Published in Plant J on April 07, 2010
Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development. Plant Physiol (2011) 2.36
Positional cloning and characterization reveal the molecular basis for soybean maturity locus E1 that regulates photoperiodic flowering. Proc Natl Acad Sci U S A (2012) 2.11
Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population. Genome Res (2013) 1.72
Genome-wide survey and expression analysis of the plant-specific NAC transcription factor family in soybean during development and dehydration stress. DNA Res (2011) 1.55
Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems. BMC Genomics (2011) 1.52
SNP Discovery through Next-Generation Sequencing and Its Applications. Int J Plant Genomics (2012) 1.46
Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean. Plant Physiol (2011) 1.45
Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays. PLoS One (2013) 1.40
Advances in omics and bioinformatics tools for systems analyses of plant functions. Plant Cell Physiol (2011) 1.28
Genome-wide analysis of the MYB transcription factor superfamily in soybean. BMC Plant Biol (2012) 1.23
Genome-wide expression profiling of soybean two-component system genes in soybean root and shoot tissues under dehydration stress. DNA Res (2011) 1.18
Pericentromeric effects shape the patterns of divergence, retention, and expression of duplicated genes in the paleopolyploid soybean. Plant Cell (2012) 1.08
Integrating omic approaches for abiotic stress tolerance in soybean. Front Plant Sci (2014) 1.07
High level transgenic expression of soybean (Glycine max) GmERF and Gmubi gene promoters isolated by a novel promoter analysis pipeline. BMC Plant Biol (2010) 1.07
Genome organization and characteristics of soybean microRNAs. BMC Genomics (2012) 1.05
Comparative genomic analysis of soybean flowering genes. PLoS One (2012) 1.04
Whole genome co-expression analysis of soybean cytochrome P450 genes identifies nodulation-specific P450 monooxygenases. BMC Plant Biol (2010) 1.04
Identification of soybean purple acid phosphatase genes and their expression responses to phosphorus availability and symbiosis. Ann Bot (2011) 1.04
Quantitative phosphoproteomic analysis of soybean root hairs inoculated with Bradyrhizobium japonicum. Mol Cell Proteomics (2012) 1.03
A C subunit of the plant nuclear factor NF-Y required for rhizobial infection and nodule development affects partner selection in the common bean-Rhizobium etli symbiosis. Plant Cell (2010) 1.02
An integrative approach to genomic introgression mapping. Plant Physiol (2010) 1.01
An RNA-Seq based gene expression atlas of the common bean. BMC Genomics (2014) 1.01
Rapid phosphoproteomic and transcriptomic changes in the rhizobia-legume symbiosis. Mol Cell Proteomics (2012) 1.00
The large soybean (Glycine max) WRKY TF family expanded by segmental duplication events and subsequent divergent selection among subgroups. BMC Plant Biol (2013) 0.99
A Medicago truncatula tobacco retrotransposon insertion mutant collection with defects in nodule development and symbiotic nitrogen fixation. Plant Physiol (2012) 0.98
The auxin response factor transcription factor family in soybean: genome-wide identification and expression analyses during development and water stress. DNA Res (2013) 0.97
Iron: an essential micronutrient for the legume-rhizobium symbiosis. Front Plant Sci (2013) 0.97
Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genome. Genome Biol (2015) 0.97
The rice miniature inverted repeat transposable element mPing is an effective insertional mutagen in soybean. Plant Physiol (2011) 0.97
The Soybean Rhg1 locus for resistance to the soybean cyst nematode Heterodera glycines regulates the expression of a large number of stress- and defense-related genes in degenerating feeding cells. Plant Physiol (2011) 0.96
Identification and expression analysis of cytokinin metabolic genes in soybean under normal and drought conditions in relation to cytokinin levels. PLoS One (2012) 0.96
Late Embryogenesis Abundant (LEA) proteins in legumes. Front Plant Sci (2013) 0.95
Comparative evolution of photosynthetic genes in response to polyploid and nonpolyploid duplication. Plant Physiol (2011) 0.95
Tnt1 retrotransposon mutagenesis: a tool for soybean functional genomics. Plant Physiol (2012) 0.94
Changes in twelve homoeologous genomic regions in soybean following three rounds of polyploidy. Plant Cell (2011) 0.94
Genome-wide identification and evolutionary and expression analyses of MYB-related genes in land plants. DNA Res (2013) 0.94
Transcriptome analysis of salt tolerant common bean (Phaseolus vulgaris L.) under saline conditions. PLoS One (2014) 0.94
Deep Sequencing of the Medicago truncatula Root Transcriptome Reveals a Massive and Early Interaction between Nodulation Factor and Ethylene Signals. Plant Physiol (2015) 0.92
RNA-seq analyses of multiple meristems of soybean: novel and alternative transcripts, evolutionary and functional implications. BMC Plant Biol (2014) 0.92
De novo leaf and root transcriptome analysis identified novel genes involved in steroidal sapogenin biosynthesis in Asparagus racemosus. BMC Genomics (2014) 0.92
Identification and characterization of transcript polymorphisms in soybean lines varying in oil composition and content. BMC Genomics (2014) 0.90
A Sorghum bicolor expression atlas reveals dynamic genotype-specific expression profiles for vegetative tissues of grain, sweet and bioenergy sorghums. BMC Plant Biol (2014) 0.90
A Comparative Epigenomic Analysis of Polyploidy-Derived Genes in Soybean and Common Bean. Plant Physiol (2015) 0.90
Legume genomics: understanding biology through DNA and RNA sequencing. Ann Bot (2014) 0.90
Comprehensive transcriptional profiling of NaHCO3-stressed Tamarix hispida roots reveals networks of responsive genes. Plant Mol Biol (2013) 0.90
LegumeIP: an integrative database for comparative genomics and transcriptomics of model legumes. Nucleic Acids Res (2011) 0.90
Integrated transcriptome catalogue and organ-specific profiling of gene expression in fertile garlic (Allium sativum L.). BMC Genomics (2015) 0.89
Comparative transcriptional profiling provides insights into the evolution and development of the zygomorphic flower of Vicia sativa (Papilionoideae). PLoS One (2013) 0.89
Functional characterization of 14 Pht1 family genes in yeast and their expressions in response to nutrient starvation in soybean. PLoS One (2012) 0.88
Genome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-Seq. BMC Genomics (2013) 0.88
Large scale in-silico identification and characterization of simple sequence repeats (SSRs) from de novo assembled transcriptome of Catharanthus roseus (L.) G. Don. Plant Cell Rep (2014) 0.88
Identification of the conserved and novel miRNAs in Mulberry by high-throughput sequencing. PLoS One (2014) 0.88
SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways. BMC Genomics (2014) 0.88
Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress. BMC Genomics (2014) 0.87
Predicting gene regulatory networks of soybean nodulation from RNA-Seq transcriptome data. BMC Bioinformatics (2013) 0.87
Unleashing the potential of the root hair cell as a single plant cell type model in root systems biology. Front Plant Sci (2013) 0.86
Soybean (Glycine max) expansin gene superfamily origins: segmental and tandem duplication events followed by divergent selection among subfamilies. BMC Plant Biol (2014) 0.86
Alterations in the transcriptome of soybean in response to enhanced somatic embryogenesis promoted by orthologs of Agamous-like15 and Agamous-like18. Plant Physiol (2014) 0.86
Genomic differences between cultivated soybean, G. max and its wild relative G. soja. BMC Genomics (2013) 0.85
Genome-wide analysis of homeobox gene family in legumes: identification, gene duplication and expression profiling. PLoS One (2015) 0.84
Impact of whole-genome and tandem duplications in the expansion and functional diversification of the F-box family in legumes (Fabaceae). PLoS One (2013) 0.84
De novo assembly and characterisation of the field pea transcriptome using RNA-Seq. BMC Genomics (2015) 0.84
Drought Stress Responses in Soybean Roots and Nodules. Front Plant Sci (2016) 0.83
Genome-wide identification of non-coding RNAs interacted with microRNAs in soybean. Front Plant Sci (2014) 0.83
Deletions of the SACPD-C locus elevate seed stearic acid levels but also result in fatty acid and morphological alterations in nitrogen fixing nodules. BMC Plant Biol (2014) 0.82
Early transcriptional response of soybean contrasting accessions to root dehydration. PLoS One (2013) 0.82
14-3-3 proteins SGF14c and SGF14l play critical roles during soybean nodulation. Plant Physiol (2012) 0.82
Genome-based analysis of the transcriptome from mature chickpea root nodules. Front Plant Sci (2014) 0.82
An overall evaluation of the Resistance (R) and Pathogenesis-Related (PR) superfamilies in soybean, as compared with Medicago and Arabidopsis. Genet Mol Biol (2012) 0.82
The Medicago sativa gene index 1.2: a web-accessible gene expression atlas for investigating expression differences between Medicago sativa subspecies. BMC Genomics (2015) 0.82
Recent achievement in gene cloning and functional genomics in soybean. ScientificWorldJournal (2013) 0.81
Diversity of plant methionine sulfoxide reductases B and evolution of a form specific for free methionine sulfoxide. PLoS One (2013) 0.81
Genome-wide analysis and expression profiling of the PIN auxin transporter gene family in soybean (Glycine max). BMC Genomics (2015) 0.80
Genome-wide annotation and characterization of CLAVATA/ESR (CLE) peptide hormones of soybean (Glycine max) and common bean (Phaseolus vulgaris), and their orthologues of Arabidopsis thaliana. J Exp Bot (2015) 0.80
Genomic survey, gene expression analysis and structural modeling suggest diverse roles of DNA methyltransferases in legumes. PLoS One (2014) 0.80
Garlic (Allium sativum L.) fertility: transcriptome and proteome analyses provide insight into flower and pollen development. Front Plant Sci (2015) 0.79
Comprehensive Analysis of the Soybean (Glycine max) GmLAX Auxin Transporter Gene Family. Front Plant Sci (2016) 0.79
Differential expression of trehalose 6-P phosphatase and ascorbate peroxidase transcripts in nodule cortex of Phaseolus vulgaris and regulation of nodule O2 permeability. Planta (2013) 0.79
Validation of endogenous reference genes in Buglossoides arvensis for normalizing RT-qPCR-based gene expression data. Springerplus (2015) 0.79
Comprehensive Comparative Genomic and Transcriptomic Analyses of the Legume Genes Controlling the Nodulation Process. Front Plant Sci (2016) 0.79
Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics (2015) 0.79
Integration of omics approaches to understand oil/protein content during seed development in oilseed crops. Plant Cell Rep (2016) 0.78
Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean. BMC Genomics (2016) 0.78
A novel cis-acting element in the GmERF3 promoter contributes to inducible gene expression in soybean and tobacco after wounding. Plant Cell Rep (2015) 0.78
Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation. J Exp Bot (2017) 0.78
Visual analysis of transcriptome data in the context of anatomical structures and biological networks. Front Plant Sci (2012) 0.78
Soybean (Glycine max L. Merr.) sprouts germinated under red light irradiation induce disease resistance against bacterial rotting disease. PLoS One (2015) 0.78
Identification of Homogentisate Dioxygenase as a Target for Vitamin E Biofortification in Oilseeds. Plant Physiol (2016) 0.77
Fast neutron-induced structural rearrangements at a soybean NAP1 locus result in gnarled trichomes. Theor Appl Genet (2016) 0.77
Characterization of flower-bud transcriptome and development of genic SSR markers in Asian lotus (Nelumbo nucifera Gaertn.). PLoS One (2014) 0.77
A Network Approach of Gene Co-expression in the Zea mays/Aspergillus flavus Pathosystem to Map Host/Pathogen Interaction Pathways. Front Genet (2016) 0.77
Genome-wide analysis and expression profiling suggest diverse roles of GH3 genes during development and abiotic stress responses in legumes. Front Plant Sci (2015) 0.77
GENOSOJA - The Brazilian Soybean Genome Consortium: High throughput omics and beyond. Genet Mol Biol (2012) 0.77
Soybean TIP Gene Family Analysis and Characterization of GmTIP1;5 and GmTIP2;5 Water Transport Activity. Front Plant Sci (2016) 0.77
Cell wall, lignin and fatty acid-related transcriptome in soybean: Achieving gene expression patterns for bioenergy legume. Genet Mol Biol (2012) 0.76
The carbon-nitrogen balance of the nodule and its regulation under elevated carbon dioxide concentration. Biomed Res Int (2014) 0.76
Novel members of the AGAMOUS LIKE 6 subfamily of MIKCC-type MADS-box genes in soybean. BMC Plant Biol (2013) 0.76
Functional implication of β-carotene hydroxylases in soybean nodulation. Plant Physiol (2013) 0.76
Comparative characterization of GmSPX members reveals that GmSPX3 is involved in phosphate homeostasis in soybean. Ann Bot (2014) 0.76
RNA-Seq Analysis of Differential Gene Expression Responding to Different Rhizobium Strains in Soybean (Glycine max) Roots. Front Plant Sci (2016) 0.76
Genome sequence of the palaeopolyploid soybean. Nature (2010) 17.82
Designing and evaluating complex interventions to improve health care. BMJ (2007) 9.78
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. Genome Biol (2008) 4.78
Long-term monitoring shows hepatitis B virus resistance to entecavir in nucleoside-naïve patients is rare through 5 years of therapy. Hepatology (2009) 4.00
Enhanced computer vision with Microsoft Kinect sensor: a review. IEEE Trans Cybern (2013) 3.75
Slug antagonizes p53-mediated apoptosis of hematopoietic progenitors by repressing puma. Cell (2005) 3.73
A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in Arabidopsis. Plant Cell (2008) 3.54
Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia. Science (2007) 3.42
Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 1. Generalized Born. J Chem Theory Comput (2012) 3.40
Ultradeep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing. Cancer Res (2007) 3.40
A gene expression atlas of the model legume Medicago truncatula. Plant J (2008) 3.38
Taking healthcare interventions from trial to practice. BMJ (2010) 3.27
Graph embedding and extensions: a general framework for dimensionality reduction. IEEE Trans Pattern Anal Mach Intell (2007) 3.06
MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs. Genes Dev (2011) 2.66
Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation. Proc Natl Acad Sci U S A (2003) 2.52
Inferring gene regulatory networks from multiple microarray datasets. Bioinformatics (2006) 2.49
B lymphocyte stimulator overexpression in patients with systemic lupus erythematosus: longitudinal observations. Arthritis Rheum (2003) 2.47
Large-scale insertional mutagenesis using the Tnt1 retrotransposon in the model legume Medicago truncatula. Plant J (2008) 2.37
Visualization of nitric oxide in living cells by a copper-based fluorescent probe. Nat Chem Biol (2006) 2.33
Implementing intensive control of blood glucose concentration and blood pressure in type 2 diabetes in England: cost analysis (UKPDS 63). BMJ (2002) 2.24
Local production of B lymphocyte stimulator protein and APRIL in arthritic joints of patients with inflammatory arthritis. Arthritis Rheum (2003) 2.21
Ensemble-based virtual screening reveals potential novel antiviral compounds for avian influenza neuraminidase. J Med Chem (2008) 2.14
Sub-telomere directed gene expression during initiation of invasive aspergillosis. PLoS Pathog (2008) 2.09
Complete transcriptome of the soybean root hair cell, a single-cell model, and its alteration in response to Bradyrhizobium japonicum infection. Plant Physiol (2009) 2.00
Understanding the unique characteristics of suicide in China: national psychological autopsy study. Biomed Environ Sci (2005) 1.90
Management of High-Throughput DNA Sequencing Projects: Alpheus. J Comput Sci Syst Biol (2008) 1.85
Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees. Bioinformatics (2002) 1.81
Interoperability with Moby 1.0--it's better than sharing your toothbrush! Brief Bioinform (2008) 1.80
Microarray analysis of chitin elicitation in Arabidopsis thaliana. Mol Plant Pathol (2002) 1.80
Genome-wide DNA methylation analysis reveals novel epigenetic changes in chronic lymphocytic leukemia. Epigenetics (2012) 1.80
Molecular and chromosomal evidence for allopolyploidy in soybean. Plant Physiol (2009) 1.78
Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. Mol Plant Microbe Interact (2007) 1.77
Epidermal growth factor-like domain 7 protects endothelial cells from hyperoxia-induced cell death. Am J Physiol Lung Cell Mol Physiol (2007) 1.75
Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes. Plant Biotechnol J (2012) 1.75
Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples. Biotechniques (2004) 1.74
Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population. Genome Res (2013) 1.72
Nonlegumes respond to rhizobial Nod factors by suppressing the innate immune response. Science (2013) 1.72
Photoaffinity isolation and identification of proteins in cancer cell extracts that bind to platinum-modified DNA. Chembiochem (2009) 1.71
Global protein function annotation through mining genome-scale data in yeast Saccharomyces cerevisiae. Nucleic Acids Res (2004) 1.71
Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnol J (2011) 1.66
The activation of natural killer cell effector functions by cetuximab-coated, epidermal growth factor receptor positive tumor cells is enhanced by cytokines. Clin Cancer Res (2007) 1.66
Late onset type 1 diabetes. BMJ (2012) 1.64
Extracellular ATP in plants. Visualization, localization, and analysis of physiological significance in growth and signaling. Plant Physiol (2006) 1.64
Multiplex PCR to diagnose bloodstream infections in patients admitted from the emergency department with sepsis. J Clin Microbiol (2009) 1.63
Efficacy of entecavir in chronic hepatitis B patients with mildly elevated alanine aminotransferase and biopsy-proven histological damage. Hepatology (2010) 1.61
Long-term treatment with entecavir induces reversal of advanced fibrosis or cirrhosis in patients with chronic hepatitis B. Clin Gastroenterol Hepatol (2010) 1.60
Molecular evolution of lysin motif-type receptor-like kinases in plants. Plant Physiol (2007) 1.59
Does electronic monitoring influence adherence to medication? Randomized controlled trial of measurement reactivity. Ann Behav Med (2014) 1.58
Terpene biosynthesis in glandular trichomes of hop. Plant Physiol (2008) 1.57
Musite, a tool for global prediction of general and kinase-specific phosphorylation sites. Mol Cell Proteomics (2010) 1.55
Disease progression in hemodynamically stable patients presenting to the emergency department with sepsis. Acad Emerg Med (2010) 1.54
Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps. Genome (2008) 1.53
Genome-wide reprogramming of regulatory networks, transport, cell wall and membrane biogenesis during arbuscular mycorrhizal symbiosis in Lotus japonicus. New Phytol (2009) 1.53
Point-of-care testing for Hb A1c in the management of diabetes: a systematic review and metaanalysis. Clin Chem (2011) 1.53
Comparisons among two fertile and three male-sterile mitochondrial genomes of maize. Genetics (2007) 1.53
Targeting CD37-positive lymphoid malignancies with a novel engineered small modular immunopharmaceutical. Blood (2007) 1.51
Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). Theor Appl Genet (2011) 1.51
Loss-of-function mutations in chitin responsive genes show increased susceptibility to the powdery mildew pathogen Erysiphe cichoracearum. Plant Physiol (2005) 1.51
CUBIC: identification of regulatory binding sites through data clustering. J Bioinform Comput Biol (2003) 1.47
No supernovae associated with two long-duration gamma-ray bursts. Nature (2006) 1.47
Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean. Plant Physiol (2011) 1.45
catena-Poly[[bis(thiocyanato-kappa N)cadmium(II)]-di-mu-thiourea-kappa(4)S:S]. Acta Crystallogr C (2002) 1.45
SNP discovery by high-throughput sequencing in soybean. BMC Genomics (2010) 1.45
ABC of psychological medicine: Functional somatic symptoms and syndromes. BMJ (2002) 1.44
Activation of a mitogen-activated protein kinase pathway in Arabidopsis by chitin. Mol Plant Pathol (2004) 1.44
Identification of a plant receptor for extracellular ATP. Science (2014) 1.44
The Legume Information System (LIS): an integrated information resource for comparative legume biology. Nucleic Acids Res (2005) 1.43
The Arabidopsis AtOPT3 protein functions in metal homeostasis and movement of iron to developing seeds. Plant Physiol (2007) 1.43
Preoperative rosuvastatin protects patients with coronary artery disease undergoing noncardiac surgery. Cardiology (2015) 1.43
MUFOLD: A new solution for protein 3D structure prediction. Proteins (2010) 1.42
Single feature polymorphism discovery in rice. PLoS One (2007) 1.42
SoyDB: a knowledge database of soybean transcription factors. BMC Plant Biol (2010) 1.40
Characterizing loop dynamics and ligand recognition in human- and avian-type influenza neuraminidases via generalized born molecular dynamics and end-point free energy calculations. J Am Chem Soc (2009) 1.40
Prediction of novel miRNAs and associated target genes in Glycine max. BMC Bioinformatics (2010) 1.39
PRIMEGENS-v2: genome-wide primer design for analyzing DNA methylation patterns of CpG islands. Bioinformatics (2008) 1.35
Flavones and flavonols play distinct critical roles during nodulation of Medicago truncatula by Sinorhizobium meliloti. Plant J (2008) 1.35
Computational identification of protein methylation sites through bi-profile Bayes feature extraction. PLoS One (2009) 1.34
BAFF overexpression and accelerated glomerular disease in mice with an incomplete genetic predisposition to systemic lupus erythematosus. Arthritis Rheum (2005) 1.33
Quorum sensing in plant-associated bacteria. Curr Opin Plant Biol (2002) 1.32
Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Res (2011) 1.31
P3DB: a plant protein phosphorylation database. Nucleic Acids Res (2008) 1.31
Legume transcription factor genes: what makes legumes so special? Plant Physiol (2009) 1.30