Published in Bioinformatics on April 06, 2012
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An algorithm-based topographical biomaterials library to instruct cell fate. Proc Natl Acad Sci U S A (2011) 1.99
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Fewer permutations, more accurate P-values. Bioinformatics (2009) 1.91
Integrating genome assemblies with MAIA. Bioinformatics (2010) 1.70
A discriminating messenger RNA signature for bipolar disorder formed by an aberrant expression of inflammatory genes in monocytes. Arch Gen Psychiatry (2008) 1.66
Molecular classification of breast carcinomas by comparative genomic hybridization: a specific somatic genetic profile for BRCA1 tumors. Cancer Res (2002) 1.64
De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology. Microb Cell Fact (2012) 1.62
Ig gene rearrangement steps are initiated in early human precursor B cell subsets and correlate with specific transcription factor expression. J Immunol (2005) 1.61
A comparison of univariate and multivariate gene selection techniques for classification of cancer datasets. BMC Bioinformatics (2006) 1.57
Pooling breast cancer datasets has a synergetic effect on classification performance and improves signature stability. BMC Genomics (2008) 1.45
Somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis. Genome Res (2014) 1.40
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Distinct monocyte gene-expression profiles in autoimmune diabetes. Diabetes (2008) 1.25
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Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing. Plant J (2014) 1.22
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Microarray analysis reveals expression regulation of Wnt antagonists in differentiating osteoblasts. Bone (2005) 1.17
Gross deletions involving IGHM, BTK, or Artemis: a model for genomic lesions mediated by transposable elements. Am J Hum Genet (2008) 1.12
Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: a quantitative analysis of a compendium of chemostat-based transcriptome data. BMC Genomics (2009) 1.07
Integration of DNA copy number alterations and prognostic gene expression signatures in breast cancer patients. Clin Cancer Res (2010) 1.05
Predicting metabolic fluxes using gene expression differences as constraints. IEEE/ACM Trans Comput Biol Bioinform (2010) 1.03
Topology of molecular interaction networks. BMC Syst Biol (2013) 1.03
Exploiting combinatorial cultivation conditions to infer transcriptional regulation. BMC Genomics (2007) 1.00
De novo detection of copy number variation by co-assembly. Bioinformatics (2012) 0.99
GATA3 expression is decreased in psoriasis and during epidermal regeneration; induction by narrow-band UVB and IL-4. PLoS One (2011) 0.98
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Physiological and transcriptional responses of Saccharomyces cerevisiae to zinc limitation in chemostat cultures. Appl Environ Microbiol (2007) 0.98
Integration of clinical and gene expression data has a synergetic effect on predicting breast cancer outcome. PLoS One (2012) 0.93
Meta-analysis on blood transcriptomic studies identifies consistently coexpressed protein-protein interaction modules as robust markers of human aging. Aging Cell (2013) 0.93
Genome duplication and mutations in ACE2 cause multicellular, fast-sedimenting phenotypes in evolved Saccharomyces cerevisiae. Proc Natl Acad Sci U S A (2013) 0.93
Module-based outcome prediction using breast cancer compendia. PLoS One (2007) 0.92
Laboratory evolution of new lactate transporter genes in a jen1Δ mutant of Saccharomyces cerevisiae and their identification as ADY2 alleles by whole-genome resequencing and transcriptome analysis. FEMS Yeast Res (2012) 0.91
Sign language recognition by combining statistical DTW and independent classification. IEEE Trans Pattern Anal Mach Intell (2008) 0.89
The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies. BMC Bioinformatics (2006) 0.89
A scale-space method for detecting recurrent DNA copy number changes with analytical false discovery rate control. Nucleic Acids Res (2013) 0.89
The diversity of protein turnover and abundance under nitrogen-limited steady-state conditions in Saccharomyces cerevisiae. Mol Biosyst (2011) 0.88
Predicting the therapeutic efficacy of MSC in bone tissue engineering using the molecular marker CADM1. Biomaterials (2013) 0.88
Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold. Bioinformatics (2013) 0.88
Analysis of tumor heterogeneity and cancer gene networks using deep sequencing of MMTV-induced mouse mammary tumors. PLoS One (2013) 0.88
Metabolic pathway alignment between species using a comprehensive and flexible similarity measure. BMC Syst Biol (2008) 0.87
Introducing WISECONDOR for noninvasive prenatal diagnostics. Expert Rev Mol Diagn (2014) 0.86
Introgression browser: high-throughput whole-genome SNP visualization. Plant J (2015) 0.86
Edge-based image restoration. IEEE Trans Image Process (2005) 0.85
Pattern recognition in bioinformatics. Brief Bioinform (2013) 0.85
A comprehensive sensitivity analysis of microarray breast cancer classification under feature variability. BMC Bioinformatics (2009) 0.84
IL-7R expression and IL-7 signaling confer a distinct phenotype on developing human B-lineage cells. Blood (2011) 0.83
How biochemical constraints of cellular growth shape evolutionary adaptations in metabolism. Genetics (2013) 0.82
Integrating protein-protein interaction networks with gene-gene co-expression networks improves gene signatures for classifying breast cancer metastasis. J Integr Bioinform (2011) 0.82
HAT: hypergeometric analysis of tiling-arrays with application to promoter-GeneChip data. BMC Bioinformatics (2010) 0.81
Beyond genomic variation--comparison and functional annotation of three Brassica rapa genomes: a turnip, a rapid cycling and a Chinese cabbage. BMC Genomics (2014) 0.81
Integration of known transcription factor binding site information and gene expression data to advance from co-expression to co-regulation. Genomics Proteomics Bioinformatics (2007) 0.80
Making the difference: integrating structural variation detection tools. Brief Bioinform (2014) 0.80
SIRAC: Supervised Identification of Regions of Aberration in aCGH datasets. BMC Bioinformatics (2007) 0.80
Analysis of mass spectrometry data using sub-spectra. BMC Bioinformatics (2009) 0.80
An evaluation protocol for subtype-specific breast cancer event prediction. PLoS One (2011) 0.80
Exploring sequence characteristics related to high-level production of secreted proteins in Aspergillus niger. PLoS One (2012) 0.80
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Maximum significance clustering of oligonucleotide microarrays. Bioinformatics (2005) 0.78
Knowledge driven decomposition of tumor expression profiles. BMC Bioinformatics (2009) 0.77
Efficient calculation of compound similarity based on maximum common subgraphs and its application to prediction of gene transcript levels. Int J Bioinform Res Appl (2013) 0.77
An integrated approach of gene expression and DNA-methylation profiles of WNT signaling genes uncovers novel prognostic markers in acute myeloid leukemia. BMC Bioinformatics (2015) 0.76
Understanding regulation of metabolism through feasibility analysis. PLoS One (2012) 0.76
SPiCE: a web-based tool for sequence-based protein classification and exploration. BMC Bioinformatics (2014) 0.75
Single-molecule protein sequencing through fingerprinting: computational assessment. Phys Biol (2015) 0.75
Evolutionary optimization of kernel weights improves protein complex comembership prediction. IEEE/ACM Trans Comput Biol Bioinform (2009) 0.75
Exploiting next-generation sequencing to solve the haplotyping puzzle in polyploids: a simulation study. Brief Bioinform (2017) 0.75
Protein complex prediction using an integrative bioinformatics approach. J Bioinform Comput Biol (2007) 0.75
DNA microarray studies of hematopoietic subpopulations. Methods Mol Biol (2009) 0.75