Published in PLoS One on February 14, 2012
MicroRNA-3148 modulates allelic expression of toll-like receptor 7 variant associated with systemic lupus erythematosus. PLoS Genet (2013) 0.99
miRNA-mRNA correlation-network modules in human prostate cancer and the differences between primary and metastatic tumor subtypes. PLoS One (2012) 0.99
Single Nucleotide Polymorphisms Associated with MicroRNA Regulation. Biomolecules (2013) 0.87
Integrative genomics and transcriptomics analysis of human embryonic and induced pluripotent stem cells. BioData Min (2014) 0.81
Why does melanoma metastasize into the brain? Genes with pleiotropic effects might be the key. Front Genet (2013) 0.79
Inferring polymorphism-induced regulatory gene networks active in human lymphocyte cell lines by weighted linear mixed model analysis of multiple RNA-Seq datasets. PLoS One (2013) 0.76
Altered Gene Expression Associated with microRNA Binding Site Polymorphisms. PLoS One (2015) 0.76
Single nucleotide polymorphisms in the 3'UTR of VPAC-1 cooperate in modulating gene expression and impact differently on the interaction with miR525-5p. PLoS One (2014) 0.75
The modularity and dynamicity of miRNA-mRNA interactions in high-grade serous ovarian carcinomas and the prognostic implication. Comput Biol Chem (2016) 0.75
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Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science (2007) 23.38
Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium. Am J Hum Genet (2003) 21.52
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Understanding mechanisms underlying human gene expression variation with RNA sequencing. Nature (2010) 16.86
The microRNA.org resource: targets and expression. Nucleic Acids Res (2007) 16.26
Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution. Cell (2005) 15.38
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Transcriptome genetics using second generation sequencing in a Caucasian population. Nature (2010) 14.85
HAPLO: a program using the EM algorithm to estimate the frequencies of multi-site haplotypes. J Hered (1995) 13.52
A genome-wide map of conserved microRNA targets in C. elegans. Curr Biol (2006) 10.14
The role of microRNA genes in papillary thyroid carcinoma. Proc Natl Acad Sci U S A (2005) 8.60
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miR2Disease: a manually curated database for microRNA deregulation in human disease. Nucleic Acids Res (2008) 6.30
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MicroRNA target site polymorphisms and human disease. Trends Genet (2008) 5.32
Candidate causal regulatory effects by integration of expression QTLs with complex trait genetic associations. PLoS Genet (2010) 4.95
Human polymorphism at microRNAs and microRNA target sites. Proc Natl Acad Sci U S A (2007) 4.87
A genome-wide approach to identify genetic variants that contribute to etoposide-induced cytotoxicity. Proc Natl Acad Sci U S A (2007) 4.35
Variation in the miRNA-433 binding site of FGF20 confers risk for Parkinson disease by overexpression of alpha-synuclein. Am J Hum Genet (2008) 3.27
A miR-24 microRNA binding-site polymorphism in dihydrofolate reductase gene leads to methotrexate resistance. Proc Natl Acad Sci U S A (2007) 3.15
Common polymorphic transcript variation in human disease. Genome Res (2009) 2.35
Worldwide population differentiation at disease-associated SNPs. BMC Med Genomics (2008) 2.32
PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits. Nucleic Acids Res (2006) 1.96
Identification of common genetic variants that account for transcript isoform variation between human populations. Hum Genet (2008) 1.96
Statistical independence of the colocalized association signals for type 1 diabetes and RPS26 gene expression on chromosome 12q13. Biostatistics (2008) 1.72
Human microRNA oncogenes and tumor suppressors show significantly different biological patterns: from functions to targets. PLoS One (2010) 1.59
TargetSpy: a supervised machine learning approach for microRNA target prediction. BMC Bioinformatics (2010) 1.43
Allelic imbalance sequencing reveals that single-nucleotide polymorphisms frequently alter microRNA-directed repression. Nat Biotechnol (2009) 1.39
Genome-wide transcriptional profiling reveals microRNA-correlated genes and biological processes in human lymphoblastoid cell lines. PLoS One (2009) 1.35
Exprtarget: an integrative approach to predicting human microRNA targets. PLoS One (2010) 1.31
A case-control association study of the 12 single-nucleotide polymorphisms implicated in Parkinson disease by a recent genome scan. Am J Hum Genet (2006) 1.26
Identification and characterization of a novel human type II diacylglycerol kinase, DGK kappa. J Biol Chem (2005) 1.25
Functional genetic variation of human miRNAs and phenotypic consequences. Mamm Genome (2008) 1.20
Genome-wide scan for signatures of human population differentiation and their relationship with natural selection, functional pathways and diseases. PLoS One (2009) 1.14
Distribution and effects of nonsense polymorphisms in human genes. PLoS One (2008) 0.99
Association mapping and marker-assisted selection of the lettuce dieback resistance gene Tvr1. BMC Plant Biol (2009) 0.95
A genomics-informed, SNP association study reveals FBLN1 and FABP4 as contributing to resistance to fleece rot in Australian Merino sheep. BMC Vet Res (2010) 0.88
SNPs discovery and CAPS marker conversion in soybean. Mol Biol Rep (2010) 0.86
Accurate multiplex polony sequencing of an evolved bacterial genome. Science (2005) 20.91
Multiplex amplification of large sets of human exons. Nat Methods (2007) 15.11
Interrogating a high-density SNP map for signatures of natural selection. Genome Res (2002) 10.33
Somatic coding mutations in human induced pluripotent stem cells. Nature (2011) 9.50
Increased methylation variation in epigenetic domains across cancer types. Nat Genet (2011) 8.92
Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming. Nat Biotechnol (2009) 7.59
Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing. Science (2009) 6.96
Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells. Mol Cell (2011) 4.89
Distribution of recombination crossovers and the origin of haplotype blocks: the interplay of population history, recombination, and mutation. Am J Hum Genet (2002) 4.29
Human oocytes reprogram somatic cells to a pluripotent state. Nature (2011) 4.03
Whole-genome sequencing in autism identifies hot spots for de novo germline mutation. Cell (2012) 4.03
A public resource facilitating clinical use of genomes. Proc Natl Acad Sci U S A (2012) 3.72
Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors. Proc Natl Acad Sci U S A (2006) 3.71
Recapitulation of premature ageing with iPSCs from Hutchinson-Gilford progeria syndrome. Nature (2011) 3.56
Targeted gene correction of laminopathy-associated LMNA mutations in patient-specific iPSCs. Cell Stem Cell (2011) 3.32
Targeting of GFP to newborn rods by Nrl promoter and temporal expression profiling of flow-sorted photoreceptors. Proc Natl Acad Sci U S A (2006) 3.27
Neuronal activity modifies the DNA methylation landscape in the adult brain. Nat Neurosci (2011) 3.27
Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome. Genome Res (2010) 3.17
Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics. Cell (2013) 3.09
Epstein-Barr virus latent membrane protein 1 induces cellular MicroRNA miR-146a, a modulator of lymphocyte signaling pathways. J Virol (2007) 2.88
Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health. Genome Res (2008) 2.83
A robust approach to identifying tissue-specific gene expression regulatory variants using personalized human induced pluripotent stem cells. PLoS Genet (2009) 2.78
Identification of cross-linked peptides from complex samples. Nat Methods (2012) 2.70
MicroRNA-155 is an Epstein-Barr virus-induced gene that modulates Epstein-Barr virus-regulated gene expression pathways. J Virol (2008) 2.45
Genetic correction and analysis of induced pluripotent stem cells from a patient with gyrate atrophy. Proc Natl Acad Sci U S A (2011) 2.41
RNA truncation by premature polyadenylation attenuates human mobile element activity. Nat Genet (2003) 2.40
Multiplex padlock targeted sequencing reveals human hypermutable CpG variations. Genome Res (2009) 2.38
Optimal timing of inner cell mass isolation increases the efficiency of human embryonic stem cell derivation and allows generation of sibling cell lines. Cell Stem Cell (2009) 2.31
The metabolome of induced pluripotent stem cells reveals metabolic changes occurring in somatic cell reprogramming. Cell Res (2011) 2.30
Cse4 is part of an octameric nucleosome in budding yeast. Mol Cell (2009) 2.23
A novel medium access control protocol with low delay and traffic adaptivity for wireless body area networks. J Med Syst (2011) 2.17
Decoupling suspension controller based on magnetic flux feedback. ScientificWorldJournal (2013) 2.03
Tet1 controls meiosis by regulating meiotic gene expression. Nature (2012) 2.01
Quantifying the Waddington landscape and biological paths for development and differentiation. Proc Natl Acad Sci U S A (2011) 2.00
Evolutionary history and adaptation from high-coverage whole-genome sequences of diverse African hunter-gatherers. Cell (2012) 2.00
LINE-1 RNA splicing and influences on mammalian gene expression. Nucleic Acids Res (2006) 1.94
The effect of single nucleotide polymorphism identification strategies on estimates of linkage disequilibrium. Mol Biol Evol (2003) 1.93
Stem cell aging is controlled both intrinsically and extrinsically in the Drosophila ovary. Cell Stem Cell (2007) 1.87
Identification of a specific reprogramming-associated epigenetic signature in human induced pluripotent stem cells. Proc Natl Acad Sci U S A (2012) 1.69
Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells. Nat Biotechnol (2013) 1.69
Epstein-Barr virus growth/latency III program alters cellular microRNA expression. Virology (2008) 1.63
Somatic expression of LINE-1 elements in human tissues. Nucleic Acids Res (2010) 1.61
A systematic review of matrix metalloproteinase 9 as a biomarker of survival in patients with osteosarcoma. Tumour Biol (2014) 1.58
Human multipotent stromal cells from bone marrow and microRNA: regulation of differentiation and leukemia inhibitory factor expression. Proc Natl Acad Sci U S A (2008) 1.54
SAMMate: a GUI tool for processing short read alignments in SAM/BAM format. Source Code Biol Med (2011) 1.47
Expression of caveolin-1 induces premature cellular senescence in primary cultures of murine fibroblasts. Mol Biol Cell (2002) 1.45
Differences in gastric carcinoma microenvironment stratify according to EBV infection intensity: implications for possible immune adjuvant therapy. PLoS Pathog (2013) 1.43
Transcriptome and targetome analysis in MIR155 expressing cells using RNA-seq. RNA (2010) 1.39
Library-free methylation sequencing with bisulfite padlock probes. Nat Methods (2012) 1.37
Parallel PWMs based fully digital transmitter with wide carrier frequency range. ScientificWorldJournal (2013) 1.34
Dynamics of 5-methylcytosine and 5-hydroxymethylcytosine during germ cell reprogramming. Cell Res (2013) 1.30
Whole-genome sequencing of the Akata and Mutu Epstein-Barr virus strains. J Virol (2012) 1.26
Rapid identification of heterozygous mutations in Drosophila melanogaster using genomic capture sequencing. Genome Res (2010) 1.26
Opioid prescribing in emergency departments: the prevalence of potentially inappropriate prescribing and misuse. Med Care (2013) 1.25
MicroRNA miR-155 inhibits bone morphogenetic protein (BMP) signaling and BMP-mediated Epstein-Barr virus reactivation. J Virol (2010) 1.23
Adenovirus-mediated Wnt10b overexpression induces hair follicle regeneration. J Invest Dermatol (2012) 1.21
Kinetic paths, time scale, and underlying landscapes: a path integral framework to study global natures of nonequilibrium systems and networks. J Chem Phys (2010) 1.18
8-Hydroxy-2'-deoxyguanosine (8-OH-dG) as a potential survival biomarker in patients with nonsmall-cell lung cancer. Cancer (2007) 1.16
Differential regulation of microRNA-146a and microRNA-146b-5p in human retinal pigment epithelial cells by interleukin-1β, tumor necrosis factor-α, and interferon-γ. Mol Vis (2013) 1.16
Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing. Nucleic Acids Res (2011) 1.15
Quantitative and qualitative RNA-Seq-based evaluation of Epstein-Barr virus transcription in type I latency Burkitt's lymphoma cells. J Virol (2010) 1.15
Induction of long intergenic non-coding RNA HOTAIR in lung cancer cells by type I collagen. J Hematol Oncol (2013) 1.15
Detection of murine leukemia virus in the Epstein-Barr virus-positive human B-cell line JY, using a computational RNA-Seq-based exogenous agent detection pipeline, PARSES. J Virol (2012) 1.14
Identification of piRNAs in Hela cells by massive parallel sequencing. BMB Rep (2010) 1.14
Whole-exome sequencing identifies ALMS1, IQCB1, CNGA3, and MYO7A mutations in patients with Leber congenital amaurosis. Hum Mutat (2011) 1.13
Chronic exposure to paclitaxel diminishes phosphoinositide signaling by calpain-mediated neuronal calcium sensor-1 degradation. Proc Natl Acad Sci U S A (2007) 1.13
Linear stapled esophagogastrostomy is more effective than hand-sewn or circular stapler in prevention of anastomotic stricture: a comparative clinical study. J Gastrointest Surg (2011) 1.13
Analysis of protein-coding mutations in hiPSCs and their possible role during somatic cell reprogramming. Nat Commun (2013) 1.12
Shared protein components of SINE RNPs. J Mol Biol (2002) 1.09
In vitro antioxidant activity of acetylated and benzoylated derivatives of polysaccharide extracted from Ulva pertusa (Chlorophyta). Bioorg Med Chem Lett (2006) 1.08
Differential expression of the miR-200 family microRNAs in epithelial and B cells and regulation of Epstein-Barr virus reactivation by the miR-200 family member miR-429. J Virol (2010) 1.08
Chromogranin B regulates calcium signaling, nuclear factor kappaB activity, and brain natriuretic peptide production in cardiomyocytes. Circ Res (2008) 1.08
Rifamycin antibiotic resistance by ADP-ribosylation: Structure and diversity of Arr. Proc Natl Acad Sci U S A (2008) 1.08
siRNAs against the Epstein Barr virus latency replication factor, EBNA1, inhibit its function and growth of EBV-dependent tumor cells. Virology (2005) 1.07
Structure and function of sedoheptulose-7-phosphate isomerase, a critical enzyme for lipopolysaccharide biosynthesis and a target for antibiotic adjuvants. J Biol Chem (2007) 1.07
Cytogenetic analysis of human bone marrow-derived mesenchymal stem cells passaged in vitro. Cell Biol Int (2006) 1.06
Identification of new viral genes and transcript isoforms during Epstein-Barr virus reactivation using RNA-Seq. J Virol (2011) 1.06
Piwil2 suppresses p53 by inducing phosphorylation of signal transducer and activator of transcription 3 in tumor cells. PLoS One (2012) 1.04
Chromatin signature of widespread monoallelic expression. Elife (2013) 1.03
Naringenin and hesperetin, two flavonoids derived from Citrus aurantium up-regulate transcription of adiponectin. Phytother Res (2008) 1.02
Inhibition of MSP-RON signaling pathway in cancer cells by a novel soluble form of RON comprising the entire sema sequence. Int J Oncol (2010) 1.01
The presenilin-1 ΔE9 mutation results in reduced γ-secretase activity, but not total loss of PS1 function, in isogenic human stem cells. Cell Rep (2013) 1.00
Green synthesis of silver nanoparticles by Chrysanthemum morifolium Ramat. extract and their application in clinical ultrasound gel. Int J Nanomedicine (2013) 0.99
Down-regulation of DNA polymerases kappa, eta, iota, and zeta in human lung, stomach, and colorectal cancers. Cancer Lett (2005) 0.99
miRNA-mRNA correlation-network modules in human prostate cancer and the differences between primary and metastatic tumor subtypes. PLoS One (2012) 0.99
The potential and flux landscape theory of evolution. J Chem Phys (2012) 0.99
Prescription practices involving opioid analgesics among Americans with Medicaid, 2010. J Health Care Poor Underserved (2015) 0.98
Finding the needles in the metagenome haystack. Microb Ecol (2007) 0.98
1,3-Bis[4-(meth-oxy-carbon-yl)benz-yl]benzimidazolium bromide monohydrate. Acta Crystallogr Sect E Struct Rep Online (2010) 0.97
Methyl 4-bromo-3-hy-droxy-benzoate. Acta Crystallogr Sect E Struct Rep Online (2010) 0.97
Potential misuse and inappropriate prescription practices involving opioid analgesics. Am J Manag Care (2013) 0.97
miRNAs in the pathogenesis of oncogenic human viruses. Cancer Lett (2010) 0.96
Quantifying kinetic paths of protein folding. Biophys J (2005) 0.96
The anticancer activities of wogonin in murine sarcoma S180 both in vitro and in vivo. Biol Pharm Bull (2006) 0.96