Published in BMC Genomics on January 03, 2012
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Site-specific genome editing in Plasmodium falciparum using engineered zinc-finger nucleases. Nat Methods (2012) 1.79
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Plasmodium falciparum genetic crosses in a humanized mouse model. Nat Methods (2015) 0.84
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Optimized whole-genome amplification strategy for extremely AT-biased template. DNA Res (2014) 0.82
The minimal amount of starting DNA for Agilent's hybrid capture-based targeted massively parallel sequencing. Sci Rep (2016) 0.82
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Deconstructing the genetic basis of spent sulphite liquor tolerance using deep sequencing of genome-shuffled yeast. Biotechnol Biofuels (2015) 0.80
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The impact of library preparation protocols on the consistency of allele frequency estimates in Pool-Seq data. Mol Ecol Resour (2015) 0.80
Atypical mitogen-activated protein kinase phosphatase implicated in regulating transition from pre-S-Phase asexual intraerythrocytic development of Plasmodium falciparum. Eukaryot Cell (2013) 0.80
Characterization of repetitive DNA landscape in wheat homeologous group 4 chromosomes. BMC Genomics (2015) 0.79
PMDBase: a database for studying microsatellite DNA and marker development in plants. Nucleic Acids Res (2016) 0.79
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Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools. BMC Genomics (2016) 0.78
An unclassified microorganism: novel pathogen candidate lurking in human airways. PLoS One (2014) 0.78
Comparison of Sample Preparation Methods Used for the Next-Generation Sequencing of Mycobacterium tuberculosis. PLoS One (2016) 0.78
Use of Targeted Exome Sequencing for Molecular Diagnosis of Skeletal Disorders. PLoS One (2015) 0.77
Genetic and Targeted eQTL Mapping Reveals Strong Candidate Genes Modulating the Stress Response During Chicken Domestication. G3 (Bethesda) (2016) 0.77
Complete telomere-to-telomere de novo assembly of the Plasmodium falciparum genome through long-read (>11 kb), single molecule, real-time sequencing. DNA Res (2016) 0.77
CoSREM: a graph mining algorithm for the discovery of combinatorial splicing regulatory elements. BMC Bioinformatics (2015) 0.77
Genome and metagenome sequencing: Using the human methyl-binding domain to partition genomic DNA derived from plant tissues. Appl Plant Sci (2014) 0.77
Direct next-generation sequencing of virus-human mixed samples without pretreatment is favorable to recover virus genome. Biol Direct (2016) 0.77
Development of a RAD-Seq Based DNA Polymorphism Identification Software, AgroMarker Finder, and Its Application in Rice Marker-Assisted Breeding. PLoS One (2016) 0.76
Landscape and Dynamics of Transcription Initiation in the Malaria Parasite Plasmodium falciparum. Cell Rep (2016) 0.76
Quantitation of next generation sequencing library preparation protocol efficiencies using droplet digital PCR assays - a systematic comparison of DNA library preparation kits for Illumina sequencing. BMC Genomics (2016) 0.76
A bumpy ride on the diagnostic bench of massive parallel sequencing, the case of the mitochondrial genome. PLoS One (2014) 0.76
The exported chaperone Hsp70-x supports virulence functions for Plasmodium falciparum blood stage parasites. PLoS One (2017) 0.76
Biases in the SMART-DNA library preparation method associated with genomic poly dA/dT sequences. PLoS One (2017) 0.75
Genome Sequences of Four Yersinia enterocolitica Bioserotype 4/O:3 Isolates from Mammals. Genome Announc (2013) 0.75
Brain structure and intragenic DNA methylation are correlated, and predict executive dysfunction in fragile X premutation females. Transl Psychiatry (2016) 0.75
Gene Expression Analysis of Alfalfa Seedlings Response to Acid-Aluminum. Int J Genomics (2016) 0.75
Comparative transcriptomics of Entelegyne spiders (Araneae, Entelegynae), with emphasis on molecular evolution of orphan genes. PLoS One (2017) 0.75
Development of a genus-specific next generation sequencing approach for sensitive and quantitative determination of the Legionella microbiome in freshwater systems. BMC Microbiol (2017) 0.75
The Complex Transcriptional Response of Acaryochloris marina to Different Oxygen Levels. G3 (Bethesda) (2016) 0.75
Epigenetic regulation of Plasmodium falciparum clonally variant gene expression during development in Anopheles gambiae. Sci Rep (2017) 0.75
Genome-centric evaluation of Burkholderia sp. strain SRS-W-2-2016 resistant to high concentrations of uranium and nickel isolated from the Savannah River Site (SRS), USA. Genom Data (2017) 0.75
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Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res (2008) 26.36
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Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Genome Biol (2011) 9.18
PlasmoDB: a functional genomic database for malaria parasites. Nucleic Acids Res (2008) 6.73
Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology. Bioinformatics (2010) 4.18
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Low concentrations of tetramethylammonium chloride increase yield and specificity of PCR. Nucleic Acids Res (1995) 1.52
Linear amplification for deep sequencing. Nat Protoc (2011) 1.38
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Accurate whole human genome sequencing using reversible terminator chemistry. Nature (2008) 90.20
Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing. Nat Genet (2008) 43.63
Human infection with a novel avian-origin influenza A (H7N9) virus. N Engl J Med (2013) 24.88
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis. Nat Biotechnol (2008) 21.72
Massive genomic rearrangement acquired in a single catastrophic event during cancer development. Cell (2011) 16.72
A large genome center's improvements to the Illumina sequencing system. Nat Methods (2008) 15.56
Complex landscapes of somatic rearrangement in human breast cancer genomes. Nature (2009) 13.45
Evolution of MRSA during hospital transmission and intercontinental spread. Science (2010) 13.34
Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants. Nat Genet (2007) 12.62
The patterns and dynamics of genomic instability in metastatic pancreatic cancer. Nature (2010) 12.43
Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls. Nature (2010) 12.27
Spread of artemisinin resistance in Plasmodium falciparum malaria. N Engl J Med (2014) 11.87
Population genomics of domestic and wild yeasts. Nature (2009) 11.79
The genome of the African trypanosome Trypanosoma brucei. Science (2005) 11.48
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A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers. BMC Genomics (2012) 9.97
Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. Nat Genet (2003) 9.13
Rapid pneumococcal evolution in response to clinical interventions. Science (2011) 9.09
Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance. Proc Natl Acad Sci U S A (2004) 8.95
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The genome of the kinetoplastid parasite, Leishmania major. Science (2005) 8.64
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. Nature (2005) 8.55
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A genotype calling algorithm for the Illumina BeadArray platform. Bioinformatics (2007) 8.03
The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome. Nat Genet (2006) 8.02
Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei. Proc Natl Acad Sci U S A (2004) 7.30
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Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes. PLoS Genet (2006) 6.43
A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses. Science (2005) 5.99
iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution. Nat Struct Mol Biol (2010) 5.98
The genome of the blood fluke Schistosoma mansoni. Nature (2009) 5.94
Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature (2009) 5.90
Multidrug-resistant Salmonella enterica serovar paratyphi A harbors IncHI1 plasmids similar to those found in serovar typhi. J Bacteriol (2007) 5.88
Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps. Genome Biol (2010) 5.79
Human Y chromosome base-substitution mutation rate measured by direct sequencing in a deep-rooting pedigree. Curr Biol (2009) 5.70
The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability. Brief Bioinform (2013) 5.67
Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature (2012) 5.67
Neuronal MeCP2 is expressed at near histone-octamer levels and globally alters the chromatin state. Mol Cell (2010) 5.43
The genome of the protist parasite Entamoeba histolytica. Nature (2005) 5.33
Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia. Nat Genet (2013) 5.22
Severe anemia in Malawian children. N Engl J Med (2008) 5.20
In vivo characterization of regulatory polymorphisms by allele-specific quantification of RNA polymerase loading. Nat Genet (2003) 5.10
ABACAS: algorithm-based automatic contiguation of assembled sequences. Bioinformatics (2009) 4.98
CpG islands influence chromatin structure via the CpG-binding protein Cfp1. Nature (2010) 4.86
The RNA WikiProject: community annotation of RNA families. RNA (2008) 4.83
Comparative genomic analysis of three Leishmania species that cause diverse human disease. Nat Genet (2007) 4.58
Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing. Nature (2012) 4.37
Genome-wide and fine-resolution association analysis of malaria in West Africa. Nat Genet (2009) 4.30
A Mal functional variant is associated with protection against invasive pneumococcal disease, bacteremia, malaria and tuberculosis. Nat Genet (2007) 4.23
Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants. Genome Res (2009) 4.12
Insights into hominid evolution from the gorilla genome sequence. Nature (2012) 4.12
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience (2013) 4.11
Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia. Proc Natl Acad Sci U S A (2012) 4.10
High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome. Genome Res (2011) 4.09
The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants. Genome Biol (2008) 3.85
Basigin is a receptor essential for erythrocyte invasion by Plasmodium falciparum. Nature (2011) 3.83
Genome plasticity of BCG and impact on vaccine efficacy. Proc Natl Acad Sci U S A (2007) 3.73
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Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium. Genome Biol (2009) 3.66
Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. Genome Biol (2009) 3.63
FRT-seq: amplification-free, strand-specific transcriptome sequencing. Nat Methods (2010) 3.55
Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways. Genome Res (2008) 3.54
Mutation spectrum revealed by breakpoint sequencing of human germline CNVs. Nat Genet (2010) 3.52
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The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081. PLoS Genet (2006) 3.33
Bayesian refinement of association signals for 14 loci in 3 common diseases. Nat Genet (2012) 3.31
Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei. Lancet (2003) 3.30
Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis. Genome Res (2008) 3.26
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