2011) 1.39
The group A Streptococcus small regulatory RNA FasX enhances streptokinase activity by increasing the stability of the ska mRNA transcript. Mol Microbiol (2010) 1.37
Three essential ribonucleases-RNase Y, J1, and III-control the abundance of a majority of Bacillus subtilis mRNAs. PLoS Genet (2012) 1.35
Escherichia coli ribonuclease III: affinity purification of hexahistidine-tagged enzyme and assays for substrate binding and cleavage. Methods Enzymol (2001) 1.35
Mini-III, an unusual member of the RNase III family of enzymes, catalyses 23S ribosomal RNA maturation in B. subtilis. Mol Microbiol (2008) 1.33
Identification of differentially expressed small non-protein-coding RNAs in Staphylococcus aureus displaying both the normal and the small-colony variant phenotype. J Mol Med (Berl) (2010) 1.32
Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays. Nucleic Acids Res (2010) 1.32
Endoribonuclease RNase III is essential in Bacillus subtilis. Mol Microbiol (2000) 1.31
Staphylococcus aureus RNAIII binds to two distant regions of coa mRNA to arrest translation and promote mRNA degradation. PLoS Pathog (2010) 1.27
Genetic uncoupling of the dsRNA-binding and RNA cleavage activities of the Escherichia coli endoribonuclease RNase III--the effect of dsRNA binding on gene expression. Mol Microbiol (1998) 1.26
Transfer RNA-mediated antitermination in vitro. Nucleic Acids Res (2002) 1.24
The mechanism of RNase III action: how dicer dices. Curr Top Microbiol Immunol (2008) 1.21
Characterization of components of the Staphylococcus aureus mRNA degradosome holoenzyme-like complex. J Bacteriol (2011) 1.18
Identification of the gene encoding the 5S ribosomal RNA maturase in Bacillus subtilis: mature 5S rRNA is dispensable for ribosome function. RNA (2001) 1.16
Messenger RNA Turnover Processes in Escherichia coli, Bacillus subtilis, and Emerging Studies in Staphylococcus aureus. Int J Microbiol (2009) 1.15
Mechanism of action of Escherichia coli ribonuclease III. Stringent chemical requirement for the glutamic acid 117 side chain and Mn2+ rescue of the Glu117Asp mutant. Biochemistry (2001) 1.12
Processing of Bacillus subtilis small cytoplasmic RNA: evidence for an additional endonuclease cleavage site. Nucleic Acids Res (2007) 1.12
Stabilization of Clostridium perfringens collagenase mRNA by VR-RNA-dependent cleavage in 5' leader sequence. Mol Microbiol (2010) 1.11
RNase III autoregulation: structure and function of rncO, the posttranscriptional "operator". RNA (1996) 1.10
Messenger RNA decay and maturation in Bacillus subtilis. Prog Mol Biol Transl Sci (2009) 1.09
Bacterial translational control at atomic resolution. Trends Genet (2003) 1.08
Mutational analysis of the nuclease domain of Escherichia coli ribonuclease III. Identification of conserved acidic residues that are important for catalytic function in vitro. Biochemistry (2004) 1.06
The major cold shock gene, cspA, is involved in the susceptibility of Staphylococcus aureus to an antimicrobial peptide of human cathepsin G. Infect Immun (2003) 1.05
BsrG/SR4 from Bacillus subtilis--the first temperature-dependent type I toxin-antitoxin system. Mol Microbiol (2012) 1.05
Regulation of the small regulatory RNA MicA by ribonuclease III: a target-dependent pathway. Nucleic Acids Res (2010) 1.04
Characterization of RNA sequence determinants and antideterminants of processing reactivity for a minimal substrate of Escherichia coli ribonuclease III. Nucleic Acids Res (2006) 1.04
Maturation of precursor 10Sa RNA in Escherichia coli is a two-step process: the first reaction is catalyzed by RNase III in presence of Mn2+. Biochimie (1990) 1.02
Regulated RNA stability in the Gram positives. Curr Opin Microbiol (2011) 0.96
Bacillus subtilis RNase III cleaves both 5'- and 3'-sites of the small cytoplasmic RNA precursor. J Biol Chem (1998) 0.96
Staphylococcus aureus endoribonuclease III purification and properties. Methods Enzymol (2008) 0.91
Autoregulation of AbsB (RNase III) expression in Streptomyces coelicolor by endoribonucleolytic cleavage of absB operon transcripts. J Bacteriol (2008) 0.91
Mutational analysis of an RNA internal loop as a reactivity epitope for Escherichia coli ribonuclease III substrates. Biochemistry (2003) 0.89
Probing mRNA structure and sRNA-mRNA interactions in bacteria using enzymes and lead(II). Methods Mol Biol (2009) 0.88
The production of extracellular proteins is regulated by ribonuclease III via two different pathways in Staphylococcus aureus. PLoS One (2011) 0.81
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature (2011) 17.38
Association between Staphylococcus aureus strains carrying gene for Panton-Valentine leukocidin and highly lethal necrotising pneumonia in young immunocompetent patients. Lancet (2002) 10.26
The primary transcriptome of the major human pathogen Helicobacter pylori. Nature (2010) 7.70
Relationships between Staphylococcus aureus genetic background, virulence factors, agr groups (alleles), and human disease. Infect Immun (2002) 7.34
Staphylococcus aureus Panton-Valentine leukocidin causes necrotizing pneumonia. Science (2007) 7.06
Community-acquired methicillin-resistant Staphylococcus aureus infections in France: emergence of a single clone that produces Panton-Valentine leukocidin. Clin Infect Dis (2002) 5.75
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq. PLoS Genet (2008) 5.23
Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity. Nat Genet (2004) 4.93
Regulation by small RNAs in bacteria: expanding frontiers. Mol Cell (2011) 4.68
Changing profile of infective endocarditis: results of a 1-year survey in France. JAMA (2002) 4.48
Fast mapping of short sequences with mismatches, insertions and deletions using index structures. PLoS Comput Biol (2009) 4.24
Global distribution of Panton-Valentine leukocidin--positive methicillin-resistant Staphylococcus aureus, 2006. Emerg Infect Dis (2007) 3.98
A single amino acid mutation in the PA subunit of the influenza virus RNA polymerase inhibits endonucleolytic cleavage of capped RNAs. J Virol (2002) 3.37
The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium. Mol Microbiol (2006) 3.35
SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay. Mol Microbiol (2006) 3.07
Translational control and target recognition by Escherichia coli small RNAs in vivo. Nucleic Acids Res (2007) 3.06
Staphylococcus aureus RNAIII and the endoribonuclease III coordinately regulate spa gene expression. EMBO J (2005) 2.95
Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA. Genes Dev (2005) 2.93
Small RNA binding to 5' mRNA coding region inhibits translational initiation. Mol Cell (2008) 2.88
Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism. Genes Dev (2007) 2.86
An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803. Proc Natl Acad Sci U S A (2011) 2.84
Staphylococcus aureus Panton-Valentine leukocidin directly targets mitochondria and induces Bax-independent apoptosis of human neutrophils. J Clin Invest (2005) 2.82
Antisense RNAs in bacteria and their genetic elements. Adv Genet (2002) 2.68
Isotope-labeled protein standards: toward absolute quantitative proteomics. Mol Cell Proteomics (2007) 2.63
Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation. PLoS Biol (2008) 2.61
Processing-independent CRISPR RNAs limit natural transformation in Neisseria meningitidis. Mol Cell (2013) 2.52
A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. Genes Dev (2007) 2.44
Regulatory RNA in bacterial pathogens. Cell Host Microbe (2010) 2.41
The role of Hfq in bacterial pathogens. Curr Opin Microbiol (2010) 2.40
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proc Natl Acad Sci U S A (2012) 2.39
Dual RNA-seq of pathogen and host. Nat Rev Microbiol (2012) 2.32
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation. Nat Struct Mol Biol (2009) 2.25
Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome. Nucleic Acids Res (2009) 2.20
An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs. EMBO J (2012) 2.10
The role of RNAs in the regulation of virulence-gene expression. Curr Opin Microbiol (2006) 2.09
Activation of gene expression by small RNA. Curr Opin Microbiol (2009) 2.04
Analysis of the host microRNA response to Salmonella uncovers the control of major cytokines by the let-7 family. EMBO J (2011) 2.03
Identification of regulatory RNAs in Bacillus subtilis. Nucleic Acids Res (2010) 1.99
Structured mRNAs regulate translation initiation by binding to the platform of the ribosome. Cell (2007) 1.97
Preeminence of Staphylococcus aureus in infective endocarditis: a 1-year population-based survey. Clin Infect Dis (2012) 1.97
An antisense RNA inhibits translation by competing with standby ribosomes. Mol Cell (2007) 1.97
Experimental approaches for the discovery and characterization of regulatory small RNA. Curr Opin Microbiol (2009) 1.92
Are host genetics the predominant determinant of persistent nasal Staphylococcus aureus carriage in humans? J Infect Dis (2010) 1.92
Molecular diagnosis of infective endocarditis by PCR amplification and direct sequencing of DNA from valve tissue. J Clin Microbiol (2003) 1.90
Specific real-time polymerase chain reaction places Kingella kingae as the most common cause of osteoarticular infections in young children. Pediatr Infect Dis J (2007) 1.89
Effect of antibiotics on Staphylococcus aureus producing Panton-Valentine leukocidin. Antimicrob Agents Chemother (2007) 1.84
A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles. Mol Microbiol (2008) 1.83
Identification of cyanobacterial non-coding RNAs by comparative genome analysis. Genome Biol (2005) 1.82
A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation. Nucleic Acids Res (2009) 1.81
Experimental approaches to identify non-coding RNAs. Nucleic Acids Res (2006) 1.80
Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA. Mol Microbiol (2009) 1.77
Neutralization of Staphylococcus aureus Panton Valentine leukocidin by intravenous immunoglobulin in vitro. J Infect Dis (2004) 1.76
Outcome and treatment of Bartonella endocarditis. Arch Intern Med (2003) 1.74
A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome. Mol Microbiol (2007) 1.72
Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA. Proc Natl Acad Sci U S A (2010) 1.69
High-resolution transcriptome maps reveal strain-specific regulatory features of multiple Campylobacter jejuni isolates. PLoS Genet (2013) 1.67
The staphylococcal toxin Panton-Valentine Leukocidin targets human C5a receptors. Cell Host Microbe (2013) 1.66
Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability. Proc Natl Acad Sci U S A (2009) 1.66
RNA loop-loop interactions as dynamic functional motifs. Biochimie (2002) 1.65
Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA. Mol Microbiol (2011) 1.64
Pediatric bone and joint infections caused by Panton-Valentine leukocidin-positive Staphylococcus aureus. Pediatr Infect Dis J (2007) 1.64
Characterization of the role of ribonucleases in Salmonella small RNA decay. Nucleic Acids Res (2007) 1.62
Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis. Mol Microbiol (2008) 1.62
Virulence determinants in community and hospital meticillin-resistant Staphylococcus aureus. J Hosp Infect (2007) 1.57
RelA protein stimulates the activity of RyhB small RNA by acting on RNA-binding protein Hfq. Proc Natl Acad Sci U S A (2012) 1.54
Global distribution and evolution of Panton-Valentine leukocidin-positive methicillin-susceptible Staphylococcus aureus, 1981-2007. J Infect Dis (2010) 1.54
Sensing of 'danger signals' and pathogen-associated molecular patterns defines binary signaling pathways 'upstream' of Toll. Nat Immunol (2008) 1.54
Comparative prevalence of superantigen genes in Staphylococcus aureus isolates causing sepsis with and without septic shock. Clin Infect Dis (2005) 1.53
The cspA mRNA is a thermosensor that modulates translation of the cold-shock protein CspA. Mol Cell (2010) 1.52
The seed region of a small RNA drives the controlled destruction of the target mRNA by the endoribonuclease RNase E. Mol Cell (2012) 1.49
Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism. Nucleic Acids Res (2010) 1.49
Community-acquired methicillin-resistant Staphylococcus aureus isolated in Switzerland contains the Panton-Valentine leukocidin or exfoliative toxin genes. J Clin Microbiol (2004) 1.48
A history of Panton-Valentine leukocidin (PVL)-associated infection protects against death in PVL-associated pneumonia. Vaccine (2011) 1.48
Panton-valentine leukocidin enhances the severity of community-associated methicillin-resistant Staphylococcus aureus rabbit osteomyelitis. PLoS One (2009) 1.48
The primary transcriptome of barley chloroplasts: numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase. Plant Cell (2012) 1.47
Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level. Res Microbiol (2009) 1.46
Cartography of methicillin-resistant S. aureus transcripts: detection, orientation and temporal expression during growth phase and stress conditions. PLoS One (2010) 1.46
Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon. Proc Natl Acad Sci U S A (2011) 1.46
Detection of new methicillin-resistant Staphylococcus aureus clones containing the toxic shock syndrome toxin 1 gene responsible for hospital- and community-acquired infections in France. J Clin Microbiol (2006) 1.46
Contribution of a broad range polymerase chain reaction to the diagnosis of osteoarticular infections caused by Kingella kingae: description of twenty-four recent pediatric diagnoses. Pediatr Infect Dis J (2005) 1.45
Quantitative real-time Legionella PCR for environmental water samples: data interpretation. Appl Environ Microbiol (2006) 1.44
Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes. RNA Biol (2009) 1.42