Published in Curr Opin Microbiol on July 12, 2014
Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA. BMC Genomics (2015) 0.87
Deciphering the principles that govern mutually exclusive expression of Plasmodium falciparum clag3 genes. Nucleic Acids Res (2015) 0.84
A comprehensive epigenome map of Plasmodium falciparum reveals unique mechanisms of transcriptional regulation and identifies H3K36me2 as a global mark of gene suppression. Epigenetics Chromatin (2015) 0.83
Recent advances in malaria genomics and epigenomics. Genome Med (2016) 0.79
The molecular basis of antifolate resistance in Plasmodium falciparum: looking beyond point mutations. Ann N Y Acad Sci (2015) 0.76
Integrated analysis of the Plasmodium species transcriptome. EBioMedicine (2016) 0.76
The Emerging Role for RNA Polymerase II in Regulating Virulence Gene Expression in Malaria Parasites. PLoS Pathog (2015) 0.75
Trans-acting GC-rich non-coding RNA at var expression site modulates gene counting in malaria parasite. Nucleic Acids Res (2016) 0.75
RNase II: A new player enters the game. RNA Biol (2015) 0.75
Analysis of nucleosome positioning landscapes enables gene discovery in the human malaria parasite Plasmodium falciparum. BMC Genomics (2015) 0.75
Genome sequence of the human malaria parasite Plasmodium falciparum. Nature (2002) 37.89
RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science (2007) 18.59
Antisense transcription in the mammalian transcriptome. Science (2005) 15.69
Position effect at S. cerevisiae telomeres: reversible repression of Pol II transcription. Cell (1990) 12.50
The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum. PLoS Biol (2003) 11.86
A high-resolution map of transcription in the yeast genome. Proc Natl Acad Sci U S A (2006) 11.81
Discovery of gene function by expression profiling of the malaria parasite life cycle. Science (2003) 10.57
Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes. Nat Methods (2009) 10.41
The large diverse gene family var encodes proteins involved in cytoadherence and antigenic variation of Plasmodium falciparum-infected erythrocytes. Cell (1995) 10.35
Switches in expression of Plasmodium falciparum var genes correlate with changes in antigenic and cytoadherent phenotypes of infected erythrocytes. Cell (1995) 9.31
Cloning the P. falciparum gene encoding PfEMP1, a malarial variant antigen and adherence receptor on the surface of parasitized human erythrocytes. Cell (1995) 9.31
Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Genome Biol (2011) 9.18
Comprehensive comparative analysis of strand-specific RNA sequencing methods. Nat Methods (2010) 9.09
Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA. Nature (2008) 7.64
Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends. Science (2007) 6.33
Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D. Nucleic Acids Res (2007) 5.54
Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease. Nat Genet (2003) 5.38
The fate of dsRNA in the nucleus: a p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs. Cell (2001) 4.72
Effects of genomic position on the expression of transduced copies of the white gene of Drosophila. Science (1985) 4.58
Regulatory roles of natural antisense transcripts. Nat Rev Mol Cell Biol (2009) 4.48
Heterochromatin silencing and locus repositioning linked to regulation of virulence genes in Plasmodium falciparum. Cell (2005) 4.33
Telomeric heterochromatin propagation and histone acetylation control mutually exclusive expression of antigenic variation genes in malaria parasites. Cell (2005) 4.26
Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray. Genome Biol (2003) 4.24
A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition. Genes Dev (2008) 3.85
The epigenetic regulation of mammalian telomeres. Nat Rev Genet (2007) 3.82
Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins. Cell (2013) 3.69
Editor meets silencer: crosstalk between RNA editing and RNA interference. Nat Rev Mol Cell Biol (2006) 3.31
Optimal enzymes for amplifying sequencing libraries. Nat Methods (2011) 3.21
The Plasmodium falciparum sexual development transcriptome: a microarray analysis using ontology-based pattern identification. Mol Biochem Parasitol (2005) 3.02
Genome-wide analysis of heterochromatin associates clonally variant gene regulation with perinuclear repressive centers in malaria parasites. Cell Host Microbe (2009) 2.95
A long noncoding RNA mediates both activation and repression of immune response genes. Science (2013) 2.85
Transcriptional collision between convergent genes in budding yeast. Proc Natl Acad Sci U S A (2002) 2.84
Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains. Nucleic Acids Res (2006) 2.78
Cell-cell communication between malaria-infected red blood cells via exosome-like vesicles. Cell (2013) 2.76
New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq. Mol Microbiol (2010) 2.76
Telomere position effect in human cells. Science (2001) 2.61
Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Nature (2002) 2.59
Malaria-infected erythrocyte-derived microvesicles mediate cellular communication within the parasite population and with the host immune system. Cell Host Microbe (2013) 2.29
A single-molecule long-read survey of the human transcriptome. Nat Biotechnol (2013) 2.24
Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes. BMC Genomics (2012) 2.20
Plasmodium falciparum var genes are regulated by two regions with separate promoters, one upstream of the coding region and a second within the intron. J Biol Chem (2003) 2.16
Transcriptional variation in the malaria parasite Plasmodium falciparum. Genome Res (2012) 2.15
Epigenetic memory at malaria virulence genes. Proc Natl Acad Sci U S A (2007) 2.11
A well-conserved Plasmodium falciparum var gene shows an unusual stage-specific transcript pattern. Mol Microbiol (2003) 2.09
Ribosome profiling: new views of translation, from single codons to genome scale. Nat Rev Genet (2014) 2.04
Emerging evidence for functional peptides encoded by short open reading frames. Nat Rev Genet (2014) 1.81
iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution. J Vis Exp (2011) 1.80
Serial analysis of gene expression in Plasmodium falciparum reveals the global expression profile of erythrocytic stages and the presence of anti-sense transcripts in the malarial parasite. Mol Biol Cell (2001) 1.79
Sir2 paralogues cooperate to regulate virulence genes and antigenic variation in Plasmodium falciparum. PLoS Biol (2009) 1.72
Molecular genetics and comparative genomics reveal RNAi is not functional in malaria parasites. Nucleic Acids Res (2009) 1.71
Nucleosome landscape and control of transcription in the human malaria parasite. Genome Res (2010) 1.70
Sequence of Plasmodium falciparum chromosome 12. Nature (2002) 1.68
Widespread distribution of antisense transcripts in the Plasmodium falciparum genome. Mol Biochem Parasitol (2004) 1.68
Comparative ribosome profiling reveals extensive translational complexity in different Trypanosoma brucei life cycle stages. Nucleic Acids Res (2014) 1.63
Directional gene expression and antisense transcripts in sexual and asexual stages of Plasmodium falciparum. BMC Genomics (2011) 1.60
Analysis of short RNAs in the malaria parasite and its red blood cell host. FEBS Lett (2006) 1.60
CRISPR-based technologies: prokaryotic defense weapons repurposed. Trends Genet (2014) 1.60
A central role for Plasmodium falciparum subtelomeric regions in spatial positioning and telomere length regulation. EMBO J (2002) 1.56
Dynamic histone H3 epigenome marking during the intraerythrocytic cycle of Plasmodium falciparum. Proc Natl Acad Sci U S A (2009) 1.54
Crucial role of antisense transcription across the Xist promoter in Tsix-mediated Xist chromatin modification. Development (2007) 1.50
H2A.Z demarcates intergenic regions of the plasmodium falciparum epigenome that are dynamically marked by H3K9ac and H3K4me3. PLoS Pathog (2010) 1.47
Translocation of sickle cell erythrocyte microRNAs into Plasmodium falciparum inhibits parasite translation and contributes to malaria resistance. Cell Host Microbe (2012) 1.45
PfSETvs methylation of histone H3K36 represses virulence genes in Plasmodium falciparum. Nature (2013) 1.40
Collision events between RNA polymerases in convergent transcription studied by atomic force microscopy. Nucleic Acids Res (2006) 1.40
Structural RNAs of known and unknown function identified in malaria parasites by comparative genomics and RNA analysis. RNA (2007) 1.40
Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum. Genome Res (2007) 1.36
A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs. Genome Biol (2011) 1.32
Dealing with pervasive transcription. Mol Cell (2013) 1.29
Silence, activate, poise and switch! Mechanisms of antigenic variation in Plasmodium falciparum. Cell Microbiol (2013) 1.29
A SWI/SNF chromatin-remodeling complex acts in noncoding RNA-mediated transcriptional silencing. Mol Cell (2012) 1.29
RNA polymerase II collision interrupts convergent transcription. Mol Cell (2012) 1.28
Transcriptome analysis of antigenic variation in Plasmodium falciparum--var silencing is not dependent on antisense RNA. Genome Biol (2005) 1.25
Histone lysine methyltransferases and demethylases in Plasmodium falciparum. Int J Parasitol (2008) 1.22
Nuclear non-coding RNAs are transcribed from the centromeres of Plasmodium falciparum and are associated with centromeric chromatin. J Biol Chem (2007) 1.21
A global view of the nonprotein-coding transcriptome in Plasmodium falciparum. Nucleic Acids Res (2009) 1.21
Quantitative time-course profiling of parasite and host cell proteins in the human malaria parasite Plasmodium falciparum. Mol Cell Proteomics (2011) 1.17
PfSET10, a Plasmodium falciparum methyltransferase, maintains the active var gene in a poised state during parasite division. Cell Host Microbe (2012) 1.16
Expression of P. falciparum var genes involves exchange of the histone variant H2A.Z at the promoter. PLoS Pathog (2011) 1.11
Pericentric and centromeric transcription: a perfect balance required. Chromosome Res (2012) 1.08
Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum. BMC Genomics (2014) 1.05
Exonuclease-mediated degradation of nascent RNA silences genes linked to severe malaria. Nature (2014) 0.97
Long noncoding RNAs promote transcriptional poising of inducible genes. PLoS Biol (2013) 0.96
No miRNA were found in Plasmodium and the ones identified in erythrocytes could not be correlated with infection. Malar J (2008) 0.96
Naturally occurring antisense RNA: function and mechanisms of action. Curr Opin Nephrol Hypertens (2009) 0.95
Two long non-coding RNAs generated from subtelomeric regions accumulate in a novel perinuclear compartment in Plasmodium falciparum. Mol Biochem Parasitol (2012) 0.95
Plasmodium falciparum centromeres display a unique epigenetic makeup and cluster prior to and during schizogony. Cell Microbiol (2012) 0.93
A screen for conserved sequences with biased base composition identifies noncoding RNAs in the A-T rich genome of Plasmodium falciparum. Mol Biochem Parasitol (2005) 0.93
Recruitment of PfSET2 by RNA polymerase II to variant antigen encoding loci contributes to antigenic variation in P. falciparum. PLoS Pathog (2014) 0.90
The telomeric transcriptome: from fission yeast to mammals. Int J Biochem Cell Biol (2012) 0.89
Antigenic variation and the generation of diversity in malaria parasites. Curr Opin Microbiol (2012) 0.89
Functional insights into long antisense noncoding RNA Kcnq1ot1 mediated bidirectional silencing. RNA Biol (2008) 0.86
Changes in the transcriptome of the malaria parasite Plasmodium falciparum during the initial phase of transmission from the human to the mosquito. BMC Genomics (2013) 0.86
Deep profiling of the novel intermediate-size noncoding RNAs in intraerythrocytic Plasmodium falciparum. PLoS One (2014) 0.80
Strand-specific RNA-seq applied to malaria samples. Methods Mol Biol (2012) 0.78
In Silico Prediction of Evolutionarily Conserved GC-Rich Elements Associated with Antigenic Proteins of Plasmodium falciparum. Evol Bioinform Online (2011) 0.76