Published in Proc Natl Acad Sci U S A on January 11, 2012
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Quantitative characterization of the transcriptional regulatory network in the yeast cell cycle. Bioinformatics (2004) 1.43
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Systematic identification of yeast cell cycle transcription factors using multiple data sources. BMC Bioinformatics (2008) 1.25
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Prediction of splice sites with dependency graphs and their expanded bayesian networks. Bioinformatics (2004) 1.17
Human adaptive evolution at Myostatin (GDF8), a regulator of muscle growth. Am J Hum Genet (2006) 1.16
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Evolution of the hominoid semenogelin genes, the major proteins of ejaculated semen. J Mol Evol (2003) 1.14
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Effects of GC content and mutational pressure on the lengths of exons and coding sequences. J Mol Evol (2003) 1.13
A new measure of the robustness of biochemical networks. Bioinformatics (2005) 1.13
How strong is the mutagenicity of recombination in mammals? Mol Biol Evol (2004) 1.13
The spatial distribution of cis regulatory elements in yeast promoters and its implications for transcriptional regulation. BMC Genomics (2010) 1.12
Identifying gene regulatory modules of heat shock response in yeast. BMC Genomics (2008) 1.12
Evidence from opsin genes rejects nocturnality in ancestral primates. Proc Natl Acad Sci U S A (2005) 1.11
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A study of the phylogeny of Brassica rapa, B. nigra, Raphanus sativus, and their related genera using noncoding regions of chloroplast DNA. Mol Phylogenet Evol (2002) 1.09
Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data. BMC Bioinformatics (2007) 1.09
The nonsynonymous/synonymous substitution rate ratio versus the radical/conservative replacement rate ratio in the evolution of mammalian genes. Mol Biol Evol (2007) 1.07
Comparison of three methods for estimating rates of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol (2004) 1.07
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Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification. BMC Bioinformatics (2005) 1.05
Evolutionary persistence of functional compensation by duplicate genes in Arabidopsis. Genome Biol Evol (2009) 1.04
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Identification of protein functional surfaces by the concept of a split pocket. Proteins (2009) 1.03
SplitPocket: identification of protein functional surfaces and characterization of their spatial patterns. Nucleic Acids Res (2009) 1.03
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Molecular evolution of bat color vision genes. Mol Biol Evol (2003) 1.02
Method for identifying transcription factor binding sites in yeast. Bioinformatics (2006) 1.02
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Discovering gapped binding sites of yeast transcription factors. Proc Natl Acad Sci U S A (2008) 0.98
DNA polymorphism and selection at the melanocortin-1 receptor gene in normally pigmented southern African individuals. Ann N Y Acad Sci (2003) 0.98
Expansion of hexose transporter genes was associated with the evolution of aerobic fermentation in yeasts. Mol Biol Evol (2010) 0.98
Genome-wide patterns of genetic variation in two domestic chickens. Genome Biol Evol (2013) 0.97
Higher gene duplicabilities for metabolic proteins than for nonmetabolic proteins in yeast and E. coli. J Mol Evol (2004) 0.97
Functional compensation by duplicated genes in mouse. Trends Genet (2009) 0.97
Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. Mol Biol Evol (2010) 0.97
Adverse interactions between micro-RNAs and target genes from different species. Proc Natl Acad Sci U S A (2010) 0.97
The genetic basis of evolutionary change in gene expression levels. Philos Trans R Soc Lond B Biol Sci (2010) 0.97
Inheritance of gene expression level and selective constraints on trans- and cis-regulatory changes in yeast. Mol Biol Evol (2013) 0.96
Roles of trans and cis variation in yeast intraspecies evolution of gene expression. Mol Biol Evol (2009) 0.96
DNA polymorphism in a worldwide sample of human X chromosomes. Mol Biol Evol (2002) 0.96