Published in Environ Microbiol on February 04, 2009
Transposases are the most abundant, most ubiquitous genes in nature. Nucleic Acids Res (2010) 1.91
Type VI secretion: not just for pathogenesis anymore. Cell Host Microbe (2010) 1.88
Regulation of type VI secretion gene clusters by sigma54 and cognate enhancer binding proteins. J Bacteriol (2011) 1.21
Surface colonization by marine roseobacters: integrating genotype and phenotype. Appl Environ Microbiol (2009) 1.21
Comparative genomics suggests an independent origin of cytoplasmic incompatibility in Cardinium hertigii. PLoS Genet (2012) 1.19
Cryptic carbon and sulfur cycling between surface ocean plankton. Proc Natl Acad Sci U S A (2014) 1.17
Marine tubeworm metamorphosis induced by arrays of bacterial phage tail-like structures. Science (2014) 1.15
Microbial Surface Colonization and Biofilm Development in Marine Environments. Microbiol Mol Biol Rev (2015) 1.14
Analysis of membrane proteins in metagenomics: networks of correlated environmental features and protein families. Genome Res (2010) 1.13
Viral ancestors of antiviral systems. Viruses (2011) 1.11
Genomes and virulence factors of novel bacterial pathogens causing bleaching disease in the marine red alga Delisea pulchra. PLoS One (2011) 1.11
Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria. Mol Cell Proteomics (2011) 1.11
Acquired type III secretion system determines environmental fitness of epidemic Vibrio parahaemolyticus in the interaction with bacterivorous protists. PLoS One (2011) 1.05
Evolutionary ecology of the marine Roseobacter clade. Microbiol Mol Biol Rev (2014) 1.04
In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry: the Ruegeria pomeroyi DSS-3 case-study. Mar Drugs (2010) 0.99
Identification of compounds with bioactivity against the nematode Caenorhabditis elegans by a screen based on the functional genomics of the marine bacterium Pseudoalteromonas tunicata D2. Appl Environ Microbiol (2010) 0.97
Metagenome analyses of corroded concrete wastewater pipe biofilms reveal a complex microbial system. BMC Microbiol (2012) 0.96
Deciphering ocean carbon in a changing world. Proc Natl Acad Sci U S A (2016) 0.91
The Pathogen of the Great Barrier Reef Sponge Rhopaloeides odorabile Is a New Strain of Pseudoalteromonas agarivorans Containing Abundant and Diverse Virulence-Related Genes. Mar Biotechnol (NY) (2015) 0.87
Genes similar to the Vibrio parahaemolyticus virulence-related genes tdh, tlh, and vscC2 occur in other vibrionaceae species isolated from a pristine estuary. Appl Environ Microbiol (2013) 0.86
Patterns and architecture of genomic islands in marine bacteria. BMC Genomics (2012) 0.85
A novel protein kinase-like domain in a selenoprotein, widespread in the tree of life. PLoS One (2012) 0.82
The PathoChip, a functional gene array for assessing pathogenic properties of diverse microbial communities. ISME J (2013) 0.81
Ecological Genomics of the Uncultivated Marine Roseobacter Lineage CHAB-I-5. Appl Environ Microbiol (2016) 0.80
Comparative Genomic Analysis Reveals a Diverse Repertoire of Genes Involved in Prokaryote-Eukaryote Interactions within the Pseudovibrio Genus. Front Microbiol (2016) 0.79
Francisella tularensis RipA protein topology and identification of functional domains. J Bacteriol (2012) 0.79
Reduced set of virulence genes allows high accuracy prediction of bacterial pathogenicity in humans. PLoS One (2012) 0.79
Widespread occurrence of bacterial human virulence determinants in soil and freshwater environments. Appl Environ Microbiol (2013) 0.78
Microbial Dysbiosis: Rethinking Disease in Marine Ecosystems. Front Microbiol (2016) 0.78
Invasion ability and disease dynamics of environmentally growing opportunistic pathogens under outside-host competition. PLoS One (2014) 0.77
Diversification of two lineages of symbiotic Photobacterium. PLoS One (2013) 0.76
Bacterial Human Virulence Genes across Diverse Habitats As Assessed by In silico Analysis of Environmental Metagenomes. Front Microbiol (2016) 0.75
Protist-Bacteria Associations: Gammaproteobacteria and Alphaproteobacteria Are Prevalent as Digestion-Resistant Bacteria in Ciliated Protozoa. Front Microbiol (2016) 0.75
Identification and bioactive potential of marine microorganisms from selected Florida coastal areas. Microbiologyopen (2017) 0.75
Basic local alignment search tool. J Mol Biol (1990) 659.07
The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol (2007) 23.58
CD-Search: protein domain annotations on the fly. Nucleic Acids Res (2004) 16.76
Genome streamlining in a cosmopolitan oceanic bacterium. Science (2005) 8.11
Identification of a conserved bacterial protein secretion system in Vibrio cholerae using the Dictyostelium host model system. Proc Natl Acad Sci U S A (2006) 7.99
A virulence locus of Pseudomonas aeruginosa encodes a protein secretion apparatus. Science (2006) 7.84
The type III secretion injectisome. Nat Rev Microbiol (2006) 7.62
Ecological relationships between Vibrio cholerae and planktonic crustacean copepods. Appl Environ Microbiol (1983) 7.52
SAR11 clade dominates ocean surface bacterioplankton communities. Nature (2002) 6.74
Biogenesis, architecture, and function of bacterial type IV secretion systems. Annu Rev Microbiol (2005) 6.16
Type VI secretion system translocates a phage tail spike-like protein into target cells where it cross-links actin. Proc Natl Acad Sci U S A (2007) 5.48
The versatile bacterial type IV secretion systems. Nat Rev Microbiol (2003) 4.98
Type VI secretion: a beginner's guide. Curr Opin Microbiol (2008) 4.18
Pathogenicity islands in bacterial pathogenesis. Clin Microbiol Rev (2004) 3.77
Bacterial pathogenomics. Nature (2007) 3.16
Role of Yersinia murine toxin in survival of Yersinia pestis in the midgut of the flea vector. Science (2002) 3.10
Functional characterization of two type III secretion systems of Vibrio parahaemolyticus. Infect Immun (2004) 2.92
Ecological genomics of marine Roseobacters. Appl Environ Microbiol (2007) 2.68
Genomic characterization of non-O1, non-O139 Vibrio cholerae reveals genes for a type III secretion system. Proc Natl Acad Sci U S A (2005) 2.65
Off the hook--how bacteria survive protozoan grazing. Trends Microbiol (2005) 2.59
Two-partner secretion in Gram-negative bacteria: a thrifty, specific pathway for large virulence proteins. Mol Microbiol (2001) 2.58
Identification of a unique IAHP (IcmF associated homologous proteins) cluster in Vibrio cholerae and other proteobacteria through in silico analysis. In Silico Biol (2003) 2.57
Succession of pelagic marine bacteria during enrichment: a close look at cultivation-induced shifts. Appl Environ Microbiol (2000) 2.44
Pathogenicity islands: a molecular toolbox for bacterial virulence. Cell Microbiol (2006) 2.44
Type III secretion: more systems than you think. Physiology (Bethesda) (2005) 2.26
The bacterial injection kit: type III secretion systems. Ann Med (2005) 2.23
Virulence genes in environmental strains of Vibrio cholerae. Appl Environ Microbiol (2000) 2.21
Molecular characterization of a functional type VI secretion system from a clinical isolate of Aeromonas hydrophila. Microb Pathog (2007) 2.20
The Salmonella enterica subspecies I specific centisome 7 genomic island encodes novel protein families present in bacteria living in close contact with eukaryotic cells. Res Microbiol (2002) 2.18
Algicidal bacteria in the sea and their impact on algal blooms. J Eukaryot Microbiol (2004) 1.83
Differential growth response of colony-forming alpha- and gamma-proteobacteria in dilution culture and nutrient addition experiments from Lake Kinneret (Israel), the eastern Mediterranean Sea, and the Gulf of Eilat. Appl Environ Microbiol (2003) 1.81
Bioinformatics, genomics and evolution of non-flagellar type-III secretion systems: a Darwinian perspective. FEMS Microbiol Rev (2005) 1.72
The crystal structure of filamentous hemagglutinin secretion domain and its implications for the two-partner secretion pathway. Proc Natl Acad Sci U S A (2004) 1.69
Bacterial classifications derived from recA protein sequence comparisons. J Bacteriol (1995) 1.66
Photorhabdus virulence cassettes confer injectable insecticidal activity against the wax moth. J Bacteriol (2006) 1.49
Cloning Serratia entomophila antifeeding genes--a putative defective prophage active against the grass grub Costelytra zealandica. J Bacteriol (2004) 1.40
Murine toxin of Yersinia pestis shows phospholipase D activity but is not required for virulence in mice. Int J Med Microbiol (2000) 1.28
Oligotrophic bacterioplankton with a novel single-cell life strategy. Appl Environ Microbiol (2004) 1.25
Response of Alteromonadaceae and Rhodobacteriaceae to glucose and phosphorus manipulation in marine mesocosms. Environ Microbiol (2007) 1.22
Growth of Vibrio cholerae O1 in red tide waters off California. Appl Environ Microbiol (2003) 1.17
Protein homology network families reveal step-wise diversification of Type III and Type IV secretion systems. PLoS Comput Biol (2006) 1.10
Pathogenicity islands and their role in bacterial virulence and survival. Contrib Microbiol (2005) 0.93
A two-partner secretion system is involved in seed and root colonization and iron uptake by Pseudomonas putida KT2440. Environ Microbiol (2006) 0.92
Salmonella enterica SpvB-mediated ADP-ribosylation as an activator for host cell actin degradation. Int J Med Microbiol (2005) 0.81
Crystallization of truncated hemolysin A from Proteus mirabilis. Acta Crystallogr Sect F Struct Biol Cryst Commun (2005) 0.80
Unravelling the biology of macrophage infection by gene expression profiling of intracellular Salmonella enterica. Mol Microbiol (2003) 6.47
Overview of the marine roseobacter lineage. Appl Environ Microbiol (2005) 5.79
Role of Escherichia coli curli operons in directing amyloid fiber formation. Science (2002) 5.58
Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature (2004) 5.00
Assembling the marine metagenome, one cell at a time. PLoS One (2009) 4.10
An endonuclease allows Streptococcus pneumoniae to escape from neutrophil extracellular traps. Curr Biol (2006) 3.69
Light stimulates growth of proteorhodopsin-containing marine Flavobacteria. Nature (2007) 3.20
Functional adaptation of BabA, the H. pylori ABO blood group antigen binding adhesin. Science (2004) 3.06
Bacterial taxa that limit sulfur flux from the ocean. Science (2006) 2.79
Toll-like receptor 4 resides in the Golgi apparatus and colocalizes with internalized lipopolysaccharide in intestinal epithelial cells. J Exp Med (2002) 2.53
Bacterial adhesins in host-microbe interactions. Cell Host Microbe (2009) 2.43
Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities. ISME J (2009) 2.42
Bacterial strategies for overcoming host innate and adaptive immune responses. Nat Immunol (2002) 2.33
Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean. Proc Natl Acad Sci U S A (2013) 2.27
Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria). Proc Natl Acad Sci U S A (2008) 2.20
The Salmonella enterica subspecies I specific centisome 7 genomic island encodes novel protein families present in bacteria living in close contact with eukaryotic cells. Res Microbiol (2002) 2.18
Intracellular recognition of lipopolysaccharide by toll-like receptor 4 in intestinal epithelial cells. J Exp Med (2003) 2.05
All roads lead to home: panmixia of European eel in the Sargasso Sea. Mol Ecol (2011) 2.03
A small-molecule inhibitor of type III secretion inhibits different stages of the infectious cycle of Chlamydia trachomatis. Proc Natl Acad Sci U S A (2006) 2.01
Biochemistry, evolution and physiological function of the Rnf complex, a novel ion-motive electron transport complex in prokaryotes. Cell Mol Life Sci (2010) 1.99
Capsule and D-alanylated lipoteichoic acids protect Streptococcus pneumoniae against neutrophil extracellular traps. Cell Microbiol (2007) 1.99
Intraclonal variations among Streptococcus pneumoniae isolates influence the likelihood of invasive disease in children. J Infect Dis (2013) 1.84
Large variabilities in host strain susceptibility and phage host range govern interactions between lytic marine phages and their Flavobacterium hosts. Appl Environ Microbiol (2007) 1.83
Polynucleotide phosphorylase is a global regulator of virulence and persistency in Salmonella enterica. Proc Natl Acad Sci U S A (2002) 1.83
Neutrophil extracellular traps: casting the NET over pathogenesis. Curr Opin Microbiol (2007) 1.80
Proteorhodopsin phototrophy promotes survival of marine bacteria during starvation. PLoS Biol (2010) 1.77
Ecology of marine Bacteroidetes: a comparative genomics approach. ISME J (2013) 1.76
Dissemination of multidrug-resistant bacteria into the Arctic. Emerg Infect Dis (2008) 1.74
DNA phosphorothioation is widespread and quantized in bacterial genomes. Proc Natl Acad Sci U S A (2011) 1.69
Role of A-type lamins in signaling, transcription, and chromatin organization. J Cell Biol (2009) 1.68
Structure of the connector of bacteriophage T7 at 8A resolution: structural homologies of a basic component of a DNA translocating machinery. J Mol Biol (2005) 1.63
Toll-like receptor 9 acts at an early stage in host defence against pneumococcal infection. Cell Microbiol (2006) 1.62
Emergence of hypervirulent mutants resistant to early clearance during systemic serotype 1 pneumococcal infection in mice and humans. J Infect Dis (2014) 1.62
Myeloid differentiation factor 88-dependent signalling controls bacterial growth during colonization and systemic pneumococcal disease in mice. Cell Microbiol (2005) 1.59
Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH. FEMS Microbiol Ecol (2007) 1.57
A mechanism of AP-1 suppression through interaction of c-Fos with lamin A/C. Genes Dev (2006) 1.56
Bacteriophages drive strain diversification in a marine Flavobacterium: implications for phage resistance and physiological properties. Environ Microbiol (2009) 1.55
Virulence in mice of pneumococcal clonal types with known invasive disease potential in humans. J Infect Dis (2005) 1.51
Streptococcus pneumoniae contains 3 rlrA pilus variants that are clonally related. J Infect Dis (2008) 1.49
The Escherichia coli BarA-UvrY two-component system is needed for efficient switching between glycolytic and gluconeogenic carbon sources. J Bacteriol (2003) 1.44
Salicylidene acylhydrazides that affect type III protein secretion in Salmonella enterica serovar typhimurium. Antimicrob Agents Chemother (2007) 1.43
Gastric mucosal recognition of Helicobacter pylori is independent of Toll-like receptor 4. J Infect Dis (2003) 1.39
Comparative proteome analysis of Mycobacterium tuberculosis grown under aerobic and anaerobic conditions. Microbiology (2004) 1.39
Role for urea in nitrification by polar marine Archaea. Proc Natl Acad Sci U S A (2012) 1.38
Use of microautoradiography combined with fluorescence in situ hybridization to determine dimethylsulfoniopropionate incorporation by marine bacterioplankton taxa. Appl Environ Microbiol (2004) 1.37
Structuring of bacterioplankton communities by specific dissolved organic carbon compounds. Environ Microbiol (2012) 1.36
Roles of curli, cellulose and BapA in Salmonella biofilm morphology studied by atomic force microscopy. BMC Microbiol (2007) 1.33
The rise and fall of bacterial clones: Streptococcus pneumoniae. Nat Rev Microbiol (2008) 1.32
Correlation between cag pathogenicity island composition and Helicobacter pylori-associated gastroduodenal disease. Infect Immun (2003) 1.32
The three-dimensional structure of an eukaryotic glutamine synthetase: functional implications of its oligomeric structure. J Struct Biol (2006) 1.31
Structural requirements for TLR4-mediated LPS signalling: a biological role for LPS modifications. Microbes Infect (2003) 1.30
A sequential study of serum bacterial DNA in patients with advanced cirrhosis and ascites. Hepatology (2004) 1.29
Mesenteric lymph nodes confine dendritic cell-mediated dissemination of Salmonella enterica serovar Typhimurium and limit systemic disease in mice. Infect Immun (2009) 1.28
Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria. PLoS One (2011) 1.27
Oligotrophic bacterioplankton with a novel single-cell life strategy. Appl Environ Microbiol (2004) 1.25
Viral control of bacterial biodiversity--evidence from a nutrient-enriched marine mesocosm experiment. Environ Microbiol (2009) 1.24
Oceanic fronts in the Sargasso Sea control the early life and drift of Atlantic eels. Proc Biol Sci (2010) 1.24
LytA, major autolysin of Streptococcus pneumoniae, requires access to nascent peptidoglycan. J Biol Chem (2012) 1.23
Twelve previously unknown phage genera are ubiquitous in global oceans. Proc Natl Acad Sci U S A (2013) 1.23
Response of Alteromonadaceae and Rhodobacteriaceae to glucose and phosphorus manipulation in marine mesocosms. Environ Microbiol (2007) 1.22
Sortase-mediated assembly and surface topology of adhesive pneumococcal pili. Mol Microbiol (2008) 1.22
Grazing rates and functional diversity of uncultured heterotrophic flagellates. ISME J (2009) 1.21
Polynucleotide phosphorylase negatively controls spv virulence gene expression in Salmonella enterica. Infect Immun (2006) 1.21
Active nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea. ISME J (2013) 1.21
Role of elastin in spontaneously hypertensive rat small mesenteric artery remodelling. J Physiol (2003) 1.20
RAMI: a tool for identification and characterization of phylogenetic clusters in microbial communities. Bioinformatics (2009) 1.20
Annual variations in the diversity, viability, and origin of airborne bacteria. Appl Environ Microbiol (2010) 1.20
Streptococcus pneumoniae evades human dendritic cell surveillance by pneumolysin expression. EMBO Mol Med (2009) 1.19
Recruitment of members from the rare biosphere of marine bacterioplankton communities after an environmental disturbance. Appl Environ Microbiol (2011) 1.18
Capsular expression in Streptococcus pneumoniae negatively affects spontaneous and antibiotic-induced lysis and contributes to antibiotic tolerance. J Infect Dis (2003) 1.18
Genetic analysis of colistin resistance in Salmonella enterica serovar Typhimurium. Antimicrob Agents Chemother (2009) 1.17
Dominant role of nucleotide substitution in the diversification of serotype 3 pneumococci over decades and during a single infection. PLoS Genet (2013) 1.17
Mechanism and fitness costs of PR-39 resistance in Salmonella enterica serovar Typhimurium LT2. Antimicrob Agents Chemother (2008) 1.16
IPy2BF4-promoted intramolecular addition of masked and unmasked anilines to alkynes: direct assembly of 3-iodoindole cores. Angew Chem Int Ed Engl (2003) 1.16
Molecular characterization of the acid-inducible asr gene of Escherichia coli and its role in acid stress response. J Bacteriol (2003) 1.16
Study of TLR3, TLR4, and TLR9 in prostate carcinomas and their association with biochemical recurrence. Cancer Immunol Immunother (2010) 1.14
Thioredoxin 1 promotes intracellular replication and virulence of Salmonella enterica serovar Typhimurium. Infect Immun (2006) 1.14
Genomics and physiology of a marine flavobacterium encoding a proteorhodopsin and a xanthorhodopsin-like protein. PLoS One (2013) 1.14
Cultivated single-stranded DNA phages that infect marine Bacteroidetes prove difficult to detect with DNA-binding stains. Appl Environ Microbiol (2011) 1.14
Fusidic acid-resistant mutants of Salmonella enterica serovar Typhimurium with low fitness in vivo are defective in RpoS induction. Antimicrob Agents Chemother (2003) 1.13
Benefits and pitfalls of using microarrays to monitor bacterial gene expression during infection. Curr Opin Microbiol (2004) 1.09
Disulfide bond formation and cysteine exclusion in gram-positive bacteria. J Biol Chem (2009) 1.09
An enzymatic ruler modulates Lewis antigen glycosylation of Helicobacter pylori LPS during persistent infection. Proc Natl Acad Sci U S A (2006) 1.09
Dimethylsulfoniopropionate turnover is linked to the composition and dynamics of the bacterioplankton assemblage during a microcosm phytoplankton bloom. Appl Environ Microbiol (2005) 1.06
Uptake and replication of Salmonella enterica in Acanthamoeba rhysodes. Appl Environ Microbiol (2004) 1.06
ERK1/2 MAP kinases promote cell cycle entry by rapid, kinase-independent disruption of retinoblastoma-lamin A complexes. J Cell Biol (2010) 1.05
Two crystal structures of pneumococcal pilus sortase C provide novel insights into catalysis and substrate specificity. J Mol Biol (2009) 1.05
Neptuniibacter caesariensis gen. nov., sp. nov., a novel marine genome-sequenced gammaproteobacterium. Int J Syst Evol Microbiol (2007) 1.03
Phylogenetic identification and metabolism of marine dimethylsulfide-consuming bacteria. Environ Microbiol (2006) 1.03