PubRank

Yinsheng Wang

Author PubWeight™ 138.02‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Oxidized mitochondrial DNA activates the NLRP3 inflammasome during apoptosis. Immunity 2012 5.08
2 Thirdhand tobacco smoke: emerging evidence and arguments for a multidisciplinary research agenda. Environ Health Perspect 2011 3.69
3 5-Hydroxymethylcytosine is strongly depleted in human cancers but its levels do not correlate with IDH1 mutations. Cancer Res 2011 2.36
4 An ultraviolet-radiation-independent pathway to melanoma carcinogenesis in the red hair/fair skin background. Nature 2012 2.35
5 NF-κB inhibition delays DNA damage-induced senescence and aging in mice. J Clin Invest 2012 1.91
6 Efficient and accurate bypass of N2-(1-carboxyethyl)-2'-deoxyguanosine by DinB DNA polymerase in vitro and in vivo. Proc Natl Acad Sci U S A 2008 1.70
7 Statins activate AMP-activated protein kinase in vitro and in vivo. Circulation 2006 1.55
8 Identification and quantification of a guanine-thymine intrastrand cross-link lesion induced by Cu(II)/H2O2/ascorbate. Chem Res Toxicol 2006 1.52
9 Mass spectrometric analysis of high-mobility group proteins and their post-translational modifications in normal and cancerous human breast tissues. J Proteome Res 2007 1.48
10 Quantification of oxidative DNA lesions in tissues of Long-Evans Cinnamon rats by capillary high-performance liquid chromatography-tandem mass spectrometry coupled with stable isotope-dilution method. Anal Chem 2011 1.47
11 High-throughput analysis of the mutagenic and cytotoxic properties of DNA lesions by next-generation sequencing. Nucleic Acids Res 2011 1.43
12 Formation and genotoxicity of a guanine-cytosine intrastrand cross-link lesion in vivo. Nucleic Acids Res 2007 1.38
13 The DNA translocase FANCM/MHF promotes replication traverse of DNA interstrand crosslinks. Mol Cell 2013 1.32
14 The oxidative DNA lesions 8,5'-cyclopurines accumulate with aging in a tissue-specific manner. Aging Cell 2012 1.30
15 Independent generation of the 5-hydroxy-5,6-dihydrothymidin-6-yl radical and its reactivity in dinucleoside monophosphates. J Am Chem Soc 2004 1.24
16 Independent generation of 5-(2'-deoxycytidinyl)methyl radical and the formation of a novel cross-link lesion between 5-methylcytosine and guanine. J Am Chem Soc 2003 1.20
17 LC-MS/MS identification and yeast polymerase eta bypass of a novel gamma-irradiation-induced intrastrand cross-link lesion G[8-5]C. Biochemistry 2004 1.18
18 On the formation and properties of interstrand DNA-DNA cross-links forged by reaction of an abasic site with the opposing guanine residue of 5'-CAp sequences in duplex DNA. J Am Chem Soc 2013 1.17
19 Generation of 5-(2'-deoxycytidyl)methyl radical and the formation of intrastrand cross-link lesions in oligodeoxyribonucleotides. Nucleic Acids Res 2005 1.17
20 Quantification of 5-methylcytosine and 5-hydroxymethylcytosine in genomic DNA from hepatocellular carcinoma tissues by capillary hydrophilic-interaction liquid chromatography/quadrupole TOF mass spectrometry. Clin Chem 2013 1.17
21 A quantitative assay for assessing the effects of DNA lesions on transcription. Nat Chem Biol 2012 1.16
22 Quantitative assessment of Tet-induced oxidation products of 5-methylcytosine in cellular and tissue DNA. Nucleic Acids Res 2013 1.16
23 Tet-mediated formation of 5-hydroxymethylcytosine in RNA. J Am Chem Soc 2014 1.14
24 In vivo formation and in vitro replication of a guanine-thymine intrastrand cross-link lesion. Biochemistry 2007 1.13
25 Chronic epithelial NF-κB activation accelerates APC loss and intestinal tumor initiation through iNOS up-regulation. Proc Natl Acad Sci U S A 2012 1.13
26 Redox reactions of copper complexes formed with different beta-amyloid peptides and their neuropathological [correction of neuropathalogical] relevance. Biochemistry 2007 1.12
27 Formation of intrastrand cross-link products between cytosine and adenine from UV irradiation of d((Br)CA) and duplex DNA containing a 5-bromocytosine. J Am Chem Soc 2005 1.11
28 Mutagenic and cytotoxic properties of 6-thioguanine, S6-methylthioguanine, and guanine-S6-sulfonic acid. J Biol Chem 2008 1.11
29 Quantification of oxidative single-base and intrastrand cross-link lesions in unmethylated and CpG-methylated DNA induced by Fenton-type reagents. Nucleic Acids Res 2007 1.10
30 The roles of DNA polymerases κ and ι in the error-free bypass of N2-carboxyalkyl-2'-deoxyguanosine lesions in mammalian cells. J Biol Chem 2011 1.09
31 High mobility group proteins and their post-translational modifications. Biochim Biophys Acta 2008 1.09
32 Recognition and incision of oxidative intrastrand cross-link lesions by UvrABC nuclease. Biochemistry 2006 1.07
33 Interstrand DNA-DNA cross-link formation between adenine residues and abasic sites in duplex DNA. J Am Chem Soc 2014 1.04
34 Efficient formation of the tandem thymine glycol/8-oxo-7,8-dihydroguanine lesion in isolated DNA and the mutagenic and cytotoxic properties of the tandem lesions in Escherichia coli cells. Chem Res Toxicol 2010 1.04
35 Translesion synthesis of 8,5'-cyclopurine-2'-deoxynucleosides by DNA polymerases η, ι, and ζ. J Biol Chem 2013 1.03
36 6-Thioguanine and S⁶-methylthioguanine are mutagenic in human cells. ACS Chem Biol 2010 1.01
37 A targeted quantitative proteomics strategy for global kinome profiling of cancer cells and tissues. Mol Cell Proteomics 2014 1.00
38 Thermodynamic and in vitro replication studies of an intrastrand G[8-5]C cross-link lesion. Biochemistry 2005 1.00
39 Identification of novel α-n-methylation of CENP-B that regulates its binding to the centromeric DNA. J Proteome Res 2013 0.98
40 Stereospecific synthesis and characterization of oligodeoxyribonucleotides containing an N2-(1-carboxyethyl)-2'-deoxyguanosine. J Am Chem Soc 2007 0.98
41 Selective cavitand-mediated endocytosis of targeted imaging agents into live cells. J Am Chem Soc 2013 0.97
42 A mass spectrometric study on the in vitro methylation of HMGA1a and HMGA1b proteins by PRMTs: methylation specificity, the effect of binding to AT-rich duplex DNA, and the effect of C-terminal phosphorylation. Biochemistry 2007 0.97
43 LC-MS/MS for the detection of DNA interstrand cross-links formed by 8-methoxypsoralen and UVA irradiation in human cells. Anal Chem 2008 0.97
44 Facile formation of an intrastrand cross-link lesion between cytosine and guanine upon pyrex-filtered UV light irradiation of d((Br)CG) and duplex DNA containing 5-bromocytosine. J Am Chem Soc 2004 0.97
45 Quantitative analysis of DNA interstrand cross-links and monoadducts formed in human cells induced by psoralens and UVA irradiation. Anal Chem 2008 0.97
46 Repair of mitomycin C mono- and interstrand cross-linked DNA adducts by UvrABC: a new model. Nucleic Acids Res 2010 0.96
47 Mass spectrometric studies on epigenetic interaction networks in cell differentiation. J Biol Chem 2011 0.96
48 Graphene as a novel matrix for the analysis of small molecules by MALDI-TOF MS. Anal Chem 2010 0.96
49 The reactivity of the 5-hydroxy-5,6-dihydrothymidin-6-yl radical in oligodeoxyribonucleotides. Chem Res Toxicol 2005 0.96
50 Ternary complexes of iron, amyloid-beta, and nitrilotriacetic acid: binding affinities, redox properties, and relevance to iron-induced oxidative stress in Alzheimer's disease. Biochemistry 2009 0.96
51 Collisionally activated dissociation of protonated 2'-deoxycytidine, 2'-deoxyuridine, and their oxidatively damaged derivatives. J Am Soc Mass Spectrom 2006 0.95
52 Derivatization with Girard reagent T combined with LC-MS/MS for the sensitive detection of 5-formyl-2'-deoxyuridine in cellular DNA. Anal Chem 2007 0.95
53 Beta-elimination coupled with tandem mass spectrometry for the identification of in vivo and in vitro phosphorylation sites in maize dehydrin DHN1 protein. Biochemistry 2004 0.95
54 5-Aza-2'-deoxycytidine induced growth inhibition of leukemia cells through modulating endogenous cholesterol biosynthesis. Mol Cell Proteomics 2012 0.94
55 In vitro replication and repair studies of tandem lesions containing neighboring thymidine glycol and 8-oxo-7,8-dihydro-2'-deoxyguanosine. Chem Res Toxicol 2009 0.94
56 Quantitative proteomic analysis reveals the perturbation of multiple cellular pathways in HL-60 cells induced by arsenite treatment. J Proteome Res 2010 0.93
57 6-Thioguanine reactivates epigenetically silenced genes in acute lymphoblastic leukemia cells by facilitating proteasome-mediated degradation of DNMT1. Cancer Res 2011 0.93
58 6-Thioguanine perturbs cytosine methylation at the CpG dinucleotide site by DNA methyltransferases in vitro and acts as a DNA demethylating agent in vivo. Biochemistry 2009 0.93
59 Chemical synthesis of oligodeoxyribonucleotides containing N3- and O4-carboxymethylthymidine and their formation in DNA. Nucleic Acids Res 2008 0.93
60 In vitro replication and thermodynamic studies of methylation and oxidation modifications of 6-thioguanine. Nucleic Acids Res 2007 0.93
61 Statin treatment increases lifespan and improves cardiac health in Drosophila by decreasing specific protein prenylation. PLoS One 2012 0.93
62 JBP1 and JBP2 proteins are Fe2+/2-oxoglutarate-dependent dioxygenases regulating hydroxylation of thymidine residues in trypanosome DNA. J Biol Chem 2012 0.93
63 Structure elucidation of DNA interstrand cross-link by a combination of nuclease P1 digestion with mass spectrometry. Anal Chem 2003 0.92
64 Acetylation and phosphorylation of high-mobility group A1 proteins in PC-3 human tumor cells. Biochemistry 2006 0.91
65 Further studies on the fragmentation of protonated ions of peptides containing aspartic acid, glutamic acid, cysteine sulfinic acid, and cysteine sulfonic acid. Rapid Commun Mass Spectrom 2005 0.91
66 Methyl group migration during the fragmentation of singly charged ions of trimethyllysine-containing peptides: precaution of using MS/MS of singly charged ions for interrogating peptide methylation. J Am Soc Mass Spectrom 2009 0.91
67 Endogenous formation and repair of oxidatively induced G[8-5 m]T intrastrand cross-link lesion. Nucleic Acids Res 2012 0.91
68 Synthesis and characterization of oligodeoxyribonucleotides containing a site-specifically incorporated N6-carboxymethyl-2'-deoxyadenosine or N4-carboxymethyl-2'-deoxycytidine. Nucleic Acids Res 2010 0.91
69 Probing adenosine nucleotide-binding proteins with an affinity-labeled nucleotide probe and mass spectrometry. Anal Chem 2007 0.91
70 Proteome-wide discovery and characterizations of nucleotide-binding proteins with affinity-labeled chemical probes. Anal Chem 2013 0.90
71 In-vitro replication studies on O(2)-methylthymidine and O(4)-methylthymidine. Chem Res Toxicol 2012 0.90
72 Widespread existence of cytosine methylation in yeast DNA measured by gas chromatography/mass spectrometry. Anal Chem 2012 0.90
73 Tandem mass spectrometry for the examination of the posttranslational modifications of high-mobility group A1 proteins: symmetric and asymmetric dimethylation of Arg25 in HMGA1a protein. Biochemistry 2005 0.90
74 Identification and characterization of a novel cross-link lesion in d(CpC) upon 365-nm irradiation in the presence of 2-methyl-1,4-naphthoquinone. Nucleic Acids Res 2003 0.90
75 In vitro replication studies of carboxymethylated DNA lesions with Saccharomyces cerevisiae polymerase η. Biochemistry 2011 0.90
76 Replication across regioisomeric ethylated thymidine lesions by purified DNA polymerases. Chem Res Toxicol 2013 0.89
77 LC-MS/MS coupled with stable isotope dilution method for the quantification of 6-thioguanine and S(6)-methylthioguanine in genomic DNA of human cancer cells treated with 6-thioguanine. Anal Chem 2010 0.89
78 Synthesis and thermodynamic studies of oligodeoxyribonucleotides containing tandem lesions of thymidine glycol and 8-oxo-2'-deoxyguanosine. Chem Res Toxicol 2006 0.89
79 Quantitative proteomic analysis revealed lovastatin-induced perturbation of cellular pathways in HL-60 cells. J Proteome Res 2011 0.89
80 HMG modifications and nuclear function. Biochim Biophys Acta 2010 0.88
81 A quantitative study on the in vitro and in vivo acetylation of high mobility group A1 proteins. J Am Soc Mass Spectrom 2007 0.88
82 Sequence-dependent formation of intrastrand crosslink products from the UVB irradiation of duplex DNA containing a 5-bromo-2'-deoxyuridine or 5-bromo-2'-deoxycytidine. Nucleic Acids Res 2006 0.88
83 Effects of 6-thioguanine and S6-methylthioguanine on transcription in vitro and in human cells. J Biol Chem 2012 0.88
84 Ca2+/calmodulin-dependent protein kinase kinase β phosphorylation of Sirtuin 1 in endothelium is atheroprotective. Proc Natl Acad Sci U S A 2013 0.88
85 Redox-dependent formation of disulfide bonds in human replication protein A. Rapid Commun Mass Spectrom 2007 0.87
86 A method to determine the ionization efficiency change of peptides caused by phosphorylation. J Am Soc Mass Spectrom 2007 0.86
87 Isotope-coded ATP probe for quantitative affinity profiling of ATP-binding proteins. Anal Chem 2013 0.86
88 A density functional theory study on the kinetics and thermodynamics of N-glycosidic bond cleavage in 5-substituted 2'-deoxycytidines. Biochemistry 2012 0.86
89 Beta-arrestin inhibits CAMKKbeta-dependent AMPK activation downstream of protease-activated-receptor-2. BMC Biochem 2010 0.86
90 Isolation and characterization of a novel cross-link lesion in d(CpC) induced by one-electron photooxidation. Photochem Photobiol 2004 0.86
91 Site-selective modifications of arginine residues in human hemoglobin induced by methylglyoxal. Biochemistry 2006 0.86
92 Arsenite binds to the RING finger domains of RNF20-RNF40 histone E3 ubiquitin ligase and inhibits DNA double-strand break repair. J Am Chem Soc 2014 0.85
93 Quantitative analysis of surface plasma membrane proteins of primary and metastatic melanoma cells. J Proteome Res 2008 0.85
94 Exploring DNA-binding proteins with in vivo chemical cross-linking and mass spectrometry. J Proteome Res 2009 0.85
95 Quantitative proteomic analysis reveals the perturbation of multiple cellular pathways in jurkat-T cells induced by doxorubicin. J Proteome Res 2010 0.85
96 Homeodomain-interacting protein kinase-2 (HIPK2) phosphorylates HMGA1a at Ser-35, Thr-52, and Thr-77 and modulates its DNA binding affinity. J Proteome Res 2007 0.84
97 Mapping of lysine methylation and acetylation in core histones of Neurospora crassa. Biochemistry 2010 0.84
98 Tandem mass spectrometry for the determination of the sites of DNA interstrand cross-link. J Am Soc Mass Spectrom 2004 0.84
99 6-thioguanine induces mitochondrial dysfunction and oxidative DNA damage in acute lymphoblastic leukemia cells. Mol Cell Proteomics 2013 0.84
100 The oxidation of yeast alcohol dehydrogenase-1 by hydrogen peroxide in vitro. J Proteome Res 2007 0.84
101 Effects of Tet-induced oxidation products of 5-methylcytosine on Dnmt1- and DNMT3a-mediated cytosine methylation. Mol Biosyst 2014 0.83
102 Mutagenic and cytotoxic properties of oxidation products of 5-methylcytosine revealed by next-generation sequencing. PLoS One 2013 0.83
103 Efficient analysis of non-polar environmental contaminants by MALDI-TOF MS with graphene as matrix. J Am Soc Mass Spectrom 2011 0.83
104 Quantification of N2-carboxymethyl-2'-deoxyguanosine in calf thymus DNA and cultured human kidney epithelial cells by capillary high-performance liquid chromatography-tandem mass spectrometry coupled with stable isotope dilution method. Chem Res Toxicol 2010 0.83
105 Simultaneous Quantification of Methylated Cytidine and Adenosine in Cellular and Tissue RNA by Nano-Flow Liquid Chromatography-Tandem Mass Spectrometry Coupled with the Stable Isotope-Dilution Method. Anal Chem 2015 0.82
106 Profiling global kinome signatures of the radioresistant MCF-7/C6 breast cancer cells using MRM-based targeted proteomics. J Proteome Res 2014 0.82
107 Induction of 8,5'-cyclo-2'-deoxyadenosine and 8,5'-cyclo-2'-deoxyguanosine in isolated DNA by Fenton-type reagents. Chem Res Toxicol 2013 0.82
108 Cyclophosphamide perturbs cytosine methylation in Jurkat-T cells through LSD1-mediated stabilization of DNMT1 protein. Chem Res Toxicol 2011 0.82
109 Epimeric 2-deoxyribose lesions: Products from the improper chemical repair of 2-deoxyribose radicals. Chem Res Toxicol 2014 0.82
110 Accurate and efficient bypass of 8,5'-cyclopurine-2'-deoxynucleosides by human and yeast DNA polymerase η. Chem Res Toxicol 2012 0.81
111 A quantitative mass spectrometry-based approach for assessing the repair of 8-methoxypsoralen-induced DNA interstrand cross-links and monoadducts in mammalian cells. Anal Chem 2013 0.80
112 UVB-Induced formation of intrastrand cross-link products of DNA in MCF-7 cells treated with 5-bromo-2'-deoxyuridine. Biochemistry 2007 0.80
113 Cd²⁺-induced alteration of the global proteome of human skin fibroblast cells. J Proteome Res 2014 0.80
114 Quantitative mass spectrometry-based analysis of β-D-glucosyl-5-hydroxymethyluracil in genomic DNA of Trypanosoma brucei. J Am Soc Mass Spectrom 2014 0.79
115 Fragmentation of the deprotonated ions of peptides containing cysteine, cysteine sulfinic acid, cysteine sulfonic acid, aspartic acid, and glutamic acid. Rapid Commun Mass Spectrom 2006 0.79
116 Kinetics of deamination and Cu(II)/H2O2/Ascorbate-induced formation of 5-methylcytosine glycol at CpG sites in duplex DNA. Nucleic Acids Res 2009 0.79
117 Uptake of estradiol from sediment by hornyhead turbot (Pleuronichthys verticalis) and effects on oxidative DNA damage in male gonads. Mar Environ Res 2008 0.79
118 Hexavalent chromium-induced alteration of proteomic landscape in human skin fibroblast cells. J Proteome Res 2013 0.79
119 Effects of tet-induced oxidation products of 5-methylcytosine on DNA replication in mammalian cells. Chem Res Toxicol 2014 0.78
120 Nuclease digestion and mass spectrometric characterization of oligodeoxyribonucleotides containing 1,2-GpG, 1,2-ApG, and 1,3-GpXpG cisplatin intrastrand cross-links. Clin Chim Acta 2012 0.78
121 Fragmentation of electrospray-produced deprotonated ions of oligodeoxyribonucleotides containing an alkylated or oxidized thymidine. J Am Soc Mass Spectrom 2014 0.78
122 Occurrence, Biological Consequences, and Human Health Relevance of Oxidative Stress-Induced DNA Damage. Chem Res Toxicol 2016 0.78
123 Identification of novel in vivo phosphorylation sites in high mobility group N1 protein from the MCF-7 human breast cancer cells. Biochemistry 2004 0.77
124 Facile photocyclization chemistry of 5-phenylthio-2'-deoxyuridine in duplex DNA. Org Lett 2006 0.77
125 Application of adenosine triphosphate affinity probe and scheduled multiple-reaction monitoring analysis for profiling global kinome in human cells in response to arsenite treatment. Anal Chem 2014 0.77
126 Global proteome quantification for discovering imatinib-induced perturbation of multiple biological pathways in K562 human chronic myeloid leukemia cells. J Proteome Res 2010 0.77
127 Site-specific effects of 17beta-estradiol in hornyhead turbot (Pleuronichthys verticalis) collected from a wastewater outfall and reference location. Environ Res 2009 0.77
128 Quantitative proteomic analysis revealed N'-nitrosonornicotine-induced down-regulation of nonmuscle myosin II and reduced cell migration in cultured human skin fibroblast cells. J Proteome Res 2013 0.77
129 Differentiation of 2'-O- and 3'-O-methylated ribonucleosides by tandem mass spectrometry. J Am Soc Mass Spectrom 2006 0.77
130 Arsenite Binds to the RING Finger Domain of FANCL E3 Ubiquitin Ligase and Inhibits DNA Interstrand Cross-link Repair. ACS Chem Biol 2017 0.77
131 Conformation-dependent formation of the G[8-5]U intrastrand cross-link in 5-bromouracil-containing G-quadruplex DNA induced by UVA irradiation. Biochemistry 2010 0.76
132 The photochemistry of 5-BrdCpdC, dCp5-BrdCpdA, and dCp5-BrdCdT in aqueous solution. Nucleosides Nucleotides Nucleic Acids 2006 0.76
133 Photoswitchable formation of a DNA interstrand cross-link by a coumarin-modified nucleotide. Angew Chem Int Ed Engl 2014 0.76
134 Quantitative proteomic analysis revealed 4-(methylnitrosamino)-1-(3-pyridinyl)-1-butanone-induced up-regulation of 20S proteasome in cultured human fibroblast cells. J Proteome Res 2012 0.75
135 Fragmentation of isomeric intrastrand crosslink lesions of DNA in an ion-trap mass spectrometer. J Am Soc Mass Spectrom 2008 0.75
136 Comprehensive characterization of (S)GTP-binding proteins by orthogonal quantitative (S)GTP-affinity profiling and (S)GTP/GTP competition assays. Anal Chem 2014 0.75
137 Effects of 17beta-estradiol, and its metabolite, 4-hydroxyestradiol on fertilization, embryo development and oxidative DNA damage in sand dollar (Dendraster excentricus) sperm. Sci Total Environ 2009 0.75
138 Phosphorylation of human high mobility group N1 protein by protein kinase CK2. Biochem Biophys Res Commun 2006 0.75
139 Mapping Post-translational Modifications of Histones H2A, H2B and H4 in Schizosaccharomyces pombe. Int J Mass Spectrom 2011 0.75
140 Analytical methods in toxicology. Anal Chem 2014 0.75
141 Chemical Analysis of DNA Damage. Anal Chem 2017 0.75
142 Detection and discrimination of DNA adducts differing in size, regiochemistry and functional group by nanopore sequencing. Chem Res Toxicol 2020 0.75