Functional analysis of transcribed spacers of yeast ribosomal DNA.

PubWeight™: 1.67‹?› | Rank: Top 3%

🔗 View Article (PMC 552171)

Published in EMBO J on December 01, 1990

Authors

W Musters1, K Boon, C A van der Sande, H van Heerikhuizen, R J Planta

Author Affiliations

1: Biochemisch Laboratorium, Vrije Universiteit, Amsterdam, The Netherlands.

Articles citing this

Depletion of U3 small nucleolar RNA inhibits cleavage in the 5' external transcribed spacer of yeast pre-ribosomal RNA and impairs formation of 18S ribosomal RNA. EMBO J (1991) 5.67

Identification and functional analysis of two U3 binding sites on yeast pre-ribosomal RNA. EMBO J (1992) 4.17

The 5' end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site. EMBO J (1994) 4.10

Comprehensive molecular structure of the eukaryotic ribosome. Structure (2009) 2.04

Mutational analysis of an essential binding site for the U3 snoRNA in the 5' external transcribed spacer of yeast pre-rRNA. Nucleic Acids Res (1994) 1.63

Molecular species identification of Central European ground beetles (Coleoptera: Carabidae) using nuclear rDNA expansion segments and DNA barcodes. Front Zool (2010) 1.50

A system to study transcription by yeast RNA polymerase I within the chromosomal context: functional analysis of the ribosomal DNA enhancer and the RBP1/REB1 binding sites. EMBO J (1992) 1.39

Separate structural elements within internal transcribed spacer 1 of Saccharomyces cerevisiae precursor ribosomal RNA direct the formation of 17S and 26S rRNA. Nucleic Acids Res (1994) 1.34

Dynamic conformational model for the role of ITS2 in pre-rRNA processing in yeast. RNA (2002) 1.30

A new interaction between the mouse 5' external transcribed spacer of pre-rRNA and U3 snRNA detected by psoralen crosslinking. Nucleic Acids Res (1992) 1.24

An rRNA variable region has an evolutionarily conserved essential role despite sequence divergence. Mol Cell Biol (1994) 1.23

The roles of Rrp5p in the synthesis of yeast 18S and 5.8S rRNA can be functionally and physically separated. RNA (1999) 1.20

Role of the ITS2-proximal stem and evidence for indirect recognition of processing sites in pre-rRNA processing in yeast. Nucleic Acids Res (2001) 1.08

Secondary structure models of the nuclear internal transcribed spacer regions and 5.8S rRNA in Calciodinelloideae (Peridiniaceae) and other dinoflagellates. Nucleic Acids Res (2004) 1.07

Processing of truncated mouse or human rRNA transcribed from ribosomal minigenes transfected into mouse cells. Mol Cell Biol (1994) 1.06

Mutational analysis of an essential binding site for the U3 snoRNA in the 5' external transcribed spacer of yeast pre-rRNA. Nucleic Acids Res (1994) 1.01

A real-time PCR method for quantifying viable ascaris eggs using the first internally transcribed spacer region of ribosomal DNA. Appl Environ Microbiol (2006) 0.89

Secondary structure of two regions in expansion segments ES3 and ES6 with the potential of forming a tertiary interaction in eukaryotic 40S ribosomal subunits. RNA (2004) 0.86

Phenotypic effects of targeted mutations in the small subunit rRNA gene of Tetrahymena thermophila. Mol Cell Biol (1993) 0.83

Eukaryote-specific rRNA expansion segments function in ribosome biogenesis. RNA (2016) 0.81

Variable region V1 of Saccharomyces cerevisiae 18S rRNA participates in biogenesis and function of the small ribosomal subunit. Chromosoma (1997) 0.81

A deeply conserved, noncanonical miRNA hosted by ribosomal DNA. RNA (2015) 0.81

A secondary structural common core in the ribosomal ITS2 (internal transcribed spacer) of Culexspecies from diverse geographical locations. Bioinformation (2005) 0.80

DNA analyses of a private collection of microbial green algae contribute to a better understanding of microbial diversity. BMC Res Notes (2014) 0.80

Structural equivalence in the transcribed spacers of pre-rRNA transcripts in Schizosaccharomyces pombe. Nucleic Acids Res (1999) 0.79

Molecular authentication of three Italian melon accessions by ARMS-PCR and ITS1 (internal transcribed spacer 1) secondary structure prediction. Bioinformation (2008) 0.78

Analysis of the secondary structure of ITS1 in Pectinidae: implications for phylogenetic reconstruction and structural evolution. Mar Biotechnol (NY) (2007) 0.77

From DNA to proteins via the ribosome: structural insights into the workings of the translation machinery. Hum Genomics (2010) 0.76

Localization of rRNA transcribed spacer domains in the nucleolinus and maternal procentrosomes of surf clam (Spisula) oocytes. RNA Biol (2013) 0.75

Molecular phylogeny of 21 tropical bamboo species reconstructed by integrating non-coding internal transcribed spacer (ITS1 and 2) sequences and their consensus secondary structure. Genetica (2017) 0.75

Secondary structure of nrDNA Internal Transcribed Spacers as a useful tool to align highly divergent species in phylogenetic studies. Genet Mol Biol (2017) 0.75

Articles cited by this

Transformation of yeast by a replicating hybrid plasmid. Nature (1978) 16.35

Repeated genes in eukaryotes. Annu Rev Biochem (1980) 11.23

The origin of the genetic code. J Mol Biol (1968) 9.44

A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA. EMBO J (1987) 6.26

Compilation of small ribosomal subunit RNA sequences. Nucleic Acids Res (1988) 5.85

Biological catalysis by RNA. Annu Rev Biochem (1986) 5.69

Transcription of mouse rRNA genes by RNA polymerase I: in vitro and in vivo initiation and processing sites. Cell (1981) 4.97

Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in Saccharomyces cerevisiae. Mol Cell Biol (1990) 4.84

Scrambled ribosomal RNA gene pieces in Chlamydomonas reinhardtii mitochondrial DNA. Cell (1988) 3.78

The cytoplasmic maturation of a ribosomal precursor ribonucleic acid in yeast. J Biol Chem (1973) 3.28

The nucleotide sequence of the intergenic region between the 5.8S and 26S rRNA genes of the yeast ribosomal RNA operon. Possible implications for the interaction between 5.8S and 26S rRNA and the processing of the primary transcript. Nucleic Acids Res (1981) 2.67

Some characteristics of processing sites in ribosomal precursor RNA of yeast. Nucleic Acids Res (1980) 2.65

Primary processing of mammalian rRNA involves two adjacent cleavages and is not species specific. Mol Cell Biol (1987) 2.28

Multiple ribosomal RNA cleavage pathways in mammalian cells. Nucleic Acids Res (1981) 2.17

In vitro synthesis of 16S ribosomal RNA containing single base changes and assembly into a functional 30S ribosome. Biochemistry (1987) 1.94

Accurate processing and amplification of cloned germ line copies of ribosomal DNA injected into developing nuclei of Tetrahymena thermophila. Mol Cell Biol (1989) 1.85

At the heart of the nucleolus. Nature (1987) 1.79

Maturation of ribosomes in yeast. I Kinetic analysis by labelling of high molecular weight rRNA species. Biochim Biophys Acta (1976) 1.74

Evolutionary conservation of structure and function of high molecular weight ribosomal RNA. Prog Biophys Mol Biol (1988) 1.72

Linker scanning of the yeast RNA polymerase I promoter. Nucleic Acids Res (1989) 1.71

A system for the analysis of yeast ribosomal DNA mutations. Mol Cell Biol (1989) 1.69

Characterization of mouse 45S ribosomal RNA subspecies suggests that the first processing cleavage occurs 600 +/- 100 nucleotides from the 5' end and the second 500 +/- 100 nucleotides from the 3' end of a 13.9 kb precursor. Nucleic Acids Res (1985) 1.51

Involvement of bases 787-795 of Escherichia coli 16S ribosomal RNA in ribosomal subunit association. Proc Natl Acad Sci U S A (1986) 1.44

Comparisons of large subunit rRNAs reveal some eukaryote-specific elements of secondary structure. Biochimie (1987) 1.42

Isolation and characterization of yeast ribosomal RNA precursors and preribosomes. Methods Enzymol (1989) 1.40

Association of protein C23 with rapidly labeled nucleolar RNA. Biochemistry (1986) 1.34

Identifying functional regions of rRNA by insertion mutagenesis and complete gene replacement in Tetrahymena thermophila. EMBO J (1989) 1.30

Probing the conformation of 18S rRNA in yeast 40S ribosomal subunits with kethoxal. Biochemistry (1984) 1.28

Transcription and processing of RNA from mouse ribosomal DNA transfected into hamster cells. Mol Cell Biol (1989) 1.27

rRNA processing: removal of only nineteen bases at the gap between 28S alpha and 28S beta rRNAs in Sciara coprophila. Nucleic Acids Res (1985) 1.23

RIBOSOMAL RNA ON THE SURFACE OF RIBOSOMES. Science (1963) 1.16

Sporulation and rna2 lower ribosomal protein mRNA levels by different mechanisms in Saccharomyces cerevisiae. Mol Cell Biol (1982) 1.11

Rapid initial cleavage of nascent pre-rRNA transcripts in yeast. J Mol Biol (1988) 1.03

Molecular evolution. rDNA world falling to pieces. Nature (1988) 0.83

Articles by these authors

Growth-related expression of ribosomal protein genes in Saccharomyces cerevisiae. Mol Gen Genet (1993) 14.93

The human transcriptome map: clustering of highly expressed genes in chromosomal domains. Science (2001) 12.35

Cytoplasmic dynein is required for normal nuclear segregation in yeast. Proc Natl Acad Sci U S A (1993) 5.83

The primary and secondary structure of yeast 26S rRNA. Nucleic Acids Res (1981) 4.10

Regulation of nitrate assimilation and nitrate respiration in Aerobacter aerogenes. J Bacteriol (1968) 3.80

Complete DNA sequence of yeast chromosome XI. Nature (1994) 3.51

The genes coding for histone H3 and H4 in Neurospora crassa are unique and contain intervening sequences. Nucleic Acids Res (1983) 2.93

The nucleotide sequence of the intergenic region between the 5.8S and 26S rRNA genes of the yeast ribosomal RNA operon. Possible implications for the interaction between 5.8S and 26S rRNA and the processing of the primary transcript. Nucleic Acids Res (1981) 2.67

Conserved sequence elements upstream of the gene encoding yeast ribosomal protein L25 are involved in transcription activation. EMBO J (1986) 2.64

The structure of the gene coding for the phosphorylated ribosomal protein S10 in yeast. Nucleic Acids Res (1982) 2.54

Structure and function of the nontranscribed spacer regions of yeast rDNA. Nucleic Acids Res (1984) 2.51

Conserved sequences upstream of yeast ribosomal protein genes. Curr Genet (1985) 2.46

3'-End formation of transcripts from the yeast rRNA operon. EMBO J (1986) 2.41

Ribosomal precursor particles from yeast. Exp Cell Res (1975) 2.41

Structural comparison of yeast ribosomal protein genes. Nucleic Acids Res (1984) 2.29

Characterization of human c-fes/fps reveals a new transcription unit (fur) in the immediately upstream region of the proto-oncogene. Mol Biol Rep (1986) 2.16

The Saccharomyces cerevisiae HSP12 gene is activated by the high-osmolarity glycerol pathway and negatively regulated by protein kinase A. Mol Cell Biol (1995) 2.09

The course of the assembly of ribosomal subunits in yeast. Biochim Biophys Acta (1978) 2.07

The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of psi55 in both mitochondrial and cytoplasmic tRNAs. Nucleic Acids Res (1997) 2.03

DNA-binding requirements of the yeast protein Rap1p as selected in silico from ribosomal protein gene promoter sequences. Bioinformatics (1999) 2.02

The transcription termination site of the ribosomal RNA operon in yeast. Nucleic Acids Res (1980) 2.01

Control of ribosome biogenesis in yeast. Trends Genet (1988) 2.00

A new nomenclature for the cytoplasmic ribosomal proteins of Saccharomyces cerevisiae. Nucleic Acids Res (1997) 1.99

Secondary methylation of yeast ribosomal precursor RNA. Eur J Biochem (1977) 1.94

Specific binding of TUF factor to upstream activation sites of yeast ribosomal protein genes. EMBO J (1987) 1.90

Isolation of cloned ribosomal protein genes from the yeast Saccharomyces carlsbergensis. Gene (1981) 1.90

Terminal nucleotide sequences of 17-S ribosomal RNA and its immediate precursor 18-S RNA in yeast. Eur J Biochem (1977) 1.83

Analysis of the methylation sites in yeast ribosomal RNA. Eur J Biochem (1973) 1.82

Structure and organization of two linked ribosomal protein genes in yeast. Nucleic Acids Res (1984) 1.81

Transcriptional control of yeast ribosomal protein synthesis during carbon-source upshift. Nucleic Acids Res (1987) 1.76

Maturation of ribosomes in yeast. I Kinetic analysis by labelling of high molecular weight rRNA species. Biochim Biophys Acta (1976) 1.74

Linker scanning of the yeast RNA polymerase I promoter. Nucleic Acids Res (1989) 1.71

Ribosome biogenesis in yeast. Prog Nucleic Acid Res Mol Biol (1991) 1.70

A system for the analysis of yeast ribosomal DNA mutations. Mol Cell Biol (1989) 1.69

Analysis of the protein composition of yeast ribosomal subunits by two-dimensional polyacrylamide gel electrophoresis. Mol Biol Rep (1974) 1.68

UTF1, a novel transcriptional coactivator expressed in pluripotent embryonic stem cells and extra-embryonic cells. EMBO J (1998) 1.65

Ribosomal protein genes of yeast contain intervening sequences. Gene (1982) 1.65

Mild temperature shock affects transcription of yeast ribosomal protein genes as well as the stability of their mRNAs. Nucleic Acids Res (1988) 1.65

Different roles for abf1p and a T-rich promoter element in nucleosome organization of the yeast RPS28A gene. Nucleic Acids Res (2000) 1.62

Functional analysis of internal transcribed spacer 2 of Saccharomyces cerevisiae ribosomal DNA. J Mol Biol (1992) 1.59

The cellular level of yeast ribosomal protein L25 is controlled principally by rapid degradation of excess protein. Curr Genet (1986) 1.55

The human alpha-amylase multigene family consists of haplotypes with variable numbers of genes. Genomics (1989) 1.54

Biosynthesis of a hypermodified nucleotide in Saccharomyces carlsbergensis 17S and HeLa-cell 18S ribosomal ribonucleic acid. Biochem J (1978) 1.53

Yeast ribosomal protein S33 is encoded by an unsplit gene. Nucleic Acids Res (1983) 1.53

Coordinate expression of ribosomal protein genes in yeast as a function of cellular growth rate. Mol Cell Biochem (1991) 1.50

The primary transcript of the ribosomal repeating unit in yeast. Nucleic Acids Res (1979) 1.48

Starting up yeast glycolysis. Trends Microbiol (1998) 1.48

Osmostress-induced changes in yeast gene expression. Mol Microbiol (1992) 1.46

Sequence of the 3'-terminal 21 nucleotides of yeast 17S ribosomal RNA. Nucleic Acids Res (1977) 1.41

Stepwise dissociation of yeast 60S ribosomal subunits by LiCl and identification of L25 as a primary 26S rRNA binding protein. Eur J Biochem (1984) 1.41

Isolation and characterization of yeast ribosomal RNA precursors and preribosomes. Methods Enzymol (1989) 1.40

Characterization of a low density cytoplasmic membrane subfraction isolated from Escherichia coli. Biochim Biophys Acta (1975) 1.40

A system to study transcription by yeast RNA polymerase I within the chromosomal context: functional analysis of the ribosomal DNA enhancer and the RBP1/REB1 binding sites. EMBO J (1992) 1.39

Adaptation to Cadmium by Klebsiella aerogenes Growing in Continuous Culture Proceeds Mainly via Formation of Cadmium Sulfide. Appl Environ Microbiol (1982) 1.38

Inorganic phosphate accumulation and cadmium detoxification in Klebsiella aerogenes NCTC 418 growing in continuous culture. Appl Environ Microbiol (1984) 1.38

The investigation of the ribosomal RNA sites in yeast DNA by the hybridization technique. Biochim Biophys Acta (1968) 1.36

Termination of transcription by yeast RNA polymerase I. Nucleic Acids Res (1989) 1.35

Separate structural elements within internal transcribed spacer 1 of Saccharomyces cerevisiae precursor ribosomal RNA direct the formation of 17S and 26S rRNA. Nucleic Acids Res (1994) 1.34

Evolutionarily conserved structural elements are critical for processing of Internal Transcribed Spacer 2 from Saccharomyces cerevisiae precursor ribosomal RNA. J Mol Biol (1995) 1.34

An ARS/silencer binding factor also activates two ribosomal protein genes in yeast. Nucleic Acids Res (1989) 1.34

The yeast RNA polymerase I promoter: ribosomal DNA sequences involved in transcription initiation and complex formation in vitro. Nucleic Acids Res (1991) 1.33

In vivo mutational analysis of ribosomal RNA in Saccharomyces cerevisiae. Methods Mol Biol (1998) 1.33

Chaperonin complex with a newly folded protein encapsulated in the folding chamber. Nature (2009) 1.30

Molecular cloning of the rDNA of Saccharomyces rosei and comparison of its transcription initiation region with that of Saccharomyces carlsbergensis. Gene (1983) 1.28

Ribosomal precursor RNA in Saccharomyces carlsbergensis. Eur J Biochem (1967) 1.27

Analysis of upstream activation sites of yeast ribosomal protein genes. Nucleic Acids Res (1987) 1.25

Mutational analysis of the upstream activation site of yeast ribosomal protein genes. Curr Genet (1989) 1.24

Transcriptional regulation of the Saccharomyces cerevisiae amino acid permease gene BAP2. Mol Gen Genet (2001) 1.24

The molecular weights of yeast ribosomal precursor RNAs. Mol Biol Rep (1975) 1.23

Co-evolution of ligand-receptor pairs in the vasopressin/oxytocin superfamily of bioactive peptides. J Biol Chem (1996) 1.21

The genes for yeast ribosomal proteins S24 and L46 are adjacent and divergently transcribed. Nucleic Acids Res (1985) 1.19

Ribosomal proteins EL11 from Escherichia coli and L15 from Saccharomyces cerevisiae bind to the same site in both yeast 26 S and mouse 28 S rRNA. J Mol Biol (1987) 1.19

Transcription of an artificial ribosomal RNA gene in yeast. EMBO J (1984) 1.18

The primary structure of the gene encoding yeast ribosomal protein L16. FEBS Lett (1984) 1.17

Transcript analysis of 1003 novel yeast genes using high-throughput northern hybridizations. EMBO J (2001) 1.17

Transcription activation of yeast ribosomal protein genes requires additional elements apart from binding sites for Abf1p or Rap1p. Nucleic Acids Res (1995) 1.17

Stp1p, Stp2p and Abf1p are involved in regulation of expression of the amino acid transporter gene BAP3 of Saccharomyces cerevisiae. Nucleic Acids Res (2000) 1.15

Deletion mapping of the yeast Pol I promoter. Curr Genet (1985) 1.15

Non-ribosomal nucleotide sequences in 7-S RNA, the immediate precursor of 5.8-S ribosomal RNA in yeast. Eur J Biochem (1978) 1.14

A conserved sequence element is present around the transcription initiation site for RNA polymerase A in Saccharomycetoideae. Nucleic Acids Res (1984) 1.14

Nitrate reduction in aerobacter aerogenes. 3. Nitrate reduction, chlorate resistance and formate metabolism in mutant strains. Arch Mikrobiol (1967) 1.14

Heterogeneity of the genes coding for 5 S RNA in three related strains of the genus Bacillus. Mol Gen Genet (1977) 1.13

The size and the location of the ribosomal RNA segments in ribosomal precursor RNA of yeast. Biochim Biophys Acta (1971) 1.12

Multifunctional DNA-binding proteins mediate concerted transcription activation of yeast ribosomal protein genes. Biochim Biophys Acta (1990) 1.11

Quantitative analysis of the protein composition of yeast ribosomes. Eur J Biochem (1978) 1.10

Molecular cloning and pharmacological characterization of a molluscan octopamine receptor. Mol Pharmacol (1997) 1.10