1
|
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
|
Science
|
2012
|
4.41
|
2
|
Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom.
|
Science
|
2012
|
4.11
|
3
|
Guidelines for the next 10 years of proteomics.
|
Proteomics
|
2006
|
3.61
|
4
|
Physiological proteomics of the uncultured endosymbiont of Riftia pachyptila.
|
Science
|
2007
|
3.03
|
5
|
Proteomics of protein secretion by Bacillus subtilis: separating the "secrets" of the secretome.
|
Microbiol Mol Biol Rev
|
2004
|
2.67
|
6
|
Bacillus subtilis functional genomics: global characterization of the stringent response by proteome and transcriptome analysis.
|
J Bacteriol
|
2002
|
2.47
|
7
|
Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism.
|
Science
|
2012
|
2.38
|
8
|
Repair of global regulators in Staphylococcus aureus 8325 and comparative analysis with other clinical isolates.
|
Infect Immun
|
2010
|
2.33
|
9
|
Transcriptome and proteome analysis of Bacillus subtilis gene expression in response to superoxide and peroxide stress.
|
Microbiology
|
2004
|
1.96
|
10
|
Anaerobic gene expression in Staphylococcus aureus.
|
J Bacteriol
|
2007
|
1.95
|
11
|
Role of the Fur regulon in iron transport in Bacillus subtilis.
|
J Bacteriol
|
2006
|
1.84
|
12
|
Proteomic approach to understanding antibiotic action.
|
Antimicrob Agents Chemother
|
2003
|
1.78
|
13
|
A comprehensive proteome map of growing Bacillus subtilis cells.
|
Proteomics
|
2004
|
1.78
|
14
|
Influence of the two-component system SaeRS on global gene expression in two different Staphylococcus aureus strains.
|
J Bacteriol
|
2006
|
1.76
|
15
|
Global characterization of disulfide stress in Bacillus subtilis.
|
J Bacteriol
|
2003
|
1.75
|
16
|
Physiological characterization of a heme-deficient mutant of Staphylococcus aureus by a proteomic approach.
|
J Bacteriol
|
2003
|
1.69
|
17
|
Transcriptional profiling of gene expression in response to glucose in Bacillus subtilis: regulation of the central metabolic pathways.
|
Metab Eng
|
2003
|
1.64
|
18
|
Molecular discrimination of responders and nonresponders to anti-TNF alpha therapy in rheumatoid arthritis by etanercept.
|
Arthritis Res Ther
|
2008
|
1.59
|
19
|
Two minimal Tat translocases in Bacillus.
|
Mol Microbiol
|
2004
|
1.58
|
20
|
An ancient pathway combining carbon dioxide fixation with the generation and utilization of a sodium ion gradient for ATP synthesis.
|
PLoS One
|
2012
|
1.57
|
21
|
Genome engineering reveals large dispensable regions in Bacillus subtilis.
|
Mol Biol Evol
|
2003
|
1.55
|
22
|
Host imprints on bacterial genomes--rapid, divergent evolution in individual patients.
|
PLoS Pathog
|
2010
|
1.54
|
23
|
Spx is a global effector impacting stress tolerance and biofilm formation in Staphylococcus aureus.
|
J Bacteriol
|
2006
|
1.52
|
24
|
Elevated type I interferon-like activity in a subset of multiple sclerosis patients: molecular basis and clinical relevance.
|
J Neuroinflammation
|
2012
|
1.52
|
25
|
The influence of agr and sigmaB in growth phase dependent regulation of virulence factors in Staphylococcus aureus.
|
Proteomics
|
2004
|
1.51
|
26
|
Redox sensing by a Rex-family repressor is involved in the regulation of anaerobic gene expression in Staphylococcus aureus.
|
Mol Microbiol
|
2010
|
1.49
|
27
|
Bacillus subtilis: from soil bacterium to super-secreting cell factory.
|
Microb Cell Fact
|
2013
|
1.46
|
28
|
The sigmaB regulon in Staphylococcus aureus and its regulation.
|
Int J Med Microbiol
|
2006
|
1.43
|
29
|
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis.
|
J Bacteriol
|
2005
|
1.35
|
30
|
A comprehensive proteomics and transcriptomics analysis of Bacillus subtilis salt stress adaptation.
|
J Bacteriol
|
2009
|
1.35
|
31
|
S-cysteinylation is a general mechanism for thiol protection of Bacillus subtilis proteins after oxidative stress.
|
J Biol Chem
|
2007
|
1.33
|
32
|
A tyrosine kinase and its activator control the activity of the CtsR heat shock repressor in B. subtilis.
|
EMBO J
|
2005
|
1.33
|
33
|
Integrated network reconstruction, visualization and analysis using YANAsquare.
|
BMC Bioinformatics
|
2007
|
1.32
|
34
|
Selective contribution of the twin-arginine translocation pathway to protein secretion in Bacillus subtilis.
|
J Biol Chem
|
2002
|
1.32
|
35
|
A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
|
PLoS One
|
2009
|
1.27
|
36
|
Nitric oxide stress induces different responses but mediates comparable protein thiol protection in Bacillus subtilis and Staphylococcus aureus.
|
J Bacteriol
|
2008
|
1.27
|
37
|
Proteomics uncovers extreme heterogeneity in the Staphylococcus aureus exoproteome due to genomic plasticity and variant gene regulation.
|
Proteomics
|
2010
|
1.27
|
38
|
Proteomic characterization of the whole secretome of Legionella pneumophila and functional analysis of outer membrane vesicles.
|
Infect Immun
|
2008
|
1.24
|
39
|
Transcriptional organization and posttranscriptional regulation of the Bacillus subtilis branched-chain amino acid biosynthesis genes.
|
J Bacteriol
|
2004
|
1.24
|
40
|
Structure-function analysis of PrsA reveals roles for the parvulin-like and flanking N- and C-terminal domains in protein folding and secretion in Bacillus subtilis.
|
J Biol Chem
|
2004
|
1.24
|
41
|
Fluorescence thiol modification assay: oxidatively modified proteins in Bacillus subtilis.
|
Mol Microbiol
|
2005
|
1.23
|
42
|
Proteomic analysis of antioxidant strategies of Staphylococcus aureus: diverse responses to different oxidants.
|
Proteomics
|
2008
|
1.21
|
43
|
Staphylococcus aureus carriers neutralize superantigens by antibodies specific for their colonizing strain: a potential explanation for their improved prognosis in severe sepsis.
|
J Infect Dis
|
2006
|
1.21
|
44
|
In-depth profiling of the LiaR response of Bacillus subtilis.
|
J Bacteriol
|
2010
|
1.20
|
45
|
Fine-tuning in regulation of Clp protein content in Bacillus subtilis.
|
J Bacteriol
|
2004
|
1.20
|
46
|
MurAA, catalysing the first committed step in peptidoglycan biosynthesis, is a target of Clp-dependent proteolysis in Bacillus subtilis.
|
Mol Microbiol
|
2004
|
1.20
|
47
|
Protein aggregation in Escherichia coli: role of proteases.
|
FEMS Microbiol Lett
|
2002
|
1.19
|
48
|
Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.
|
Nat Commun
|
2010
|
1.19
|
49
|
The extracellular proteome of Bacillus subtilis under secretion stress conditions.
|
Mol Microbiol
|
2003
|
1.18
|
50
|
Dynamics of protein phosphorylation on Ser/Thr/Tyr in Bacillus subtilis.
|
Proteomics
|
2007
|
1.17
|
51
|
Bacillus subtilis during feast and famine: visualization of the overall regulation of protein synthesis during glucose starvation by proteome analysis.
|
Genome Res
|
2003
|
1.17
|
52
|
Genome-wide responses to carbonyl electrophiles in Bacillus subtilis: control of the thiol-dependent formaldehyde dehydrogenase AdhA and cysteine proteinase YraA by the MerR-family regulator YraB (AdhR).
|
Mol Microbiol
|
2008
|
1.16
|
53
|
Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use.
|
Proc Natl Acad Sci U S A
|
2012
|
1.14
|
54
|
Proteome analyses of Staphylococcus aureus in growing and non-growing cells: a physiological approach.
|
Int J Med Microbiol
|
2005
|
1.14
|
55
|
Salt stress adaptation of Bacillus subtilis: a physiological proteomics approach.
|
Proteomics
|
2006
|
1.14
|
56
|
The extracellular proteome of Bacillus licheniformis grown in different media and under different nutrient starvation conditions.
|
Proteomics
|
2006
|
1.13
|
57
|
Transcriptome and proteome analysis of Bacillus subtilis gene expression modulated by amino acid availability.
|
J Bacteriol
|
2002
|
1.13
|
58
|
Diamide triggers mainly S Thiolations in the cytoplasmic proteomes of Bacillus subtilis and Staphylococcus aureus.
|
J Bacteriol
|
2009
|
1.12
|
59
|
Clp-dependent proteolysis down-regulates central metabolic pathways in glucose-starved Bacillus subtilis.
|
J Bacteriol
|
2007
|
1.11
|
60
|
Proteomic analysis of Legionella-containing phagosomes isolated from Dictyostelium.
|
Int J Med Microbiol
|
2009
|
1.11
|
61
|
The tyrosine kinase McsB is a regulated adaptor protein for ClpCP.
|
EMBO J
|
2007
|
1.11
|
62
|
pSM19035-encoded zeta toxin induces stasis followed by death in a subpopulation of cells.
|
Microbiology
|
2006
|
1.10
|
63
|
The phosphoproteome of the minimal bacterium Mycoplasma pneumoniae: analysis of the complete known Ser/Thr kinome suggests the existence of novel kinases.
|
Mol Cell Proteomics
|
2010
|
1.09
|
64
|
Global impact of protein arginine phosphorylation on the physiology of Bacillus subtilis.
|
Proc Natl Acad Sci U S A
|
2012
|
1.09
|
65
|
Regulation of quinone detoxification by the thiol stress sensing DUF24/MarR-like repressor, YodB in Bacillus subtilis.
|
Mol Microbiol
|
2008
|
1.09
|
66
|
Human immune proteome in experimental colonization with Staphylococcus aureus.
|
Clin Vaccine Immunol
|
2009
|
1.09
|
67
|
A defect in menadione biosynthesis induces global changes in gene expression in Staphylococcus aureus.
|
J Bacteriol
|
2008
|
1.07
|
68
|
Proteomic analysis of the oxidative stress response in Candida albicans.
|
Proteomics
|
2007
|
1.07
|
69
|
Profiling the surfacome of Staphylococcus aureus.
|
Proteomics
|
2010
|
1.07
|
70
|
Trapping and proteomic identification of cellular substrates of the ClpP protease in Staphylococcus aureus.
|
J Proteome Res
|
2013
|
1.06
|
71
|
CtsR, the Gram-positive master regulator of protein quality control, feels the heat.
|
EMBO J
|
2010
|
1.06
|
72
|
Staphylococcus aureus ClpC ATPase is a late growth phase effector of metabolism and persistence.
|
Proteomics
|
2009
|
1.05
|
73
|
Characterization of the oxygen-responsive NreABC regulon of Staphylococcus aureus.
|
J Bacteriol
|
2008
|
1.05
|
74
|
Towards the development of Bacillus subtilis as a cell factory for membrane proteins and protein complexes.
|
Microb Cell Fact
|
2008
|
1.05
|
75
|
The proteome and transcriptome analysis of Bacillus subtilis in response to salicylic acid.
|
Proteomics
|
2007
|
1.05
|
76
|
Oxidative stress triggers thiol oxidation in the glyceraldehyde-3-phosphate dehydrogenase of Staphylococcus aureus.
|
Mol Microbiol
|
2004
|
1.04
|
77
|
The extracellular and cytoplasmic proteomes of the non-virulent Bacillus anthracis strain UM23C1-2.
|
Proteomics
|
2005
|
1.04
|
78
|
Functional analysis of novel Rab GTPases identified in the proteome of purified Legionella-containing vacuoles from macrophages.
|
Cell Microbiol
|
2014
|
1.04
|
79
|
Global analysis of the Staphylococcus aureus response to mupirocin.
|
Antimicrob Agents Chemother
|
2011
|
1.04
|
80
|
MicroRNAs in multiple sclerosis and experimental autoimmune encephalomyelitis.
|
Autoimmun Rev
|
2011
|
1.03
|
81
|
Comprehensive absolute quantification of the cytosolic proteome of Bacillus subtilis by data independent, parallel fragmentation in liquid chromatography/mass spectrometry (LC/MS(E)).
|
Mol Cell Proteomics
|
2014
|
1.03
|
82
|
The ClpP peptidase is the major determinant of bulk protein turnover in Bacillus subtilis.
|
J Bacteriol
|
2004
|
1.03
|
83
|
Involvement of Bacillus subtilis ClpE in CtsR degradation and protein quality control.
|
J Bacteriol
|
2006
|
1.02
|
84
|
A proteomic and transcriptional view of acidogenic and solventogenic steady-state cells of Clostridium acetobutylicum in a chemostat culture.
|
Appl Microbiol Biotechnol
|
2010
|
1.02
|
85
|
Proteomic signatures uncover thiol-specific electrophile resistance mechanisms in Bacillus subtilis.
|
Expert Rev Proteomics
|
2008
|
1.02
|
86
|
Efficient, global-scale quantification of absolute protein amounts by integration of targeted mass spectrometry and two-dimensional gel-based proteomics.
|
Anal Chem
|
2011
|
1.01
|
87
|
Depletion of thiol-containing proteins in response to quinones in Bacillus subtilis.
|
Mol Microbiol
|
2008
|
1.01
|
88
|
Proteome signatures for stress and starvation in Bacillus subtilis as revealed by a 2-D gel image color coding approach.
|
Proteomics
|
2006
|
1.01
|
89
|
Differential gene expression in response to phenol and catechol reveals different metabolic activities for the degradation of aromatic compounds in Bacillus subtilis.
|
Environ Microbiol
|
2006
|
1.00
|
90
|
The alternative sigma factor sigma B of Staphylococcus aureus modulates virulence in experimental central venous catheter-related infections.
|
Microbes Infect
|
2007
|
1.00
|
91
|
Using standard positions and image fusion to create proteome maps from collections of two-dimensional gel electrophoresis images.
|
Proteomics
|
2003
|
1.00
|
92
|
Physiological homogeneity among the endosymbionts of Riftia pachyptila and Tevnia jerichonana revealed by proteogenomics.
|
ISME J
|
2011
|
0.99
|
93
|
A metabolomics and proteomics study of the adaptation of Staphylococcus aureus to glucose starvation.
|
Mol Biosyst
|
2011
|
0.99
|
94
|
Transcription in Mycoplasma pneumoniae: analysis of the promoters of the ackA and ldh genes.
|
J Mol Biol
|
2007
|
0.99
|
95
|
Daptomycin versus Friulimicin B: in-depth profiling of Bacillus subtilis cell envelope stress responses.
|
Antimicrob Agents Chemother
|
2009
|
0.98
|
96
|
The dynamic protein partnership of RNA polymerase in Bacillus subtilis.
|
Proteomics
|
2011
|
0.98
|
97
|
Genes involved in SkfA killing factor production protect a Bacillus subtilis lipase against proteolysis.
|
Appl Environ Microbiol
|
2005
|
0.98
|
98
|
Complementary analysis of the vegetative membrane proteome of the human pathogen Staphylococcus aureus.
|
Mol Cell Proteomics
|
2008
|
0.98
|
99
|
Defining the structure of the general stress regulon of Bacillus subtilis using targeted microarray analysis and random forest classification.
|
Microbiology
|
2011
|
0.98
|
100
|
Distinctive patterns in the human antibody response to Staphylococcus aureus bacteremia in carriers and non-carriers.
|
Proteomics
|
2011
|
0.97
|
101
|
Towards the entire proteome of the model bacterium Bacillus subtilis by gel-based and gel-free approaches.
|
J Chromatogr B Analyt Technol Biomed Life Sci
|
2006
|
0.97
|
102
|
Cohort profile: Greifswald approach to individualized medicine (GANI_MED).
|
J Transl Med
|
2014
|
0.97
|
103
|
The role of peptide deformylase in protein biosynthesis: a proteomic study.
|
Proteomics
|
2003
|
0.97
|
104
|
Functional genomic analysis of the Bacillus subtilis Tat pathway for protein secretion.
|
J Biotechnol
|
2002
|
0.97
|
105
|
Integration of MicroRNA databases to study MicroRNAs associated with multiple sclerosis.
|
Mol Neurobiol
|
2012
|
0.97
|
106
|
Proteomic dissection of potential signal recognition particle dependence in protein secretion by Bacillus subtilis.
|
Proteomics
|
2006
|
0.96
|
107
|
Synthetic effects of secG and secY2 mutations on exoproteome biogenesis in Staphylococcus aureus.
|
J Bacteriol
|
2010
|
0.96
|
108
|
Changing the phospholipid composition of Staphylococcus aureus causes distinct changes in membrane proteome and membrane-sensory regulators.
|
Proteomics
|
2010
|
0.96
|
109
|
Chemical characterization of soil extract as growth media for the ecophysiological study of bacteria.
|
Appl Microbiol Biotechnol
|
2009
|
0.96
|
110
|
Monitoring of changes in the membrane proteome during stationary phase adaptation of Bacillus subtilis using in vivo labeling techniques.
|
Proteomics
|
2008
|
0.96
|
111
|
CtsR inactivation during thiol-specific stress in low GC, Gram+ bacteria.
|
Mol Microbiol
|
2011
|
0.96
|
112
|
The stability of cytadherence proteins in Mycoplasma pneumoniae requires activity of the protein kinase PrkC.
|
Infect Immun
|
2009
|
0.96
|
113
|
Immunoproteomic analysis of Bordetella pertussis and identification of new immunogenic proteins.
|
Vaccine
|
2008
|
0.96
|
114
|
The Spx paralogue MgsR (YqgZ) controls a subregulon within the general stress response of Bacillus subtilis.
|
Mol Microbiol
|
2008
|
0.96
|
115
|
A proteomic view of the facultatively chemolithoautotrophic lifestyle of Ralstonia eutropha H16.
|
Proteomics
|
2009
|
0.95
|
116
|
Probing the active site of homoserine trans-succinylase.
|
FEBS Lett
|
2004
|
0.95
|
117
|
Gel-free and gel-based proteomics in Bacillus subtilis: a comparative study.
|
Mol Cell Proteomics
|
2006
|
0.95
|
118
|
ClpXP protease regulates the signal peptide cleavage of secretory preproteins in Bacillus subtilis with a mechanism distinct from that of the Ecs ABC transporter.
|
J Bacteriol
|
2002
|
0.95
|
119
|
Response of methicillin-resistant Staphylococcus aureus to amicoumacin A.
|
PLoS One
|
2012
|
0.95
|
120
|
Stabilization of cell wall proteins in Bacillus subtilis: a proteomic approach.
|
Proteomics
|
2002
|
0.94
|
121
|
Proteolysis during long-term glucose starvation in Staphylococcus aureus COL.
|
Proteomics
|
2009
|
0.94
|
122
|
The phosphorus source phytate changes the composition of the cell wall proteome in Bacillus subtilis.
|
J Proteome Res
|
2007
|
0.94
|
123
|
Two-dimensional reference map of Agrobacterium tumefaciens proteins.
|
Proteomics
|
2004
|
0.94
|
124
|
Structural and functional characterization of partner switching regulating the environmental stress response in Bacillus subtilis.
|
J Biol Chem
|
2007
|
0.94
|
125
|
Bacillus subtilis tolerance of moderate concentrations of rifampin involves the sigma(B)-dependent general and multiple stress response.
|
J Bacteriol
|
2002
|
0.94
|
126
|
From complementarity to comprehensiveness--targeting the membrane proteome of growing Bacillus subtilis by divergent approaches.
|
Proteomics
|
2008
|
0.93
|
127
|
The twin arginine protein transport pathway exports multiple virulence proteins in the plant pathogen Streptomyces scabies.
|
Mol Microbiol
|
2010
|
0.93
|
128
|
A proteomic view of Candida albicans yeast cell metabolism in exponential and stationary growth phases.
|
Int J Med Microbiol
|
2007
|
0.93
|
129
|
In vitro phosphorylation of key metabolic enzymes from Bacillus subtilis: PrkC phosphorylates enzymes from different branches of basic metabolism.
|
J Mol Microbiol Biotechnol
|
2010
|
0.93
|
130
|
Post-transcriptional regulation of the Bacillus subtilis pst operon encoding a phosphate-specific ABC transporter.
|
Microbiology
|
2004
|
0.93
|
131
|
Effects of Staphylococcus aureus-hemolysin A on calcium signalling in immortalized human airway epithelial cells.
|
Cell Calcium
|
2008
|
0.92
|
132
|
A disulfide bond-containing alkaline phosphatase triggers a BdbC-dependent secretion stress response in Bacillus subtilis.
|
Appl Environ Microbiol
|
2006
|
0.92
|
133
|
An acetoin-regulated expression system of Bacillus subtilis.
|
Appl Microbiol Biotechnol
|
2006
|
0.92
|
134
|
Bacillus subtilis mutant LicT antiterminators exhibiting enzyme I- and HPr-independent antitermination affect catabolite repression of the bglPH operon.
|
J Bacteriol
|
2002
|
0.92
|
135
|
Sieving treatment biomarkers from blood gene-expression profiles: a pharmacogenomic update on two types of multiple sclerosis therapy.
|
Pharmacogenomics
|
2011
|
0.92
|
136
|
FlhF, the third signal recognition particle-GTPase of Bacillus subtilis, is dispensable for protein secretion.
|
J Bacteriol
|
2004
|
0.92
|
137
|
The redox-sensing regulator YodB senses quinones and diamide via a thiol-disulfide switch in Bacillus subtilis.
|
Proteomics
|
2010
|
0.92
|
138
|
Role of RsbU in controlling SigB activity in Staphylococcus aureus following alkaline stress.
|
J Bacteriol
|
2009
|
0.91
|
139
|
Contributions of individual σB-dependent general stress genes to oxidative stress resistance of Bacillus subtilis.
|
J Bacteriol
|
2012
|
0.91
|
140
|
Immune cell activation by enterotoxin gene cluster (egc)-encoded and non-egc superantigens from Staphylococcus aureus.
|
J Immunol
|
2008
|
0.91
|
141
|
Characterization of the global impact of low temperature gas plasma on vegetative microorganisms.
|
Proteomics
|
2011
|
0.91
|
142
|
The MarR-type repressor MhqR (YkvE) regulates multiple dioxygenases/glyoxalases and an azoreductase which confer resistance to 2-methylhydroquinone and catechol in Bacillus subtilis.
|
Mol Microbiol
|
2007
|
0.91
|
143
|
Proteomic profiling of cellular stresses in Bacillus subtilis reveals cellular networks and assists in elucidating antibiotic mechanisms of action.
|
Prog Drug Res
|
2007
|
0.91
|
144
|
Quantitative cell surface proteome profiling for SigB-dependent protein expression in the human pathogen Staphylococcus aureus via biotinylation approach.
|
J Proteome Res
|
2010
|
0.91
|
145
|
Phanerochaete chrysosporium soluble proteome as a prelude for the analysis of heavy metal stress response.
|
Proteomics
|
2007
|
0.90
|
146
|
Heat shock proteome of Agrobacterium tumefaciens: evidence for new control systems.
|
J Bacteriol
|
2002
|
0.90
|
147
|
The density of negative charge in the cell wall influences two-component signal transduction in Bacillus subtilis.
|
Microbiology
|
2007
|
0.90
|
148
|
Quality control of inclusion bodies in Escherichia coli.
|
Microb Cell Fact
|
2010
|
0.90
|
149
|
The role of thioredoxin TrxA in Bacillus subtilis: a proteomics and transcriptomics approach.
|
Proteomics
|
2008
|
0.90
|
150
|
A proteome map of murine heart and skeletal muscle.
|
Proteomics
|
2008
|
0.90
|
151
|
Impact of the accessory gene regulatory system (Agr) on extracellular proteins, codY expression and amino acid metabolism in Staphylococcus epidermidis.
|
Proteomics
|
2006
|
0.90
|
152
|
Binding of sigma(A) and sigma(B) to core RNA polymerase after environmental stress in Bacillus subtilis.
|
J Bacteriol
|
2003
|
0.90
|
153
|
In vivo phosphorylation patterns of key stressosome proteins define a second feedback loop that limits activation of Bacillus subtilis σB.
|
Mol Microbiol
|
2011
|
0.90
|
154
|
Bacillus subtilis YqjG is required for genetic competence development.
|
Proteomics
|
2010
|
0.90
|
155
|
"Gently rough": the vaccine potential of a Salmonella enterica regulatory lipopolysaccharide mutant.
|
J Infect Dis
|
2008
|
0.89
|
156
|
Transcriptome and proteome analyses in response to 2-methylhydroquinone and 6-brom-2-vinyl-chroman-4-on reveal different degradation systems involved in the catabolism of aromatic compounds in Bacillus subtilis.
|
Proteomics
|
2007
|
0.89
|
157
|
Detailed proteome analysis of growing cells of the planctomycete Rhodopirellula baltica SH1T.
|
Proteomics
|
2008
|
0.89
|
158
|
An exclusion list based label-free proteome quantification approach using an LTQ Orbitrap.
|
Rapid Commun Mass Spectrom
|
2012
|
0.89
|
159
|
Proteome analysis of plant-induced proteins of Agrobacterium tumefaciens.
|
FEMS Microbiol Ecol
|
2003
|
0.89
|
160
|
Quantitative proteomic view on secreted, cell surface-associated, and cytoplasmic proteins of the methicillin-resistant human pathogen Staphylococcus aureus under iron-limited conditions.
|
J Proteome Res
|
2011
|
0.88
|
161
|
Ralstonia eutropha H16 flagellation changes according to nutrient supply and state of poly(3-hydroxybutyrate) accumulation.
|
Appl Environ Microbiol
|
2008
|
0.88
|
162
|
The phosphate-starvation response of Bacillus licheniformis.
|
Proteomics
|
2006
|
0.88
|
163
|
Proteomic analysis of the bacterial pathogen Bartonella henselae and identification of immunogenic proteins for serodiagnosis.
|
Proteomics
|
2009
|
0.88
|
164
|
The peroxide stress response of Bacillus licheniformis.
|
Proteomics
|
2011
|
0.88
|
165
|
Monitoring of multiple sclerosis immunotherapy: from single candidates to biomarker networks.
|
J Neurol
|
2008
|
0.88
|
166
|
The role of thiol oxidative stress response in heat-induced protein aggregate formation during thermotolerance in Bacillus subtilis.
|
Mol Microbiol
|
2014
|
0.88
|
167
|
Environmental salinity determines the specificity and need for Tat-dependent secretion of the YwbN protein in Bacillus subtilis.
|
PLoS One
|
2011
|
0.88
|
168
|
Proteomic survey through secretome of Bacillus subtilis.
|
Methods Biochem Anal
|
2006
|
0.87
|
169
|
The paralogous MarR/DUF24-family repressors YodB and CatR control expression of the catechol dioxygenase CatE in Bacillus subtilis.
|
J Bacteriol
|
2010
|
0.87
|
170
|
From genomics via proteomics to cellular physiology of the Gram-positive model organism Bacillus subtilis.
|
Cell Microbiol
|
2005
|
0.87
|
171
|
Status quo in physiological proteomics of the uncultured Riftia pachyptila endosymbiont.
|
Proteomics
|
2011
|
0.87
|
172
|
Regulation of acetoin and 2,3-butanediol utilization in Bacillus licheniformis.
|
Appl Microbiol Biotechnol
|
2010
|
0.87
|
173
|
Proteomic and transcriptomic elucidation of the mutant ralstonia eutropha G+1 with regard to glucose utilization.
|
Appl Environ Microbiol
|
2011
|
0.87
|
174
|
A comprehensive analysis of Bordetella pertussis surface proteome and identification of new immunogenic proteins.
|
Vaccine
|
2011
|
0.87
|
175
|
Differential effect of YidC depletion on the membrane proteome of Escherichia coli under aerobic and anaerobic growth conditions.
|
Proteomics
|
2010
|
0.87
|
176
|
A proteomic view of cell physiology of Bacillus licheniformis.
|
Proteomics
|
2004
|
0.87
|
177
|
Epitope predictions indicate the presence of two distinct types of epitope-antibody-reactivities determined by epitope profiling of intravenous immunoglobulins.
|
PLoS One
|
2013
|
0.87
|
178
|
Regulation of CtsR activity in low GC, Gram+ bacteria.
|
Adv Microb Physiol
|
2010
|
0.86
|
179
|
The glucose and nitrogen starvation response of Bacillus licheniformis.
|
Proteomics
|
2007
|
0.86
|
180
|
Genetic or chemical protease inhibition causes significant changes in the Bacillus subtilis exoproteome.
|
Proteomics
|
2008
|
0.86
|
181
|
Long-term genome-wide blood RNA expression profiles yield novel molecular response candidates for IFN-beta-1b treatment in relapsing remitting MS.
|
Pharmacogenomics
|
2010
|
0.86
|
182
|
Mapping of interactions between human macrophages and Staphylococcus aureus reveals an involvement of MAP kinase signaling in the host defense.
|
J Proteome Res
|
2011
|
0.86
|
183
|
Global expression profiling of Bacillus subtilis cells during industrial-close fed-batch fermentations with different nitrogen sources.
|
Biotechnol Bioeng
|
2005
|
0.86
|
184
|
Global gene expression profiling of Bacillus subtilis in response to ammonium and tryptophan starvation as revealed by transcriptome and proteome analysis.
|
J Mol Microbiol Biotechnol
|
2007
|
0.86
|
185
|
Frequencies of polymorphisms in cytokines, neurotransmitters and adrenergic receptors in patients with complex regional pain syndrome type I after distal radial fracture.
|
Clin J Pain
|
2010
|
0.85
|
186
|
Cell physiology and protein secretion of Bacillus licheniformis compared to Bacillus subtilis.
|
J Mol Microbiol Biotechnol
|
2008
|
0.85
|
187
|
Staphylococcus aureus physiological growth limitations: insights from flux calculations built on proteomics and external metabolite data.
|
Proteomics
|
2011
|
0.85
|
188
|
Adaptation of Bacillus subtilis carbon core metabolism to simultaneous nutrient limitation and osmotic challenge: a multi-omics perspective.
|
Environ Microbiol
|
2014
|
0.84
|
189
|
Towards a proteome signature for invasive ductal breast carcinoma derived from label-free nanoscale LC-MS protein expression profiling of tumorous and glandular tissue.
|
Anal Bioanal Chem
|
2009
|
0.84
|
190
|
Global relative and absolute quantitation in microbial proteomics.
|
Curr Opin Microbiol
|
2012
|
0.84
|
191
|
Highly phosphorylated bacterial proteins.
|
Proteomics
|
2004
|
0.84
|
192
|
Understanding the physiology and adaptation of staphylococci: a post-genomic approach.
|
Int J Med Microbiol
|
2007
|
0.84
|
193
|
Aureolib - a proteome signature library: towards an understanding of staphylococcus aureus pathophysiology.
|
PLoS One
|
2013
|
0.83
|
194
|
Complete Genome Sequence of Staphylococcus aureus 6850, a Highly Cytotoxic and Clinically Virulent Methicillin-Sensitive Strain with Distant Relatedness to Prototype Strains.
|
Genome Announc
|
2013
|
0.83
|
195
|
Picking vanished proteins from the void: how to collect and ship/share extremely dilute proteins in a reproducible and highly efficient manner.
|
Anal Chem
|
2014
|
0.83
|
196
|
Distribution and infection-related functions of bacillithiol in Staphylococcus aureus.
|
Int J Med Microbiol
|
2013
|
0.82
|
197
|
Monitoring of stress responses.
|
Adv Biochem Eng Biotechnol
|
2004
|
0.82
|
198
|
Integration of σB activity into the decision-making process of sporulation initiation in Bacillus subtilis.
|
J Bacteriol
|
2011
|
0.82
|
199
|
Versatile metabolic adaptations of Ralstonia eutropha H16 to a loss of PdhL, the E3 component of the pyruvate dehydrogenase complex.
|
Appl Environ Microbiol
|
2011
|
0.82
|
200
|
Cross-talk between the general stress response and sporulation initiation in Bacillus subtilis - the σ(B) promoter of spo0E represents an AND-gate.
|
Environ Microbiol
|
2012
|
0.82
|
201
|
Life and death of proteins: a case study of glucose-starved Staphylococcus aureus.
|
Mol Cell Proteomics
|
2012
|
0.81
|
202
|
Novel twin-arginine translocation pathway-dependent phenotypes of Bacillus subtilis unveiled by quantitative proteomics.
|
J Proteome Res
|
2013
|
0.81
|
203
|
The influence of SaeRS and σ(B) on the expression of superantigens in different Staphylococcus aureus isolates.
|
Int J Med Microbiol
|
2011
|
0.81
|
204
|
Surface shaving as a versatile tool to profile global interactions between human serum proteins and the Staphylococcus aureus cell surface.
|
Proteomics
|
2011
|
0.81
|
205
|
Two-dimensional proteome reference map for the radiation-resistant bacterium Deinococcus geothermalis.
|
Proteomics
|
2010
|
0.81
|
206
|
Overflow of a hyper-produced secretory protein from the Bacillus Sec pathway into the Tat pathway for protein secretion as revealed by proteogenomics.
|
Proteomics
|
2009
|
0.80
|
207
|
Proteomics of marine bacteria.
|
Electrophoresis
|
2008
|
0.80
|
208
|
Proteomic profiles and kinetics of development of bacteriophage T4 and its rI and rIII mutants in slowly growing Escherichia coli.
|
J Gen Virol
|
2012
|
0.80
|
209
|
Multiple sclerosis: modulation of toll-like receptor (TLR) expression by interferon-β includes upregulation of TLR7 in plasmacytoid dendritic cells.
|
PLoS One
|
2013
|
0.80
|
210
|
Cytoplasmic and periplasmic proteomic signatures of exponentially growing cells of the psychrophilic bacterium Pseudoalteromonas haloplanktis TAC125.
|
Appl Environ Microbiol
|
2010
|
0.80
|
211
|
Characterization of proteome alterations in Phanerochaete chrysosporium in response to lead exposure.
|
Proteome Sci
|
2011
|
0.80
|
212
|
Analyses of soluble and membrane proteomes of Ralstonia eutropha H16 reveal major changes in the protein complement in adaptation to lithoautotrophy.
|
J Proteome Res
|
2011
|
0.80
|
213
|
Common versus noble Bacillus subtilis differentially responds to air and argon gas plasma.
|
Proteomics
|
2013
|
0.79
|
214
|
MscL of Bacillus subtilis prevents selective release of cytoplasmic proteins in a hypotonic environment.
|
Proteomics
|
2009
|
0.79
|
215
|
Proteomic analysis of Bacillus cereus growing in liquid soil organic matter.
|
FEMS Microbiol Lett
|
2007
|
0.79
|
216
|
An inventory of short term and long term changes in gene expression under interferon β treatment of relapsing remitting MS patients.
|
Curr Pharm Des
|
2012
|
0.79
|
217
|
Cell surface proteome of the marine planctomycete Rhodopirellula baltica.
|
Proteomics
|
2012
|
0.79
|
218
|
The modulator of the general stress response, MgsR, of Bacillus subtilis is subject to multiple and complex control mechanisms.
|
Environ Microbiol
|
2012
|
0.79
|
219
|
Proteomic analysis to investigate regulatory networks in Staphylococcus aureus.
|
Methods Mol Biol
|
2008
|
0.79
|
220
|
From the genome sequence to the protein inventory of Bacillus subtilis.
|
Proteomics
|
2011
|
0.79
|
221
|
Fermentation stage-dependent adaptations of Bacillus licheniformis during enzyme production.
|
Microb Cell Fact
|
2013
|
0.78
|
222
|
Proteomic analysis of the extremely thermoacidophilic archaeon Picrophilus torridus at pH and temperature values close to its growth limit.
|
Proteomics
|
2011
|
0.78
|
223
|
Elevated poly(3-hydroxybutyrate) synthesis in mutants of Ralstonia eutropha H16 defective in lipopolysaccharide biosynthesis.
|
Appl Microbiol Biotechnol
|
2012
|
0.78
|
224
|
Mercaptosuccinate metabolism in Variovorax paradoxus strain B4--a proteomic approach.
|
Appl Microbiol Biotechnol
|
2014
|
0.78
|
225
|
Influence of impaired lipoprotein biogenesis on surface and exoproteome of Streptococcus pneumoniae.
|
J Proteome Res
|
2014
|
0.78
|
226
|
Improved sandwich-hybridization assay for an electrical DNA-chip-based monitoring of bioprocess-relevant marker genes.
|
Appl Microbiol Biotechnol
|
2008
|
0.78
|
227
|
Functional analysis of the sortase YhcS in Bacillus subtilis.
|
Proteomics
|
2011
|
0.78
|
228
|
Mass spectrometric characterization of protein structure details refines the proteome signature for invasive ductal breast carcinoma.
|
J Am Soc Mass Spectrom
|
2011
|
0.77
|
229
|
Initial adhesion of Listeria monocytogenes to fine polished stainless steel under flow conditions is determined by prior growth conditions.
|
Int J Food Microbiol
|
2013
|
0.77
|
230
|
Secretome analysis revealed adaptive and non-adaptive responses of the Staphylococcus carnosus femB mutant.
|
Proteomics
|
2015
|
0.77
|
231
|
Global relative quantification with liquid chromatography-matrix-assisted laser desorption ionization time-of-flight (LC-MALDI-TOF)--cross-validation with LTQ-Orbitrap proves reliability and reveals complementary ionization preferences.
|
Mol Cell Proteomics
|
2013
|
0.77
|
232
|
Deletion of membrane-associated Asp23 leads to upregulation of cell wall stress genes in Staphylococcus aureus.
|
Mol Microbiol
|
2014
|
0.77
|
233
|
Protecs, a comprehensive and powerful storage and analysis system for OMICS data, applied for profiling the anaerobiosis response of Staphylococcus aureus COL.
|
Proteomics
|
2010
|
0.77
|
234
|
Partially overlapping substrate specificities of staphylococcal group A sortases.
|
Proteomics
|
2012
|
0.77
|
235
|
Differential 2-D protein gel electrophoresis analysis of Legionella pneumophila wild type and Tat secretion mutants.
|
Int J Med Microbiol
|
2007
|
0.77
|
236
|
Global proteome analysis of vancomycin stress in Staphylococcus aureus.
|
Int J Med Microbiol
|
2013
|
0.77
|
237
|
Application of an electric DNA-chip for the expression analysis of bioprocess-relevant marker genes of Bacillus subtilis.
|
Biotechnol Bioeng
|
2005
|
0.76
|
238
|
Influence of the leuX-encoded tRNA5(Leu) on the regulation of gene expression in pathogenic Escherichia coli.
|
J Mol Microbiol Biotechnol
|
2002
|
0.76
|
239
|
Imaging and strain analysis of nano-scale SiGe structures by tip-enhanced Raman spectroscopy.
|
Ultramicroscopy
|
2011
|
0.76
|
240
|
Electrical protein array chips for the detection of staphylococcal virulence factors.
|
Appl Microbiol Biotechnol
|
2009
|
0.76
|
241
|
Quantitative proteome profiling during the fermentation process of pleiotropic Bacillus subtilis mutants.
|
Proteomics
|
2004
|
0.76
|
242
|
Corynebacterium glutamicum as an indicator for environmental cobalt and silver stress--a proteome analysis.
|
J Environ Sci Health B
|
2010
|
0.76
|
243
|
Direct mass spectrometric identification of ABCB1 (P-glycoprotein/MDR1) from the apical membrane fraction of human placenta using fourier transform ion cyclotron mass spectrometry.
|
Pharmacogenet Genomics
|
2006
|
0.76
|
244
|
The response of Bacillus licheniformis to heat and ethanol stress and the role of the SigB regulon.
|
Proteomics
|
2013
|
0.76
|
245
|
A time resolved metabolomics study: the influence of different carbon sources during growth and starvation of Bacillus subtilis.
|
Mol Biosyst
|
2014
|
0.75
|
246
|
The new horizon in 2D electrophoresis: new technology to increase resolution and sensitivity.
|
Electrophoresis
|
2013
|
0.75
|
247
|
Coping with anoxia: a comprehensive proteomic and transcriptomic survey of denitrification.
|
J Proteome Res
|
2014
|
0.75
|
248
|
Analysis of ultra acidic proteins by the use of anodic acidic gels.
|
Anal Biochem
|
2008
|
0.75
|
249
|
Impact of the core components of the phosphoenolpyruvate-carbohydrate phosphotransferase system, HPr and EI, on differential protein expression in Ralstonia eutropha H16.
|
J Proteome Res
|
2012
|
0.75
|
250
|
Microbial proteomics.
|
Proteomics
|
2011
|
0.75
|
251
|
Functional analysis of the response regulator DegU in Bacillus megaterium DSM319 and comparative secretome analysis of degSU mutants.
|
Appl Microbiol Biotechnol
|
2011
|
0.75
|
252
|
Pathophysiology of staphylococci in the post-genomic era.
|
Int J Med Microbiol
|
2010
|
0.75
|
253
|
Pathoproteomics of pathogenic microorganisms.
|
Proteomics Clin Appl
|
2016
|
0.75
|