Published in Sci Rep on August 24, 2011
DNA analysis of an early modern human from Tianyuan Cave, China. Proc Natl Acad Sci U S A (2013) 2.31
Pulling out the 1%: whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries. Am J Hum Genet (2013) 1.92
Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA. Nat Protoc (2013) 1.80
Unlocking the vault: next-generation museum population genomics. Mol Ecol (2013) 1.77
Harnessing the power of RADseq for ecological and evolutionary genomics. Nat Rev Genet (2016) 1.10
Infectious disease, endangerment, and extinction. Int J Evol Biol (2013) 1.10
Reconstructing ancient genomes and epigenomes. Nat Rev Genet (2015) 1.06
Targeted capture in evolutionary and ecological genomics. Mol Ecol (2015) 1.01
Ancient genomics. Philos Trans R Soc Lond B Biol Sci (2015) 0.99
Investigation of Human Cancers for Retrovirus by Low-Stringency Target Enrichment and High-Throughput Sequencing. Sci Rep (2015) 0.89
Hybridization capture using short PCR products enriches small genomes by capturing flanking sequences (CapFlank). PLoS One (2014) 0.86
Mutation Scanning in Wheat by Exon Capture and Next-Generation Sequencing. PLoS One (2015) 0.84
Choosing the best plant for the job: a cost-effective assay to prescreen ancient plant remains destined for shotgun sequencing. PLoS One (2012) 0.83
Optimization of DNA recovery and amplification from non-carbonized archaeobotanical remains. PLoS One (2014) 0.82
Deep sequencing of RNA from ancient maize kernels. PLoS One (2013) 0.82
From promise to practice: pairing non-invasive sampling with genomics in conservation. PeerJ (2015) 0.80
Pros and cons of methylation-based enrichment methods for ancient DNA. Sci Rep (2015) 0.80
Next generation sequencing for characterizing biodiversity: promises and challenges. Genetica (2015) 0.79
Human evolution: a tale from ancient genomes. Philos Trans R Soc Lond B Biol Sci (2017) 0.78
Ancient population genomics and the study of evolution. Philos Trans R Soc Lond B Biol Sci (2015) 0.78
Barcoding the largest animals on Earth: ongoing challenges and molecular solutions in the taxonomic identification of ancient cetaceans. Philos Trans R Soc Lond B Biol Sci (2016) 0.77
Impacts of low coverage depths and post-mortem DNA damage on variant calling: a simulation study. BMC Genomics (2015) 0.77
Sequence capture by hybridization to explore modern and ancient genomic diversity in model and nonmodel organisms. Nucleic Acids Res (2016) 0.77
High-throughput monitoring of wild bee diversity and abundance via mitogenomics. Methods Ecol Evol (2015) 0.76
Target capture and massive sequencing of genes transcribed in Mytilus galloprovincialis. Biomed Res Int (2014) 0.76
A Robust Framework for Microbial Archaeology. Annu Rev Genomics Hum Genet (2017) 0.75
A method for positive forensic identification of samples from extremely low-coverage sequence data. BMC Genomics (2015) 0.75
The efficacy of high-throughput sequencing and target enrichment on charred archaeobotanical remains. Sci Rep (2016) 0.75
Improving ancient DNA genome assembly. PeerJ (2017) 0.75
The Sequence Alignment/Map format and SAMtools. Bioinformatics (2009) 232.39
Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics (2009) 190.94
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res (2010) 97.51
Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing. Nat Biotechnol (2009) 27.17
Genome-wide in situ exon capture for selective resequencing. Nat Genet (2007) 19.97
The B73 maize genome: complexity, diversity, and dynamics. Science (2009) 18.73
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. Bioinformatics (2009) 8.69
Targeted retrieval and analysis of five Neandertal mtDNA genomes. Science (2009) 5.79
Systematic comparison of three genomic enrichment methods for massively parallel DNA sequencing. Genome Res (2010) 5.76
Ancient DNA. Nat Rev Genet (2001) 5.07
Multiplexed DNA sequence capture of mitochondrial genomes using PCR products. PLoS One (2010) 3.35
Targeted investigation of the Neandertal genome by array-based sequence capture. Science (2010) 2.49
Enrichment of sequencing targets from the human genome by solution hybridization. Genome Biol (2009) 2.32
The Palomero genome suggests metal effects on domestication. Science (2009) 1.51
Next Generation Sequencing of Ancient DNA: Requirements, Strategies and Perspectives. Genes (Basel) (2010) 1.22
Performance of microarray and liquid based capture methods for target enrichment for massively parallel sequencing and SNP discovery. PLoS One (2011) 1.21
The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing. PLoS One (2007) 9.17
Rise and fall of the Beringian steppe bison. Science (2004) 7.91
Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature (2010) 7.51
Worldwide phylogeography of wild boar reveals multiple centers of pig domestication. Science (2005) 6.92
Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding. Nucleic Acids Res (2006) 5.31
Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960. Nature (2008) 5.05
An Aboriginal Australian genome reveals separate human dispersals into Asia. Science (2011) 4.84
Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis. Nucleic Acids Res (2006) 4.70
Diverse plant and animal genetic records from Holocene and Pleistocene sediments. Science (2003) 4.48
Early allelic selection in maize as revealed by ancient DNA. Science (2003) 4.38
DNA from pre-Clovis human coprolites in Oregon, North America. Science (2008) 3.92
Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe. Science (2012) 3.82
Ancient biomolecules from deep ice cores reveal a forested southern Greenland. Science (2007) 3.79
Monitoring endangered freshwater biodiversity using environmental DNA. Mol Ecol (2011) 3.45
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Nature (2013) 3.45
Ancient DNA reveals lack of continuity between neolithic hunter-gatherers and contemporary Scandinavians. Curr Biol (2009) 3.42
Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry. EMBO J (2010) 3.40
Whole-genome shotgun sequencing of mitochondria from ancient hair shafts. Science (2007) 2.85
Detection of a diverse marine fish fauna using environmental DNA from seawater samples. PLoS One (2012) 2.75
Genomic affinities of two 7,000-year-old Iberian hunter-gatherers. Curr Biol (2012) 2.67
Characterization of genetic miscoding lesions caused by postmortem damage. Am J Hum Genet (2002) 2.61
Species-specific responses of Late Quaternary megafauna to climate and humans. Nature (2011) 2.60
Control of female gamete formation by a small RNA pathway in Arabidopsis. Nature (2010) 2.53
Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species. Genome Res (2010) 2.50
Acute exercise remodels promoter methylation in human skeletal muscle. Cell Metab (2012) 2.46
Distribution patterns of postmortem damage in human mitochondrial DNA. Am J Hum Genet (2002) 2.46
Towards next-generation biodiversity assessment using DNA metabarcoding. Mol Ecol (2012) 2.43
Most of the extant mtDNA boundaries in south and southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans. BMC Genet (2004) 2.37
Radiation of extant cetaceans driven by restructuring of the oceans. Syst Biol (2009) 2.33
Ancient hybridization and an Irish origin for the modern polar bear matriline. Curr Biol (2011) 2.33
The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus). Genome Res (2009) 2.30
Glacial survival of boreal trees in northern Scandinavia. Science (2012) 2.28
Assessing the fidelity of ancient DNA sequences amplified from nuclear genes. Genetics (2005) 2.21
Maternal epigenetic pathways control parental contributions to Arabidopsis early embryogenesis. Cell (2011) 2.19
Paleo-Eskimo mtDNA genome reveals matrilineal discontinuity in Greenland. Science (2008) 2.19
Plasmodium falciparum erythrocyte membrane protein 1 domain cassettes 8 and 13 are associated with severe malaria in children. Proc Natl Acad Sci U S A (2012) 2.17
Statistical assignment of DNA sequences using Bayesian phylogenetics. Syst Biol (2008) 2.13
Pre-Clovis mastodon hunting 13,800 years ago at the Manis site, Washington. Science (2011) 2.11
Ancient DNA reveals late survival of mammoth and horse in interior Alaska. Proc Natl Acad Sci U S A (2009) 2.10
The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils. Proc Biol Sci (2012) 2.07
mapDamage: testing for damage patterns in ancient DNA sequences. Bioinformatics (2011) 2.05
A spatial dissection of the Arabidopsis floral transcriptome by MPSS. BMC Plant Biol (2008) 1.99
Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change. Proc Natl Acad Sci U S A (2012) 1.98
True single-molecule DNA sequencing of a pleistocene horse bone. Genome Res (2011) 1.88
Extreme reversed sexual size dimorphism in the extinct New Zealand moa Dinornis. Nature (2003) 1.85
Critical review of host specificity and its coevolutionary implications in the fig/fig-wasp mutualism. Proc Natl Acad Sci U S A (2005) 1.84
The genetic origins of the Andaman Islanders. Am J Hum Genet (2002) 1.82
Ancient bacteria show evidence of DNA repair. Proc Natl Acad Sci U S A (2007) 1.81
Nuclear gene indicates coat-color polymorphism in mammoths. Science (2006) 1.77
Geologically ancient DNA: fact or artefact? Trends Microbiol (2005) 1.71
A 10,000-year record of Arctic Ocean sea-ice variability--view from the beach. Science (2011) 1.70
Historical mammal extinction on Christmas Island (Indian Ocean) correlates with introduced infectious disease. PLoS One (2008) 1.70
Long-term persistence of bacterial DNA. Curr Biol (2004) 1.70
The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming. Genome Res (2011) 1.70
Genomic diversity and evolution of the head crest in the rock pigeon. Science (2013) 1.68
Pig domestication and human-mediated dispersal in western Eurasia revealed through ancient DNA and geometric morphometrics. Mol Biol Evol (2012) 1.68
Ecological, morphological and genetic divergence of sympatric North Atlantic killer whale populations. Mol Ecol (2009) 1.65
Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity. Mol Ecol (2011) 1.63
Macroevolution of complex retroviruses. Science (2009) 1.63
Proteomic analysis of a pleistocene mammoth femur reveals more than one hundred ancient bone proteins. J Proteome Res (2011) 1.62