Published in Mol Cell Proteomics on November 28, 2011
Microbial Surface Colonization and Biofilm Development in Marine Environments. Microbiol Mol Biol Rev (2015) 1.14
High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade. BMC Genomics (2012) 0.98
Proteogenomics of Gammarus fossarum to document the reproductive system of amphipods. Mol Cell Proteomics (2014) 0.88
Exploring the functional soil-microbe interface and exoenzymes through soil metaexoproteomics. ISME J (2014) 0.85
Functional distinctness in the exoproteomes of marine Synechococcus. Environ Microbiol (2015) 0.82
Time dynamics of the Bacillus cereus exoproteome are shaped by cellular oxidation. Front Microbiol (2015) 0.82
"You produce while I clean up", a strategy revealed by exoproteomics during Synechococcus-Roseobacter interactions. Proteomics (2015) 0.81
The Anabaena sp. PCC 7120 Exoproteome: Taking a Peek outside the Box. Life (Basel) (2015) 0.80
Abundant toxin-related genes in the genomes of beneficial symbionts from deep-sea hydrothermal vent mussels. Elife (2015) 0.79
Comparative genomic, proteomic and exoproteomic analyses of three Pseudomonas strains reveals novel insights into the phosphorus scavenging capabilities of soil bacteria. Environ Microbiol (2016) 0.78
Assessing the exoproteome of marine bacteria, lesson from a RTX-toxin abundantly secreted by Phaeobacter strain DSM 17395. PLoS One (2014) 0.78
Developing Techniques for the Utilization of Planctomycetes As Producers of Bioactive Molecules. Front Microbiol (2016) 0.77
N-Terminal-oriented proteogenomics of the marine bacterium roseobacter denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) labeling and diagonal chromatography. Mol Cell Proteomics (2014) 0.77
Understanding butanol tolerance and assimilation in Pseudomonas putida BIRD-1: an integrated omics approach. Microb Biotechnol (2016) 0.76
Open source approaches to establishing Roseobacter clade bacteria as synthetic biology chassis for biogeoengineering. PeerJ (2016) 0.75
GAPP: A Proteogenomic Software for Genome Annotation and Global Profiling of Post-translational Modifications in Prokaryotes. Mol Cell Proteomics (2016) 0.75
Ovary and embryo proteogenomic dataset revealing diversity of vitellogenins in the crustacean Gammarus fossarum. Data Brief (2016) 0.75
The Exposed Proteomes of Brachyspira hyodysenteriae and B. pilosicoli. Front Microbiol (2016) 0.75
Untangling Genomes of Novel Planctomycetal and Verrucomicrobial Species from Monterey Bay Kelp Forest Metagenomes by Refined Binning. Front Microbiol (2017) 0.75
The extracellular proteome of two Bifidobacterium species reveals different adaptation strategies to low iron conditions. BMC Genomics (2017) 0.75
Exoproteome Analysis of the Seaweed Pathogen Nautella italica R11 Reveals Temperature-Dependent Regulation of RTX-Like Proteins. Front Microbiol (2017) 0.75
Perturbed human sub-networks by Fusobacterium nucleatum candidate virulence proteins. Microbiome (2017) 0.75
Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc (2007) 19.50
A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal Chem (2004) 19.20
Prediction of lipoprotein signal peptides in Gram-negative bacteria. Protein Sci (2003) 6.85
Microbial structuring of marine ecosystems. Nat Rev Microbiol (2007) 4.64
The Proteomics Identifications database: 2010 update. Nucleic Acids Res (2009) 4.47
The genomic basis of trophic strategy in marine bacteria. Proc Natl Acad Sci U S A (2009) 3.72
Non-classical protein secretion in bacteria. BMC Microbiol (2005) 3.17
Genome characteristics of a generalist marine bacterial lineage. ISME J (2010) 3.11
Environmental biology of the marine Roseobacter lineage. Annu Rev Microbiol (2006) 3.05
Marine chemical ecology: chemical signals and cues structure marine populations, communities, and ecosystems. Ann Rev Mar Sci (2009) 3.05
Ecological genomics of marine Roseobacters. Appl Environ Microbiol (2007) 2.68
Diversity, ecology, and genomics of the Roseobacter clade: a short overview. Arch Microbiol (2008) 2.45
The interaction between RTX toxins and target cells. Trends Microbiol (1999) 2.27
Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue. Trends Microbiol (2009) 2.14
PatternLab for proteomics: a tool for differential shotgun proteomics. BMC Bioinformatics (2008) 2.13
RTX proteins: a highly diverse family secreted by a common mechanism. FEMS Microbiol Rev (2010) 2.13
The Jekyll-and-Hyde chemistry of Phaeobacter gallaeciensis. Nat Chem (2011) 2.12
The microbial ocean from genomes to biomes. Nature (2009) 1.91
Algicidal bacteria in the sea and their impact on algal blooms. J Eukaryot Microbiol (2004) 1.83
Microbial ecology of ocean biogeochemistry: a community perspective. Science (2008) 1.72
Genetic dissection of tropodithietic acid biosynthesis by marine roseobacters. Appl Environ Microbiol (2008) 1.68
Inteins: structure, function, and evolution. Annu Rev Microbiol (2002) 1.67
A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa. Bioinformatics (2009) 1.59
Immense essence of excellence: marine microbial bioactive compounds. Mar Drugs (2010) 1.57
Protein secretion and membrane insertion systems in gram-negative bacteria. J Membr Biol (2007) 1.51
Antibacterial activity of marine culturable bacteria collected from a global sampling of ocean surface waters and surface swabs of marine organisms. Mar Biotechnol (NY) (2009) 1.50
Production of antibacterial compounds and biofilm formation by Roseobacter species are influenced by culture conditions. Appl Environ Microbiol (2006) 1.50
Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti. PLoS Genet (2009) 1.50
Molecular mechanisms underlying roseobacter-phytoplankton symbioses. Curr Opin Biotechnol (2010) 1.35
Genomic blueprint of Hahella chejuensis, a marine microbe producing an algicidal agent. Nucleic Acids Res (2005) 1.34
Expanding the known repertoire of virulence factors produced by Bacillus cereus through early secretome profiling in three redox conditions. Mol Cell Proteomics (2010) 1.31
High abundance of virulence gene homologues in marine bacteria. Environ Microbiol (2009) 1.27
Proteomics uncovers extreme heterogeneity in the Staphylococcus aureus exoproteome due to genomic plasticity and variant gene regulation. Proteomics (2010) 1.27
Microbial colonization and competition on the marine alga Ulva australis. Appl Environ Microbiol (2006) 1.25
Roseobacticides: small molecule modulators of an algal-bacterial symbiosis. J Am Chem Soc (2011) 1.24
Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons. Mol Cell Proteomics (2009) 1.24
Surface colonization by marine roseobacters: integrating genotype and phenotype. Appl Environ Microbiol (2009) 1.21
Establishing a direct role for the Bartonella bacilliformis invasion-associated locus B (IalB) protein in human erythrocyte parasitism. Infect Immun (2001) 1.16
A perfect genome annotation is within reach with the proteomics and genomics alliance. Curr Opin Microbiol (2009) 1.16
Cultivation and ecosystem role of a marine roseobacter clade-affiliated cluster bacterium. Appl Environ Microbiol (2008) 1.11
Oceanibulbus indolifex gen. nov., sp. nov., a North Sea alphaproteobacterium that produces bioactive metabolites. Int J Syst Evol Microbiol (2004) 1.07
Trophic interactions between viruses, bacteria and nanoflagellates under various nutrient conditions and simulated climate change. Environ Microbiol (2011) 1.04
Proteomic insights into the lifestyle of an environmentally relevant marine bacterium. ISME J (2011) 1.03
Revisiting iodination sites in thyroglobulin with an organ-oriented shotgun strategy. J Biol Chem (2010) 1.00
Short-term changes in the composition of active marine bacterial assemblages in response to diesel oil pollution. Microb Biotechnol (2010) 0.99
In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry: the Ruegeria pomeroyi DSS-3 case-study. Mar Drugs (2010) 0.99
Proteogenomics and systems biology: quest for the ultimate missing parts. Expert Rev Proteomics (2010) 0.99
Identification of natural target proteins indicates functions of a serralysin-type metalloprotease, PrtA, in anti-immune mechanisms. Appl Environ Microbiol (2009) 0.95
Profiling the secretome of the marine bacterium Pseudoalteromonas tunicata using amine-specific isobaric tagging (iTRAQ). J Proteome Res (2007) 0.91
Biology of Pseudomonas stutzeri. Microbiol Mol Biol Rev (2006) 3.18
Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea. Genome Biol (2009) 1.69
Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti. PLoS Genet (2009) 1.50
A role for GPN-loop GTPase yGPN1 in sister chromatid cohesion. Cell Cycle (2011) 1.41
Expanding the known repertoire of virulence factors produced by Bacillus cereus through early secretome profiling in three redox conditions. Mol Cell Proteomics (2010) 1.31
Biosynthesis of wyosine derivatives in tRNA: an ancient and highly diverse pathway in Archaea. Mol Biol Evol (2010) 1.28
Polychlorinated biphenyl-degrading microbial communities in soils and sediments. Curr Opin Microbiol (2002) 1.28
Halophilic archaea in the human intestinal mucosa. Environ Microbiol (2010) 1.25
Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons. Mol Cell Proteomics (2009) 1.24
Gulosibacter molinativorax gen. nov., sp. nov., a molinate-degrading bacterium, and classification of 'Brevibacterium helvolum' DSM 20419 as Pseudoclavibacter helvolus gen. nov., sp. nov. Int J Syst Evol Microbiol (2004) 1.23
Draft genome of Pseudomonas stutzeri strain ZoBell (CCUG 16156), a marine isolate and model organism for denitrification studies. J Bacteriol (2012) 1.23
Complete genome sequence of the naphthalene-degrading bacterium Pseudomonas stutzeri AN10 (CCUG 29243). J Bacteriol (2012) 1.21
Anthropogenic perturbations in marine microbial communities. FEMS Microbiol Rev (2011) 1.13
Genome sequence of Pseudomonas stutzeri strain JM300 (DSM 10701), a soil isolate and model organism for natural transformation. J Bacteriol (2012) 1.08
Restricting fermentative potential by proteome remodeling: an adaptive strategy evidenced in Bacillus cereus. Mol Cell Proteomics (2012) 1.08
Taking the shortcut for high-throughput shotgun proteomic analysis of bacteria. Methods Mol Biol (2014) 1.06
THUMP from archaeal tRNA:m22G10 methyltransferase, a genuine autonomously folding domain. Nucleic Acids Res (2006) 1.04
Proteomic insights into the lifestyle of an environmentally relevant marine bacterium. ISME J (2011) 1.03
Revisiting iodination sites in thyroglobulin with an organ-oriented shotgun strategy. J Biol Chem (2010) 1.00
Pipelines for New Chemicals: a strategy to create new value chains and stimulate innovation-based economic revival in Southern European countries. Environ Microbiol (2014) 1.00
Short-term changes in the composition of active marine bacterial assemblages in response to diesel oil pollution. Microb Biotechnol (2010) 0.99
Polyphasic characterization of Pseudomonas stutzeri CLN100 which simultaneously degrades chloro- and methylaromatics: a new genomovar within the species. Syst Appl Microbiol (2003) 0.99
In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry: the Ruegeria pomeroyi DSS-3 case-study. Mar Drugs (2010) 0.99
N-terminomics and proteogenomics, getting off to a good start. Proteomics (2014) 0.99
High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade. BMC Genomics (2012) 0.98
Structural insights into a new homodimeric self-activated GTPase family. EMBO Rep (2007) 0.97
Draft Genome of Pseudomonas stutzeri Strain NF13, a Nitrogen Fixer Isolated from the Galapagos Rift Hydrothermal Vent. Genome Announc (2013) 0.97
4-Demethylwyosine synthase from Pyrococcus abyssi is a radical-S-adenosyl-L-methionine enzyme with an additional [4Fe-4S](+2) cluster that interacts with the pyruvate co-substrate. J Biol Chem (2012) 0.96
ApoFnr binds as a monomer to promoters regulating the expression of enterotoxin genes of Bacillus cereus. J Bacteriol (2008) 0.96
ResDE-dependent regulation of enterotoxin gene expression in Bacillus cereus: evidence for multiple modes of binding for ResD and interaction with Fnr. J Bacteriol (2009) 0.95
A novel pathway for mineralization of the thiocarbamate herbicide molinate by a defined bacterial mixed culture. Environ Microbiol (2003) 0.94
Structure of a [2Fe-2S] ferredoxin from Rhodobacter capsulatus likely involved in Fe-S cluster biogenesis and conformational changes observed upon reduction. J Biol Inorg Chem (2006) 0.94
Identity elements required for enzymatic formation of N2,N2-dimethylguanosine from N2-monomethylated derivative and its possible role in avoiding alternative conformations in archaeal tRNA. J Mol Biol (2006) 0.94
Draft Genome Sequence of Pseudomonas stutzeri Strain B1SMN1, a Nitrogen-Fixing and Naphthalene-Degrading Strain Isolated from Wastewater. Genome Announc (2013) 0.93
Coexistence of two distinct copies of naphthalene degradation genes in Pseudomonas strains isolated from the western Mediterranean region. Appl Environ Microbiol (2002) 0.92
Pseudomonas diversity in crude-oil-contaminated intertidal sand samples obtained after the Prestige oil spill. Appl Environ Microbiol (2010) 0.92
Bacterial diversity in dry modern freshwater stromatolites from Ruidera Pools Natural Park, Spain. Syst Appl Microbiol (2010) 0.92
Ribosomal proteins as biomarkers for bacterial identification by mass spectrometry in the clinical microbiology laboratory. J Microbiol Methods (2013) 0.90
Shotgun proteomics suggests involvement of additional enzymes in dioxin degradation by Sphingomonas wittichii RW1. Environ Microbiol (2013) 0.90
Assessment of solvent residues accessibility using three Sulfo-NHS-biotin reagents in parallel: application to footprint changes of a methyltransferase upon binding its substrate. J Mass Spectrom (2008) 0.89
The Deinococcus radiodurans DR1245 protein, a DdrB partner homologous to YbjN proteins and reminiscent of type III secretion system chaperones. PLoS One (2013) 0.89
Bacterial diversity, composition and dynamics in and around recreational coastal areas. Environ Microbiol (2007) 0.88
RNA sequencing and proteogenomics reveal the importance of leaderless mRNAs in the radiation-tolerant bacterium Deinococcus deserti. Genome Biol Evol (2014) 0.87
OhrRA functions as a redox-responsive system controlling toxinogenesis in Bacillus cereus. J Proteomics (2013) 0.86
Expression, purification, crystallization and preliminary crystallographic analysis of the PAB0955 gene product. Acta Crystallogr Sect F Struct Biol Cryst Commun (2005) 0.86
Comparative proteomics reveals key proteins recruited at the nucleoid of Deinococcus after irradiation-induced DNA damage. Proteomics (2013) 0.85
ISPst9, an ISL3-like insertion sequence from Pseudomonas stutzeri AN10 involved in catabolic gene inactivation. Int Microbiol (2008) 0.85
Forensic comparison of soils by bacterial community DNA profiling. J Forensic Sci (2002) 0.83
Determination of estrogen presence in water by SPR using estrogen receptor dimerization. Anal Bioanal Chem (2007) 0.83
Next-generation proteomics: toward customized biomarkers for environmental biomonitoring. Environ Sci Technol (2014) 0.83
Analytical constraints for the analysis of human cell line secretomes by shotgun proteomics. J Proteomics (2011) 0.82
Ferredoxin-mediated reactivation of the chlorocatechol 2,3-dioxygenase from Pseudomonas putida GJ31. Arch Microbiol (2002) 0.81
Physiological role of NahW, the additional salicylate hydroxylase found in Pseudomonas stutzeri AN10. FEMS Microbiol Lett (2009) 0.81
Shotgun nanoLC-MS/MS proteogenomics to document MALDI-TOF biomarkers for screening new members of the Ruegeria genus. Environ Microbiol (2012) 0.79
Proteogenomic biomarkers for identification of Francisella species and subspecies by matrix-assisted laser desorption ionization-time-of-flight mass spectrometry. Anal Chem (2014) 0.79
In vitro assessment of cobalt oxide particle toxicity: identifying and circumventing interference. Toxicol In Vitro (2013) 0.79
Nutriproteomics and Proteogenomics: Cultivating Two Novel Hybrid Fields of Personalized Medicine with Added Societal Value. Curr Pharmacogenomics Person Med (2010) 0.78
Evaluation of the ability of erythromycin-resistant and -susceptible pharyngeal group A Streptococcus isolates from Spain to enter and persist in human keratinocytes. J Med Microbiol (2007) 0.78
Treatment of cork boiling wastewater using chemical oxidation and biodegradation. Chemosphere (2006) 0.78
Eukaryotic GPN-loop GTPases paralogs use a dimeric assembly reminiscent of archeal GPN. Cell Cycle (2013) 0.78
Proteogenomic definition of biomarkers for the large Roseobacter clade and application for a quick screening of new environmental isolates. J Proteome Res (2013) 0.78
A comparative proteomic approach to better define Deinococcus nucleoid specificities. J Proteomics (2012) 0.78
Prioritizing targets for structural biology through the lens of proteomics: the archaeal protein TGAM_1934 from Thermococcus gammatolerans. Proteomics (2015) 0.77
Proteomic investigation of male Gammarus fossarum, a freshwater crustacean, in response to endocrine disruptors. J Proteome Res (2014) 0.77
Magnetic immunoaffinity enrichment for selective capture and MS/MS analysis of N-terminal-TMPP-labeled peptides. J Proteome Res (2013) 0.77
N-Terminal-oriented proteogenomics of the marine bacterium roseobacter denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) labeling and diagonal chromatography. Mol Cell Proteomics (2014) 0.77
Major soluble proteome changes in Deinococcus deserti over the earliest stages following gamma-ray irradiation. Proteome Sci (2013) 0.76
Tepidiphilus margaritifer gen. nov., sp. nov., isolated from a thermophilic aerobic digester. Int J Syst Evol Microbiol (2003) 0.75
MiniUIB, a novel minitransposon-based system for stable insertion of foreign DNA into the genomes of Gram-negative and Gram-positive bacteria. Appl Environ Microbiol (2012) 0.75
Subcellular localization and interaction network of the mRNA decay activator Pat1 upon UV stress. Yeast (2013) 0.75
Ecotoxico-proteomics for aquatic environmental monitoring: first in situ application of a new proteomics-based multibiomarker assay using caged amphipods. Environ Sci Technol (2017) 0.75
Multiple phosphorylable sites in the Zaire Ebolavirus nucleoprotein evidenced by high resolution tandem mass spectrometry. J Virol Methods (2012) 0.75
Microbiomes - Embracing complexity. Proteomics (2015) 0.75
Caenibacterium thermophilum gen. nov., sp. nov., isolated from a thermophilic aerobic digester of municipal sludge. Int J Syst Evol Microbiol (2003) 0.75