Published in Plant Physiol on May 07, 2012
Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis. Proc Natl Acad Sci U S A (2013) 1.48
SAUR36, a small auxin up RNA gene, is involved in the promotion of leaf senescence in Arabidopsis. Plant Physiol (2012) 0.93
A novel RNA binding protein affects rbcL gene expression and is specific to bundle sheath chloroplasts in C4 plants. BMC Plant Biol (2013) 0.85
Genomic era analyses of RNA secondary structure and RNA-binding proteins reveal their significance to post-transcriptional regulation in plants. Plant Sci (2013) 0.84
The mRNA decay factor PAT1 functions in a pathway including MAP kinase 4 and immune receptor SUMM2. EMBO J (2015) 0.83
Extensive translational regulation of gene expression in an allopolyploid (Glycine dolichocarpa). Plant Cell (2014) 0.81
Exploring mechanisms linked to differentiation and function of dimorphic chloroplasts in the single cell C4 species Bienertia sinuspersici. BMC Plant Biol (2014) 0.79
The arabidopsis RNA-binding protein AtRGGA regulates tolerance to salt and drought stress. Plant Physiol (2015) 0.78
Comparative Analysis of the Brassica napus Root and Leaf Transcript Profiling in Response to Drought Stress. Int J Mol Sci (2015) 0.77
Transcriptome profiling of drought responsive noncoding RNAs and their target genes in rice. BMC Genomics (2016) 0.76
Characterization of Soybean Genetically Modified for Drought Tolerance in Field Conditions. Front Plant Sci (2017) 0.75
Analysis of Ribosome-Associated mRNAs in Rice Reveals the Importance of Transcript Size and GC Content in Translation. G3 (Bethesda) (2016) 0.75
Auxin Signaling in Regulation of Plant Translation Reinitiation. Front Plant Sci (2017) 0.75
Rapid recovery gene downregulation during excess-light stress and recovery in Arabidopsis. Plant Cell (2017) 0.75
Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A (1998) 192.97
The COG database: an updated version includes eukaryotes. BMC Bioinformatics (2003) 60.98
A genomic perspective on protein families. Science (1997) 50.51
Regulation of translation initiation in eukaryotes: mechanisms and biological targets. Cell (2009) 14.51
P bodies and the control of mRNA translation and degradation. Mol Cell (2007) 9.98
Engineered GFP as a vital reporter in plants. Curr Biol (1996) 9.03
mRNA stability in mammalian cells. Microbiol Rev (1995) 8.78
Sugar sensing and signaling in plants: conserved and novel mechanisms. Annu Rev Plant Biol (2006) 7.03
Stress granules: the Tao of RNA triage. Trends Biochem Sci (2008) 6.27
Rapid Changes in Levels of Polyribosomes in Zea mays in Response to Water Stress. Plant Physiol (1970) 4.84
Regulation of mRNA stability in mammalian cells. Gene (2001) 4.55
Production and scavenging of reactive oxygen species in chloroplasts and their functions. Plant Physiol (2006) 4.38
Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell. Ann Bot (2008) 4.15
Regulation of mRNA translation by 5'- and 3'-UTR-binding factors. Trends Biochem Sci (2003) 3.92
Photosynthetic carbon assimilation and associated metabolism in relation to water deficits in higher plants. Plant Cell Environ (2002) 3.48
Overexpression of a plasma membrane Na+/H+ antiporter gene improves salt tolerance in Arabidopsis thaliana. Nat Biotechnol (2002) 3.18
Polysomes, P bodies and stress granules: states and fates of eukaryotic mRNAs. Curr Opin Cell Biol (2009) 3.01
Regulation of gene expression by alternative untranslated regions. Trends Genet (2006) 2.95
Approaches to increasing the salt tolerance of wheat and other cereals. J Exp Bot (2006) 2.94
Post-transcriptional regulation of gene expression by degradation of messenger RNAs. J Cell Physiol (2003) 2.59
Characterization of a rice gene showing organ-specific expression in response to salt stress and drought. Plant Cell (1990) 2.57
Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana. Plant Cell (2007) 2.51
Chromatin techniques for plant cells. Plant J (2004) 2.50
Mechanisms underlying plant resilience to water deficits: prospects for water-saving agriculture. J Exp Bot (2004) 2.39
Diffusive and metabolic limitations to photosynthesis under drought and salinity in C(3) plants. Plant Biol (Stuttg) (2004) 2.30
Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch- and specific clock-controlled genes. Proc Natl Acad Sci U S A (2002) 2.14
Water deficit-induced changes in abscisic Acid, growth, polysomes, and translatable RNA in soybean hypocotyls. Plant Physiol (1988) 2.07
Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions. Plant Physiol (2010) 2.02
Water stress and protein synthesis: I. Differential inhibition of protein synthesis. Plant Physiol (1975) 1.90
Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana. Plant J (2004) 1.87
RNAPol-ChIP: a novel application of chromatin immunoprecipitation to the analysis of real-time gene transcription. Nucleic Acids Res (2004) 1.86
Characterization of the auxin-inducible SAUR-AC1 gene for use as a molecular genetic tool in Arabidopsis. Plant Physiol (1994) 1.76
Regulated ARE-mediated mRNA decay in Saccharomyces cerevisiae. Mol Cell (2001) 1.75
Developmental control of crassulacean Acid metabolism inducibility by salt stress in the common ice plant. Plant Physiol (1990) 1.75
Polysomes, Messenger RNA, and Growth in Soybean Stems during Development and Water Deficit. Plant Physiol (1988) 1.75
Water stress, rapid polyribosome reductions and growth. Plant Physiol (1976) 1.71
Functional analysis of the 3' control region of the potato wound-inducible proteinase inhibitor II gene. Plant Cell (1989) 1.69
Rapid variations of mesophyll conductance in response to changes in CO2 concentration around leaves. Plant Cell Environ (2007) 1.68
Transcriptional regulation of PS-IAA4/5 and PS-IAA6 early gene expression by indoleacetic acid and protein synthesis inhibitors in pea (Pisum sativum). J Mol Biol (1995) 1.67
mRNA sequence features that contribute to translational regulation in Arabidopsis. Nucleic Acids Res (2005) 1.63
Coordination of plastid and nuclear gene expression. Philos Trans R Soc Lond B Biol Sci (2003) 1.61
mRNA stability: in trans-it. Curr Opin Cell Biol (1992) 1.57
The control of mRNA stability in response to extracellular stimuli. Mol Cells (2002) 1.51
Red Light-Independent Instability of Oat Phytochrome mRNA in Vivo. Plant Cell (1992) 1.50
The GCR1, GPA1, PRN1, NF-Y signal chain mediates both blue light and abscisic acid responses in Arabidopsis. Plant Physiol (2007) 1.50
Genomics and gene transcription kinetics in yeast. Trends Genet (2007) 1.50
Plastid signalling to the nucleus: messengers still lost in the mists? Trends Genet (2009) 1.50
Overexpression of the transcription factor AP37 in rice improves grain yield under drought conditions. Plant Physiol (2009) 1.42
Approaches to achieve high-level heterologous protein production in plants. Plant Biotechnol J (2007) 1.41
When there is too much light. Plant Physiol (2001) 1.36
Multiple regions of the Arabidopsis SAUR-AC1 gene control transcript abundance: the 3' untranslated region functions as an mRNA instability determinant. EMBO J (1996) 1.34
Translational control of cellular and viral mRNAs. Plant Mol Biol (1996) 1.33
Oat phytochrome A mRNA degradation appears to occur via two distinct pathways. Plant Cell (1994) 1.31
Isolation of plant polysomal mRNA by differential centrifugation and ribosome immunopurification methods. Methods Mol Biol (2009) 1.30
Circadian control of messenger RNA stability. Association with a sequence-specific messenger RNA decay pathway. Plant Physiol (2005) 1.28
Arabidopsis decapping 5 is required for mRNA decapping, P-body formation, and translational repression during postembryonic development. Plant Cell (2009) 1.24
Reactive oxygen species mediate Na+-induced SOS1 mRNA stability in Arabidopsis. Plant J (2007) 1.24
Degradation products of the mRNA encoding the small subunit of ribulose-1,5-bisphosphate carboxylase in soybean and transgenic petunia. Plant Cell (1992) 1.23
Regulated phosphorylation of 40S ribosomal protein S6 in root tips of maize. Plant Physiol (2003) 1.20
Dynamic and reversible changes in histone H3-Lys4 methylation and H3 acetylation occurring at submergence-inducible genes in rice. Plant Cell Physiol (2006) 1.19
The 5' untranslated region of the At-P5R gene is involved in both transcriptional and post-transcriptional regulation. Plant J (2001) 1.15
Faithful degradation of soybean rbcS mRNA in vitro. Mol Cell Biol (1994) 1.11
High-level and ubiquitous expression of the rice cytochrome c gene OsCc1 and its promoter activity in transgenic plants provides a useful promoter for transgenesis of monocots. Plant Physiol (2002) 1.09
Mutational analysis of the DST element in tobacco cells and transgenic plants: identification of residues critical for mRNA instability. RNA (1996) 1.06
Kill the messenger: mRNA decay and plant development. Curr Opin Plant Biol (2008) 1.06
Getting the message across: cytoplasmic ribonucleoprotein complexes. Trends Plant Sci (2009) 1.03
The histone deacetylase OsHDAC1 epigenetically regulates the OsNAC6 gene that controls seedling root growth in rice. Plant J (2009) 0.98
Comparative analysis of the plant mRNA-destabilizing element, DST, in mammalian and tobacco cells. Plant Mol Biol (2002) 0.89
Transcriptome analysis reveals season-specific rbcS gene expression profiles in diploid perennial ryegrass (Lolium perenne L.). Plant Biotechnol J (2007) 0.85
Regulated and quality-control mRNA turnover pathways in eukaryotes. Biochem Soc Trans (2010) 0.85
The Transition of Poised RNA Polymerase II to an Actively Elongating State Is a "Complex" Affair. Genet Res Int (2011) 0.78
Post-transcriptional regulation of bifunctional alpha-amylase/subtilisin inhibitor expression in barley embryos by abscisic acid. Plant Mol Biol (1995) 0.78
Isolation and characterization of a rice full-length cDNA clone encoding a polyubiquitin. Plant Physiol (1994) 0.76
Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature (2006) 6.68
Trehalose accumulation in rice plants confers high tolerance levels to different abiotic stresses. Proc Natl Acad Sci U S A (2002) 3.33
A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice. Plant Cell (2006) 2.95
Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis. Proc Natl Acad Sci U S A (2009) 2.77
RopGAP4-dependent Rop GTPase rheostat control of Arabidopsis oxygen deprivation tolerance. Science (2002) 2.18
Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants. Nature (2011) 2.06
Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions. Plant Physiol (2010) 2.02
Plant responses to hypoxia--is survival a balancing act? Trends Plant Sci (2004) 2.01
Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice. Proc Natl Acad Sci U S A (2008) 2.00
Annotating genes of known and unknown function by large-scale coexpression analysis. Plant Physiol (2008) 1.95
Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana. Plant J (2008) 1.92
Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana. Plant J (2004) 1.87
Rice Undeveloped Tapetum1 is a major regulator of early tapetum development. Plant Cell (2005) 1.83
Genome-wide analysis of transcript abundance and translation in Arabidopsis seedlings subjected to oxygen deprivation. Ann Bot (2005) 1.82
Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses. Plant Physiol (2010) 1.79
Arabidopsis CBF3/DREB1A and ABF3 in transgenic rice increased tolerance to abiotic stress without stunting growth. Plant Physiol (2005) 1.70
Immunopurification of polyribosomal complexes of Arabidopsis for global analysis of gene expression. Plant Physiol (2005) 1.66
mRNA sequence features that contribute to translational regulation in Arabidopsis. Nucleic Acids Res (2005) 1.63
Unraveling the tapestry of networks involving reactive oxygen species in plants. Plant Physiol (2008) 1.51
Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis. Proc Natl Acad Sci U S A (2013) 1.48
Methyl jasmonate reduces grain yield by mediating stress signals to alter spikelet development in rice. Plant Physiol (2009) 1.45
The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice. Plant Cell (2011) 1.44
Overexpression of the transcription factor AP37 in rice improves grain yield under drought conditions. Plant Physiol (2009) 1.42
Flood adaptive traits and processes: an overview. New Phytol (2015) 1.39
Regulation of translational initiation in plants. Curr Opin Plant Biol (2002) 1.39
OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field. Plant Biotechnol J (2012) 1.34
OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice. Plant J (2011) 1.33
Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Plant Physiol (2005) 1.32
Isolation of plant polysomal mRNA by differential centrifugation and ribosome immunopurification methods. Methods Mol Biol (2009) 1.30
RiceArrayNet: a database for correlating gene expression from transcriptome profiling, and its application to the analysis of coexpressed genes in rice. Plant Physiol (2009) 1.30
Molecular characterization of the submergence response of the Arabidopsis thaliana ecotype Columbia. New Phytol (2011) 1.26
The roles of reactive oxygen species in plant cells. Plant Physiol (2006) 1.25
The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions. Plant Biotechnol J (2012) 1.25
Rice sHsp genes: genomic organization and expression profiling under stress and development. BMC Genomics (2009) 1.24
Retinoblastoma protein regulates cell proliferation, differentiation, and endoreduplication in plants. Plant J (2005) 1.23
The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors. Plant Physiol (2010) 1.23
Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis. Genome Res (2014) 1.20
Regulated phosphorylation of 40S ribosomal protein S6 in root tips of maize. Plant Physiol (2003) 1.20
Ethylene suppression of sugar-induced anthocyanin pigmentation in Arabidopsis. Plant Physiol (2010) 1.19
AtMYB44 regulates WRKY70 expression and modulates antagonistic interaction between salicylic acid and jasmonic acid signaling. Plant J (2012) 1.17
Expression of barley HvCBF4 enhances tolerance to abiotic stress in transgenic rice. Plant Biotechnol J (2007) 1.15
Genome cluster database. A sequence family analysis platform for Arabidopsis and rice. Plant Physiol (2005) 1.14
Two Rumex species from contrasting hydrological niches regulate flooding tolerance through distinct mechanisms. Plant Cell (2013) 1.12
Profiling of translatomes of in vivo-grown pollen tubes reveals genes with roles in micropylar guidance during pollination in Arabidopsis. Plant Cell (2014) 1.11
High-level and ubiquitous expression of the rice cytochrome c gene OsCc1 and its promoter activity in transgenic plants provides a useful promoter for transgenesis of monocots. Plant Physiol (2002) 1.09
Evolutionary analysis of the Sub1 gene cluster that confers submergence tolerance to domesticated rice. Ann Bot (2008) 1.09
What makes species unique? The contribution of proteins with obscure features. Genome Biol (2006) 1.08
Dynamic Light Regulation of Translation Status in Arabidopsis thaliana. Front Plant Sci (2012) 1.08
Transcriptome analysis in Brassica rapa under the abiotic stresses using Brassica 24K oligo microarray. Mol Cells (2008) 1.07
Getting the message across: cytoplasmic ribonucleoprotein complexes. Trends Plant Sci (2009) 1.03
Rapid and reversible light-mediated chromatin modifications of Arabidopsis phytochrome A locus. Plant Cell (2011) 1.02
Transient MPK6 activation in response to oxygen deprivation and reoxygenation is mediated by mitochondria and aids seedling survival in Arabidopsis. Plant Mol Biol (2011) 1.00
APUM23, a nucleolar Puf domain protein, is involved in pre-ribosomal RNA processing and normal growth patterning in Arabidopsis. Plant J (2010) 1.00
The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice. Plant Physiol (2012) 0.99
RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice. Plant Cell (2010) 0.99
The histone deacetylase OsHDAC1 epigenetically regulates the OsNAC6 gene that controls seedling root growth in rice. Plant J (2009) 0.98
Overexpression of rice isoflavone reductase-like gene (OsIRL) confers tolerance to reactive oxygen species. Physiol Plant (2009) 0.97
Gene and enhancer trap transposable elements reveal oxygen deprivation-regulated genes and their complex patterns of expression in Arabidopsis. Ann Bot (2003) 0.97
Application of two bicistronic systems involving 2A and IRES sequences to the biosynthesis of carotenoids in rice endosperm. Plant Biotechnol J (2010) 0.97
Analysis of five novel putative constitutive gene promoters in transgenic rice plants. J Exp Bot (2010) 0.97
Selective mRNA sequestration by OLIGOURIDYLATE-BINDING PROTEIN 1 contributes to translational control during hypoxia in Arabidopsis. Proc Natl Acad Sci U S A (2014) 0.96
Coexpression network analysis associated with call of rice seedlings for encountering heat stress. Plant Mol Biol (2013) 0.95
Survey of differentially expressed proteins and genes in jasmonic acid treated rice seedling shoot and root at the proteomics and transcriptomics levels. J Proteome Res (2007) 0.95
Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism. Plant J (2011) 0.94
Comparison of GC-MS and NMR for metabolite profiling of rice subjected to submergence stress. J Proteome Res (2012) 0.92
Overexpression of salicylic acid carboxyl methyltransferase reduces salicylic acid-mediated pathogen resistance in Arabidopsis thaliana. Plant Mol Biol (2007) 0.91
Plant biology: Genetics of high-rise rice. Nature (2009) 0.91
Proteomics analysis of rice lesion mimic mutant (spl1) reveals tightly localized probenazole-induced protein (PBZ1) in cells undergoing programmed cell death. J Proteome Res (2008) 0.88
Linking genes of unknown function with abiotic stress responses by high-throughput phenotype screening. Physiol Plant (2013) 0.88
Transcriptome analysis of leaf and root of rice seedling to acute dehydration. Rice (N Y) (2013) 0.88
Characteristics and significance of intergenic polyadenylated RNA transcription in Arabidopsis. Plant Physiol (2012) 0.88
Characterization of distinct root and shoot responses to low-oxygen stress in Arabidopsis with a focus on primary C- and N-metabolism. Plant Cell Environ (2014) 0.87
Functional analysis of six drought-inducible promoters in transgenic rice plants throughout all stages of plant growth. Planta (2010) 0.87
Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue-dependent sugar and hormone-sensitivities. Mol Cells (2013) 0.86
Chloroplast-targeted expression of synthetic cry1Ac in transgenic rice as an alternative strategy for increased pest protection. Planta (2009) 0.86