Published in PLoS One on November 30, 2011
The prodomain of the Bordetella two-partner secretion pathway protein FhaB remains intracellular yet affects the conformation of the mature C-terminal domain. Mol Microbiol (2012) 0.84
Plasmacytoid dendritic cell-derived IFNα modulates Th17 differentiation during early Bordetella pertussis infection in mice. Mucosal Immunol (2015) 0.77
New Insight into Filamentous Hemagglutinin Secretion Reveals a Role for Full-Length FhaB in Bordetella Virulence. MBio (2015) 0.77
Histophilus somni Stimulates Expression of Antiviral Proteins and Inhibits BRSV Replication in Bovine Respiratory Epithelial Cells. PLoS One (2016) 0.76
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods (2001) 414.27
Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A (1998) 192.97
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature (2000) 64.32
Differential roles of TLR2 and TLR4 in recognition of gram-negative and gram-positive bacterial cell wall components. Immunity (1999) 17.40
Identification of genes differentially regulated by interferon alpha, beta, or gamma using oligonucleotide arrays. Proc Natl Acad Sci U S A (1998) 13.39
Cellular responses to interferon-gamma. Annu Rev Immunol (1997) 13.23
A simple chemically defined medium for the production of phase I Bordetella pertussis. J Gen Microbiol (1970) 8.89
Tn5-induced mutations affecting virulence factors of Bordetella pertussis. Infect Immun (1983) 8.49
Innate immunity. N Engl J Med (2000) 7.03
Individuality and variation in gene expression patterns in human blood. Proc Natl Acad Sci U S A (2003) 6.49
Molecular pathogenesis, epidemiology, and clinical manifestations of respiratory infections due to Bordetella pertussis and other Bordetella subspecies. Clin Microbiol Rev (2005) 6.02
Human macrophage activation programs induced by bacterial pathogens. Proc Natl Acad Sci U S A (2002) 5.18
Filamentous hemagglutinin of Bordetella pertussis: nucleotide sequence and crucial role in adherence. Proc Natl Acad Sci U S A (1989) 4.87
Influenza B virus NS1 protein inhibits conjugation of the interferon (IFN)-induced ubiquitin-like ISG15 protein. EMBO J (2001) 4.61
The interferon response circuit: induction and suppression by pathogenic viruses. Virology (2006) 4.56
Recognition of a bacterial adhesion by an integrin: macrophage CR3 (alpha M beta 2, CD11b/CD18) binds filamentous hemagglutinin of Bordetella pertussis. Cell (1990) 4.47
Insights into host responses against pathogens from transcriptional profiling. Nat Rev Microbiol (2005) 4.11
Stereotyped and specific gene expression programs in human innate immune responses to bacteria. Proc Natl Acad Sci U S A (2002) 3.85
The yin and yang of type I interferon activity in bacterial infection. Nat Rev Immunol (2005) 3.65
UBP43 (USP18) specifically removes ISG15 from conjugated proteins. J Biol Chem (2002) 3.52
Accumulation of an mRNA and protein in interferon-treated Ehrlich ascites tumour cells. Nature (1979) 3.43
Innate antiviral response targets HIV-1 release by the induction of ubiquitin-like protein ISG15. Proc Natl Acad Sci U S A (2006) 3.31
Identification of interferon-stimulated gene 15 as an antiviral molecule during Sindbis virus infection in vivo. J Virol (2005) 3.10
Mutants of pertussis toxin suitable for vaccine development. Science (1989) 2.89
Patterns of host genome-wide gene transcript abundance in the peripheral blood of patients with acute dengue hemorrhagic fever. J Infect Dis (2007) 2.89
UBP43 is a novel regulator of interferon signaling independent of its ISG15 isopeptidase activity. EMBO J (2006) 2.84
Phosphorelay control of virulence gene expression in Bordetella. Trends Microbiol (2003) 2.60
Immunoregulatory properties of ISG15, an interferon-induced cytokine. Proc Natl Acad Sci U S A (1996) 2.45
The lymphochip: a specialized cDNA microarray for the genomic-scale analysis of gene expression in normal and malignant lymphocytes. Cold Spring Harb Symp Quant Biol (1999) 2.40
Protein ISGylation modulates the JAK-STAT signaling pathway. Genes Dev (2003) 2.24
Proteomic identification of proteins conjugated to ISG15 in mouse and human cells. Biochem Biophys Res Commun (2005) 2.18
In vitro and in vivo secretion of human ISG15, an IFN-induced immunomodulatory cytokine. J Immunol (1996) 1.98
ISG15 conjugation system targets the viral NS1 protein in influenza A virus-infected cells. Proc Natl Acad Sci U S A (2010) 1.89
Immunity to Bordetella pertussis. Microbes Infect (2001) 1.86
The host response to smallpox: analysis of the gene expression program in peripheral blood cells in a nonhuman primate model. Proc Natl Acad Sci U S A (2004) 1.85
Bordetella pertussis filamentous hemagglutinin interacts with a leukocyte signal transduction complex and stimulates bacterial adherence to monocyte CR3 (CD11b/CD18). J Exp Med (1994) 1.81
Interaction of the Bordetella pertussis filamentous hemagglutinin with heparin. FEMS Microbiol Lett (1991) 1.81
Filamentous hemagglutinin of Bordetella bronchiseptica is required for efficient establishment of tracheal colonization. Infect Immun (1998) 1.74
Pertussis: review of epidemiology, diagnosis, management and prevention. Paediatr Respir Rev (2008) 1.65
ISG15: a ubiquitin-like enigma. Front Biosci (2005) 1.58
Uptake and intracellular survival of Bordetella pertussis in human macrophages. Infect Immun (1992) 1.56
Direct anti-inflammatory effect of a bacterial virulence factor: IL-10-dependent suppression of IL-12 production by filamentous hemagglutinin from Bordetella pertussis. Eur J Immunol (2000) 1.56
Sulfated glycoconjugate receptors for the Bordetella pertussis adhesin filamentous hemagglutinin (FHA) and mapping of the heparin-binding domain on FHA. Infect Immun (1994) 1.54
The transcriptional responses of respiratory epithelial cells to Bordetella pertussis reveal host defensive and pathogen counter-defensive strategies. Proc Natl Acad Sci U S A (2000) 1.53
Significant gene order and expression differences in Bordetella pertussis despite limited gene content variation. J Bacteriol (2006) 1.48
A human 15-kDa IFN-induced protein induces the secretion of IFN-gamma. J Immunol (1991) 1.47
Quantification of bacterial lipopolysaccharides by the purpald assay: measuring formaldehyde generated from 2-keto-3-deoxyoctonate and heptose at the inner core by periodate oxidation. Anal Biochem (1999) 1.46
Identification of a carbohydrate recognition domain in filamentous hemagglutinin from Bordetella pertussis. Infect Immun (1993) 1.42
Gene-expression patterns reveal underlying biological processes in Kawasaki disease. Genome Biol (2007) 1.39
The subunit S1 is important for pertussis toxin secretion. J Biol Chem (1990) 1.33
ISG15 enhances the innate antiviral response by inhibition of IRF-3 degradation. Cell Mol Biol (Noisy-le-grand) (2006) 1.33
Regulation of monocyte integrin expression by beta-family chemokines. J Immunol (1994) 1.30
SB202190, a selective inhibitor of p38 mitogen-activated protein kinase, is a powerful regulator of LPS-induced mRNAs in monocytes. J Leukoc Biol (1998) 1.29
Bordetella filamentous hemagglutinin plays a critical role in immunomodulation, suggesting a mechanism for host specificity. Proc Natl Acad Sci U S A (2005) 1.29
Topology and maturation of filamentous haemagglutinin suggest a new model for two-partner secretion. Mol Microbiol (2006) 1.27
Role of adhesin release for mucosal colonization by a bacterial pathogen. J Exp Med (2003) 1.26
Differential effects of neutrophil-activating peptide 1/IL-8 and its homologues on leukocyte adhesion and phagocytosis. J Immunol (1991) 1.26
Proinflammatory and proapoptotic activities associated with Bordetella pertussis filamentous hemagglutinin. Infect Immun (2001) 1.25
Regulation of gene expression in mouse macrophages stimulated with bacterial CpG-DNA and lipopolysaccharide. J Leukoc Biol (2002) 1.25
Antiviral activity of innate immune protein ISG15. J Innate Immun (2009) 1.25
Macrophage cytotoxicity produced by adenylate cyclase toxin from Bordetella pertussis: more than just making cyclic AMP! Mol Microbiol (2006) 1.24
IFN-induced 15-kDa protein is released from human lymphocytes and monocytes. J Immunol (1991) 1.22
THP-1 monocytes up-regulate intercellular adhesion molecule 1 in response to pneumolysin from Streptococcus pneumoniae. Infect Immun (2005) 1.20
The temporal program of peripheral blood gene expression in the response of nonhuman primates to Ebola hemorrhagic fever. Genome Biol (2007) 1.20
ISG15 modification of ubiquitin E2 Ubc13 disrupts its ability to form thioester bond with ubiquitin. Biochem Biophys Res Commun (2005) 1.17
The interferon regulated ubiquitin-like protein, ISG15, in tumorigenesis: friend or foe? Cytokine Growth Factor Rev (2006) 1.13
Influence of CR3 (CD11b/CD18) expression on phagocytosis of Bordetella pertussis by human neutrophils. Infect Immun (2005) 1.13
Invasion of human respiratory epithelial cells by Bordetella pertussis: possible role for a filamentous hemagglutinin Arg-Gly-Asp sequence and alpha5beta1 integrin. Microb Pathog (2001) 1.05
Importance of holotoxin assembly in Ptl-mediated secretion of pertussis toxin from Bordetella pertussis. Infect Immun (2000) 1.05
Bordetella pertussis inhibition of interleukin-12 (IL-12) p70 in human monocyte-derived dendritic cells blocks IL-12 p35 through adenylate cyclase toxin-dependent cyclic AMP induction. Infect Immun (2006) 1.01
Pertussis: persistent pathogen, imperfect vaccines. Expert Rev Vaccines (2003) 1.00
Gene transcript abundance profiles distinguish Kawasaki disease from adenovirus infection. J Infect Dis (2009) 0.99
Suppression of T-lymphocyte activation and chemotaxis by the adenylate cyclase toxin of Bordetella pertussis. Infect Immun (2008) 0.97
Camptothecin induces the ubiquitin-like protein, ISG15, and enhances ISG15 conjugation in response to interferon. J Interferon Cytokine Res (2004) 0.96
Enzyme immunoassays for the estimation of adenosine 3',5' cyclic monophosphate and guanosine 3',5' cyclic monophosphate in biological fluids. J Immunol Methods (1992) 0.91
Regulation of the nuclear factor (NF)-kappaB pathway by ISGylation. Biol Pharm Bull (2008) 0.91
Negative regulation of protein phosphatase 2Cbeta by ISG15 conjugation. FEBS Lett (2006) 0.90
Bordetella adenylate cyclase toxin promotes calcium entry into both CD11b+ and CD11b- cells through cAMP-dependent L-type-like calcium channels. J Biol Chem (2009) 0.90
Transcriptional responses of murine macrophages to the adenylate cyclase toxin of Bordetella pertussis. Microb Pathog (2007) 0.89
Modulation of the NF-kappaB pathway by Bordetella pertussis filamentous hemagglutinin. PLoS One (2008) 0.84
Proteomic and gene profiling approaches to study host responses to bacterial infection. Curr Opin Microbiol (2004) 0.82
Diversity of the human intestinal microbial flora. Science (2005) 49.64
Metagenomic analysis of the human distal gut microbiome. Science (2006) 29.76
Development of the human infant intestinal microbiota. PLoS Biol (2007) 18.91
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol (2008) 16.57
An ecological and evolutionary perspective on human-microbe mutualism and disease. Nature (2007) 10.92
Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. PLoS Genet (2008) 10.72
Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proc Natl Acad Sci U S A (2010) 8.56
Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth. Proc Natl Acad Sci U S A (2007) 7.82
Molecular analysis of the bacterial microbiota in the human stomach. Proc Natl Acad Sci U S A (2006) 7.77
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol (2011) 7.53
Individuality and variation in gene expression patterns in human blood. Proc Natl Acad Sci U S A (2003) 6.49
Gut immune maturation depends on colonization with a host-specific microbiota. Cell (2012) 5.91
Microbiology in the post-genomic era. Nat Rev Microbiol (2008) 4.88
The application of ecological theory toward an understanding of the human microbiome. Science (2012) 4.69
Stereotyped and specific gene expression programs in human innate immune responses to bacteria. Proc Natl Acad Sci U S A (2002) 3.85
Bacterial diversity in the oral cavity of 10 healthy individuals. ISME J (2010) 3.39
Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei. Lancet (2003) 3.30
Assembly of the human intestinal microbiota. Trends Ecol Evol (2006) 3.21
Microbial prevalence, diversity and abundance in amniotic fluid during preterm labor: a molecular and culture-based investigation. PLoS One (2008) 3.01
Patterns of host genome-wide gene transcript abundance in the peripheral blood of patients with acute dengue hemorrhagic fever. J Infect Dis (2007) 2.89
Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization. Genome Res (2012) 2.81
Host transmission of Salmonella enterica serovar Typhimurium is controlled by virulence factors and indigenous intestinal microbiota. Infect Immun (2007) 2.80
Rapid quantitative profiling of complex microbial populations. Nucleic Acids Res (2006) 2.75
Prevalence of bacteria of division TM7 in human subgingival plaque and their association with disease. Appl Environ Microbiol (2003) 2.72
Bordetella pertussis, the causative agent of whooping cough, evolved from a distinct, human-associated lineage of B. bronchiseptica. PLoS Pathog (2005) 2.71
Methanogenic Archaea and human periodontal disease. Proc Natl Acad Sci U S A (2004) 2.68
Microbial threat lists: obstacles in the quest for biosecurity? Nat Rev Microbiol (2010) 2.63
Public health and biosecurity. Adaptations of avian flu virus are a cause for concern. Science (2012) 2.52
Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time. Genome Res (2010) 2.46
Exploring the potential of variola virus infection of cynomolgus macaques as a model for human smallpox. Proc Natl Acad Sci U S A (2004) 2.36
Type I interferon suppresses type II interferon-triggered human anti-mycobacterial responses. Science (2013) 2.34
Strain-resolved community genomic analysis of gut microbial colonization in a premature infant. Proc Natl Acad Sci U S A (2010) 2.09
Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States. PLoS One (2013) 1.86
Archaea and their potential role in human disease. Infect Immun (2003) 1.86
The host response to smallpox: analysis of the gene expression program in peripheral blood cells in a nonhuman primate model. Proc Natl Acad Sci U S A (2004) 1.85
Microbiota-targeted therapies: an ecological perspective. Sci Transl Med (2012) 1.80
Prevalence and diversity of microbes in the amniotic fluid, the fetal inflammatory response, and pregnancy outcome in women with preterm pre-labor rupture of membranes. Am J Reprod Immunol (2010) 1.74
Dissecting interferon-induced transcriptional programs in human peripheral blood cells. PLoS One (2010) 1.73
Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota. Proc Natl Acad Sci U S A (2013) 1.69
Genomewide analysis of the host response to malaria in Kenyan children. J Infect Dis (2005) 1.66
The role of microbes in Crohn's disease. Clin Infect Dis (2006) 1.65
Cultivation of Tropheryma whipplei from cerebrospinal fluid. J Infect Dis (2003) 1.58
Single-cell enumeration of an uncultivated TM7 subgroup in the human subgingival crevice. Appl Environ Microbiol (2003) 1.58
Linking microbial phylogeny to metabolic activity at the single-cell level by using enhanced element labeling-catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS. Appl Environ Microbiol (2008) 1.56
Role of interleukin 6 in myocardial dysfunction of meningococcal septic shock. Lancet (2004) 1.56
Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome. ISME J (2011) 1.55
Early days: genomics and human responses to infection. Curr Opin Microbiol (2006) 1.54
Policy: Adaptations of avian flu virus are a cause for concern. Nature (2012) 1.54
Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity. Proc Natl Acad Sci U S A (2010) 1.53
Significant gene order and expression differences in Bordetella pertussis despite limited gene content variation. J Bacteriol (2006) 1.48
Genomics and microbiology. Microbial forensics--"cross-examining pathogens". Science (2002) 1.47
Transforming growth factor-beta signaling pathway in patients with Kawasaki disease. Circ Cardiovasc Genet (2010) 1.45
Antibiotics and the gut microbiota. J Clin Invest (2014) 1.39
Gene-expression patterns reveal underlying biological processes in Kawasaki disease. Genome Biol (2007) 1.39
Images in clinical medicine. Progression of the lesion at the site of inoculation after smallpox vaccination. N Engl J Med (2003) 1.37
Comparative analysis of viral gene expression programs during poxvirus infection: a transcriptional map of the vaccinia and monkeypox genomes. PLoS One (2008) 1.37
In search of biosecurity. Science (2006) 1.33
Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB). Genome Res (2012) 1.28
Creating a mammalian-transmissible A/H5N1 influenza virus: social contracts, prudence, and alternative perspectives. J Infect Dis (2012) 1.22
Microbiology: Learning about who we are. Nature (2012) 1.22
Smallpox research activities: U.S. interagency collaboration, 2001. Emerg Infect Dis (2002) 1.20
The temporal program of peripheral blood gene expression in the response of nonhuman primates to Ebola hemorrhagic fever. Genome Biol (2007) 1.20
Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses. Environ Microbiol (2012) 1.16
Broad-range bacterial detection and the analysis of unexplained death and critical illness. Emerg Infect Dis (2002) 1.15
Comparisons of distance methods for combining covariates and abundances in microbiome studies. Pac Symp Biocomput (2012) 1.04
Public health. Understanding threats to scientific openness. Science (2003) 1.02
Transcriptional profiling of the iron starvation response in Bordetella pertussis provides new insights into siderophore utilization and virulence gene expression. J Bacteriol (2011) 1.02
Microbiome assembly across multiple body sites in low-birthweight infants. MBio (2013) 1.02
Metagenomics, infectious disease diagnostics, and outbreak investigations: sequence first, ask questions later? JAMA (2013) 1.00
Temporal dynamics of the transcriptional response to dengue virus infection in Nicaraguan children. PLoS Negl Trop Dis (2012) 0.99
Growth phase- and nutrient limitation-associated transcript abundance regulation in Bordetella pertussis. Infect Immun (2006) 0.99
Gene transcript abundance profiles distinguish Kawasaki disease from adenovirus infection. J Infect Dis (2009) 0.99
Stunned silence: gene expression programs in human cells infected with monkeypox or vaccinia virus. PLoS One (2011) 0.98
The increasingly compelling moral responsibilities of life scientists. Hastings Cent Rep (2013) 0.96
Microbial invasion of the amniotic cavity in pregnancies with small-for-gestational-age fetuses. J Perinat Med (2010) 0.95
Phase variation and microevolution at homopolymeric tracts in Bordetella pertussis. BMC Genomics (2007) 0.93
SmashCell: a software framework for the analysis of single-cell amplified genome sequences. Bioinformatics (2010) 0.93
Microbial invasion of the amniotic cavity in preeclampsia as assessed by cultivation and sequence-based methods. J Perinat Med (2010) 0.92
Myocardial depressant effects of interleukin 6 in meningococcal sepsis are regulated by p38 mitogen-activated protein kinase. Crit Care Med (2011) 0.89
The human body as microbial observatory. Nat Genet (2002) 0.89
Identification of Cardiobacterium hominis by broad-range bacterial polymerase chain reaction analysis in a case of culture-negative endocarditis. Arch Intern Med (2002) 0.88
Redaction of sensitive data in the publication of dual use research of concern. MBio (2013) 0.88
Bordetella pertussis infection of primary human monocytes alters HLA-DR expression. Infect Immun (2004) 0.87
Genomic features of Bordetella parapertussis clades with distinct host species specificity. Genome Biol (2006) 0.86
VCAM-1 expression on CD8+ cells correlates with enhanced anti-HIV suppressing activity. J Immunol (2005) 0.85
Molecular identification of cyanobacteria associated with stromatolites from distinct geographical locations. Astrobiology (2002) 0.84
Modulation of the NF-kappaB pathway by Bordetella pertussis filamentous hemagglutinin. PLoS One (2008) 0.84
Analysis of conserved non-rRNA genes of Tropheryma whipplei. Syst Appl Microbiol (2003) 0.83
Majority rules? Tallying the microbial census in an abscess by means of molecular methods. Clin Infect Dis (2009) 0.82
Genetic technologies. Synthetic "life," ethics, national security, and public discourse. Science (2010) 0.81
Role of phosphatidylinositol 3-kinase in the binding of Bordetella pertussis to human monocytes. Cell Microbiol (2002) 0.80
Human herpesvirus 8 and sarcoidosis. Clin Infect Dis (2002) 0.80
Lethal invasive cestodiasis in immunosuppressed patients. J Infect Dis (2003) 0.78
The importance of individuals and scale: moving towards single cell microbiology. Environ Microbiol (2007) 0.78
Learning to appreciate our differences. J Infect Dis (2008) 0.77
Cross-talk in the gut. Genome Biol (2009) 0.76
Unrest at home: diarrheal disease and microbiota disturbance. Genome Biol (2014) 0.75
Mining the natural world for new pathogens. Am J Trop Med Hyg (2002) 0.75
Microbiota's 'little helpers': bacteriophages and antibiotic-associated responses in the gut microbiome. Genome Biol (2013) 0.75