MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads.

PubWeight™: 3.52‹?› | Rank: Top 1%

🔗 View Article (PMC 3488206)

Published in Nucleic Acids Res on July 19, 2012

Authors

Toshiaki Namiki1, Tsuyoshi Hachiya, Hideaki Tanaka, Yasubumi Sakakibara

Author Affiliations

1: Department of Biosciences and Informatics, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama 223-8522, Japan.

Articles citing this

(truncated to the top 100)

Ray Meta: scalable de novo metagenome assembly and profiling. Genome Biol (2012) 3.64

Scaling metagenome sequence assembly with probabilistic de Bruijn graphs. Proc Natl Acad Sci U S A (2012) 3.10

PRICE: software for the targeted assembly of components of (Meta) genomic sequence data. G3 (Bethesda) (2013) 2.85

Biogeography and individuality shape function in the human skin metagenome. Nature (2014) 2.27

The future is now: single-cell genomics of bacteria and archaea. FEMS Microbiol Rev (2013) 2.10

Sequence assembly demystified. Nat Rev Genet (2013) 2.09

Orione, a web-based framework for NGS analysis in microbiology. Bioinformatics (2014) 2.07

Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning. Nat Biotechnol (2015) 2.01

De novo assembly of highly diverse viral populations. BMC Genomics (2012) 1.87

Computational meta'omics for microbial community studies. Mol Syst Biol (2013) 1.84

MetAMOS: a modular and open source metagenomic assembly and analysis pipeline. Genome Biol (2013) 1.74

Assessing the human gut microbiota in metabolic diseases. Diabetes (2013) 1.64

MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm. Microbiome (2014) 1.63

Current opportunities and challenges in microbial metagenome analysis--a bioinformatic perspective. Brief Bioinform (2012) 1.50

A metagenomics and case-control study to identify viruses associated with bovine respiratory disease. J Virol (2015) 1.48

Automated ensemble assembly and validation of microbial genomes. BMC Bioinformatics (2014) 1.33

Metavir 2: new tools for viral metagenome comparison and assembled virome analysis. BMC Bioinformatics (2014) 1.32

An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data. Nucleic Acids Res (2015) 1.30

An introduction to the analysis of shotgun metagenomic data. Front Plant Sci (2014) 1.27

Reconstructing an ancestral genotype of two hexachlorocyclohexane-degrading Sphingobium species using metagenomic sequence data. ISME J (2013) 1.26

Comparing viral metagenomics methods using a highly multiplexed human viral pathogens reagent. J Virol Methods (2014) 1.20

Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice. Proc Natl Acad Sci U S A (2014) 1.17

A novel min-cost flow method for estimating transcript expression with RNA-Seq. BMC Bioinformatics (2013) 1.16

Analysis of plant microbe interactions in the era of next generation sequencing technologies. Front Plant Sci (2014) 1.15

Metagenomics: tools and insights for analyzing next-generation sequencing data derived from biodiversity studies. Bioinform Biol Insights (2015) 1.13

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center. Nucleic Acids Res (2016) 1.12

Species-level deconvolution of metagenome assemblies with Hi-C-based contact probability maps. G3 (Bethesda) (2014) 1.11

Towards predictive models of the human gut microbiome. J Mol Biol (2014) 1.09

Co-enriching microflora associated with culture based methods to detect Salmonella from tomato phyllosphere. PLoS One (2013) 1.08

Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut. BMC Genomics (2014) 1.07

Metagenomics for pathogen detection in public health. Genome Med (2013) 1.03

Bioinformatic approaches for functional annotation and pathway inference in metagenomics data. Brief Bioinform (2012) 1.02

Uncovering oral Neisseria tropism and persistence using metagenomic sequencing. Nat Microbiol (2016) 1.01

Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome. Comput Struct Biotechnol J (2015) 1.00

The rumen microbial metagenome associated with high methane production in cattle. BMC Genomics (2015) 0.99

Analytical tools and databases for metagenomics in the next-generation sequencing era. Genomics Inform (2013) 0.98

Crass: identification and reconstruction of CRISPR from unassembled metagenomic data. Nucleic Acids Res (2013) 0.98

Bioinformatics for the Human Microbiome Project. PLoS Comput Biol (2012) 0.97

A Microbial Metagenome (Leucobacter sp.) in Caenorhabditis Whole Genome Sequences. Bioinform Biol Insights (2013) 0.96

Functional metagenomic profiling of intestinal microbiome in extreme ageing. Aging (Albany NY) (2013) 0.95

Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis. PLoS One (2016) 0.94

Mapping the inner workings of the microbiome: genomic- and metagenomic-based study of metabolism and metabolic interactions in the human microbiome. Cell Metab (2014) 0.94

The role of the intestinal microbiota in type 1 diabetes mellitus. Nat Rev Endocrinol (2016) 0.93

NeSSM: a Next-generation Sequencing Simulator for Metagenomics. PLoS One (2013) 0.93

PhyloPythiaS+: a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes. PeerJ (2016) 0.92

Comparing memory-efficient genome assemblers on stand-alone and cloud infrastructures. PLoS One (2013) 0.92

Xander: employing a novel method for efficient gene-targeted metagenomic assembly. Microbiome (2015) 0.92

Recovering complete and draft population genomes from metagenome datasets. Microbiome (2016) 0.91

Discovery of novel rhabdoviruses in the blood of healthy individuals from West Africa. PLoS Negl Trop Dis (2015) 0.91

Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases. ISME J (2015) 0.91

Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing. Biochem Biophys Res Commun (2015) 0.90

Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community. BMC Genomics (2015) 0.90

The green impact: bacterioplankton response toward a phytoplankton spring bloom in the southern North Sea assessed by comparative metagenomic and metatranscriptomic approaches. Front Microbiol (2015) 0.90

Next-Generation Sequencing: A Review of Technologies and Tools for Wound Microbiome Research. Adv Wound Care (New Rochelle) (2015) 0.89

The draft assembly of the radically organized Stylonychia lemnae macronuclear genome. Genome Biol Evol (2014) 0.89

The presence of nitrate dramatically changed the predominant microbial community in perchlorate degrading cultures under saline conditions. BMC Microbiol (2014) 0.89

The human gut chip "HuGChip", an explorative phylogenetic microarray for determining gut microbiome diversity at family level. PLoS One (2013) 0.88

Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial). Front Microbiol (2015) 0.88

De novo reconstruction of consensus master genomes of plant RNA and DNA viruses from siRNAs. PLoS One (2014) 0.88

Identification and Resolution of Microdiversity through Metagenomic Sequencing of Parallel Consortia. Appl Environ Microbiol (2015) 0.88

Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes. Sci Rep (2016) 0.87

Characterization of the Gut Microbiome Using 16S or Shotgun Metagenomics. Front Microbiol (2016) 0.87

Comparative metagenomics of anode-associated microbiomes developed in rice paddy-field microbial fuel cells. PLoS One (2013) 0.87

Virome genomics: a tool for defining the human virome. Curr Opin Microbiol (2013) 0.86

Assembly of viral genomes from metagenomes. Front Microbiol (2014) 0.86

Metagenomic resolution of microbial functions in deep-sea hydrothermal plumes across the Eastern Lau Spreading Center. ISME J (2015) 0.86

Minimally destructive sampling of type specimens of Pyropia (Bangiales, Rhodophyta) recovers complete plastid and mitochondrial genomes. Sci Rep (2014) 0.86

Unravelling core microbial metabolisms in the hypersaline microbial mats of Shark Bay using high-throughput metagenomics. ISME J (2015) 0.84

Bacterial endosymbiosis in a chordate host: long-term co-evolution and conservation of secondary metabolism. PLoS One (2013) 0.84

An extended genovo metagenomic assembler by incorporating paired-end information. PeerJ (2013) 0.84

MetaVelvet-SL: an extension of the Velvet assembler to a de novo metagenomic assembler utilizing supervised learning. DNA Res (2014) 0.84

Metabolic network modeling of microbial communities. Wiley Interdiscip Rev Syst Biol Med (2015) 0.83

Improved assembly procedure of viral RNA genomes amplified with Phi29 polymerase from new generation sequencing data. Biol Res (2016) 0.83

Metagenomics, Metatranscriptomics, and Metabolomics Approaches for Microbiome Analysis. Evol Bioinform Online (2016) 0.83

Deep Illumina-based shotgun sequencing reveals dietary effects on the structure and function of the fecal microbiome of growing kittens. PLoS One (2014) 0.82

The Road to Metagenomics: From Microbiology to DNA Sequencing Technologies and Bioinformatics. Front Genet (2015) 0.82

SPA: a short peptide assembler for metagenomic data. Nucleic Acids Res (2013) 0.82

Comparison of assembly algorithms for improving rate of metatranscriptomic functional annotation. Microbiome (2014) 0.82

New Genomic Insights into "Entotheonella" Symbionts in Theonella swinhoei: Mixotrophy, Anaerobic Adaptation, Resilience, and Interaction. Front Microbiol (2016) 0.82

Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist's Perspective - Not Only Size Matters! PLoS One (2017) 0.82

Metagenomic Analysis of Hot Springs in Central India Reveals Hydrocarbon Degrading Thermophiles and Pathways Essential for Survival in Extreme Environments. Front Microbiol (2017) 0.81

Metagenomic approach for understanding microbial population from petroleum muck. Genome Announc (2014) 0.81

A scalable and accurate targeted gene assembly tool (SAT-Assembler) for next-generation sequencing data. PLoS Comput Biol (2014) 0.81

Metagenomic surveys of gut microbiota. Genomics Proteomics Bioinformatics (2015) 0.81

Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline. PLoS One (2016) 0.80

Systems-based approaches to unravel multi-species microbial community functioning. Comput Struct Biotechnol J (2014) 0.80

GRASP: guided reference-based assembly of short peptides. Nucleic Acids Res (2014) 0.80

Single-Cell (Meta-)Genomics of a Dimorphic Candidatus Thiomargarita nelsonii Reveals Genomic Plasticity. Front Microbiol (2016) 0.80

MetaSort untangles metagenome assembly by reducing microbial community complexity. Nat Commun (2017) 0.79

An active atmospheric methane sink in high Arctic mineral cryosols. ISME J (2015) 0.79

Detecting epigenetic motifs in low coverage and metagenomics settings. BMC Bioinformatics (2014) 0.79

Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis. Bioinformatics (2015) 0.79

Screening currency notes for microbial pathogens and antibiotic resistance genes using a shotgun metagenomic approach. PLoS One (2015) 0.79

Insights into novel antimicrobial compounds and antibiotic resistance genes from soil metagenomes. Front Microbiol (2014) 0.79

Shotgun Metagenomic Profiles Have a High Capacity To Discriminate Samples of Activated Sludge According to Wastewater Type. Appl Environ Microbiol (2016) 0.78

Quantitative PCR analysis of functional genes in iron-rich microbial mats at an active hydrothermal vent system (Lō'ihi Seamount, Hawai'i). Appl Environ Microbiol (2015) 0.78

Novel Computational Protocols for Functionally Classifying and Characterising Serine Beta-Lactamases. PLoS Comput Biol (2016) 0.78

A gyrovirus infecting a sea bird. Arch Virol (2015) 0.78

Whole-Metagenome-Sequencing-Based Community Profiles of Vitis vinifera L. cv. Corvina Berries Withered in Two Post-harvest Conditions. Front Microbiol (2016) 0.78

High-Throughput Sequencing, a VersatileWeapon to Support Genome-Based Diagnosis in Infectious Diseases: Applications to Clinical Bacteriology. Pathogens (2014) 0.78

Articles cited by this

Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res (2008) 151.16

De novo assembly of human genomes with massively parallel short read sequencing. Genome Res (2009) 45.91

Environmental genome shotgun sequencing of the Sargasso Sea. Science (2004) 45.23

A human gut microbial gene catalogue established by metagenomic sequencing. Nature (2010) 43.63

ABySS: a parallel assembler for short read sequence data. Genome Res (2009) 43.20

An Eulerian path approach to DNA fragment assembly. Proc Natl Acad Sci U S A (2001) 31.51

Genomic mapping by fingerprinting random clones: a mathematical analysis. Genomics (1988) 27.63

Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes. DNA Res (2007) 13.08

A new algorithm for DNA sequence assembly. J Comput Biol (1995) 12.39

ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads. Genome Biol (2009) 6.76

MetaGene: prokaryotic gene finding from environmental genome shotgun sequences. Nucleic Acids Res (2006) 6.64

Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler. PLoS One (2009) 4.60

A bioinformatician's guide to metagenomics. Microbiol Mol Biol Rev (2008) 4.33

Bioinformatics for whole-genome shotgun sequencing of microbial communities. PLoS Comput Biol (2005) 3.39

Parallel, tag-directed assembly of locally derived short sequence reads. Nat Methods (2010) 3.05

Meta-IDBA: a de Novo assembler for metagenomic data. Bioinformatics (2011) 2.46

A novel abundance-based algorithm for binning metagenomic sequences using l-tuples. J Comput Biol (2011) 1.86

Genovo: de novo assembly for metagenomes. J Comput Biol (2011) 1.85

Whole genome assembly of a natto production strain Bacillus subtilis natto from very short read data. BMC Genomics (2010) 1.66

Unsupervised binning of environmental genomic fragments based on an error robust selection of l-mers. BMC Bioinformatics (2010) 1.65

Species abundance distributions and richness estimations in fungal metagenomics--lessons learned from community ecology. Mol Ecol (2010) 1.37

An ORFome assembly approach to metagenomics sequences analysis. J Bioinform Comput Biol (2009) 1.07

The oligonucleotide frequency derived error gradient and its application to the binning of metagenome fragments. BMC Genomics (2009) 1.00

Articles by these authors

Patients with chronic hepatitis C achieving a sustained virological response to peginterferon and ribavirin therapy recover from impaired hepcidin secretion. J Hepatol (2008) 1.85

Hepatic iron accumulation is associated with disease progression and resistance to interferon/ribavirin combination therapy in chronic hepatitis C. J Gastroenterol Hepatol (2007) 1.73

Whole genome assembly of a natto production strain Bacillus subtilis natto from very short read data. BMC Genomics (2010) 1.66

Hepcidin expression in the liver: relatively low level in patients with chronic hepatitis C. Mol Med (2007) 1.59

Chickens possess centromeres with both extended tandem repeats and short non-tandem-repetitive sequences. Genome Res (2010) 1.50

Cognitive deficits in amyotrophic lateral sclerosis evaluated by event-related potentials. Clin Neurophysiol (2009) 1.46

Structures of the thermophilic F1-ATPase epsilon subunit suggesting ATP-regulated arm motion of its C-terminal domain in F1. Proc Natl Acad Sci U S A (2007) 1.30

Prospective evaluation of factors predicting difficulty and pain during sedation-free colonoscopy. Dis Colon Rectum (2005) 1.27

Assessing interactions in the brain with exact low-resolution electromagnetic tomography. Philos Trans A Math Phys Eng Sci (2011) 1.26

Statistical prediction of protein chemical interactions based on chemical structure and mass spectrometry data. Bioinformatics (2007) 1.26

EphA receptor tyrosine kinases interact with co-expressed ephrin-A ligands in cis. Neurosci Res (2004) 1.19

Hepatic oxidative DNA damage correlates with iron overload in chronic hepatitis C patients. Free Radic Biol Med (2006) 1.18

Draxin, a repulsive guidance protein for spinal cord and forebrain commissures. Science (2009) 1.17

A novel association of duodenal atresia, malrotation, segmental dilatation of the colon, and anorectal malformation. Pediatr Surg Int (2009) 1.16

Sedation-free colonoscopy. Dis Colon Rectum (2005) 1.11

Identifying cooperative transcriptional regulations using protein-protein interactions. Nucleic Acids Res (2005) 1.09

Draxin inhibits axonal outgrowth through the netrin receptor DCC. J Neurosci (2011) 1.06

Cessation of gastrulation is mediated by suppression of epithelial-mesenchymal transition at the ventral ectodermal ridge. Development (2007) 1.06

Whole-genome tiling array analysis of Mycobacterium leprae RNA reveals high expression of pseudogenes and noncoding regions. J Bacteriol (2009) 1.06

Accurate identification of orthologous segments among multiple genomes. Bioinformatics (2009) 1.05

High dose intravenous methylprednisolone resolves esophageal stricture resistant to balloon dilatation with intralesional injection of dexamethasone. Pediatr Surg Int (2008) 1.02

Effects of telmisartan on fat distribution in individuals with the metabolic syndrome. J Hypertens (2007) 1.01

Accumulation of 8-nitroguanine in the liver of patients with chronic hepatitis C. J Hepatol (2005) 1.00

Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures. Bioinformatics (2005) 1.00

RNA secondary structural alignment with conditional random fields. Bioinformatics (2005) 0.99

[Quinacrine administration to a patient with Creutzfeldt-Jakob disease who received a cadaveric dura mater graft--an EEG evaluation]. Rinsho Shinkeigaku (2003) 0.98

The crystal structure of a virus-like particle from the hyperthermophilic archaeon Pyrococcus furiosus provides insight into the evolution of viruses. J Mol Biol (2007) 0.97

Murasaki: a fast, parallelizable algorithm to find anchors from multiple genomes. PLoS One (2010) 0.97

Chaperone therapy for neuronopathic lysosomal diseases: competitive inhibitors as chemical chaperones for enhancement of mutant enzyme activities. Perspect Medicin Chem (2009) 0.96

Binding of adiponectin and C1q in human serum, and clinical significance of the measurement of C1q-adiponectin / total adiponectin ratio. Metabolism (2012) 0.96

Cdk5/p35 and Rho-kinase mediate ephrin-A5-induced signaling in retinal ganglion cells. Mol Cell Neurosci (2003) 0.96

Brown rice and its component, γ-oryzanol, attenuate the preference for high-fat diet by decreasing hypothalamic endoplasmic reticulum stress in mice. Diabetes (2012) 0.94

The structure of melon necrotic spot virus determined at 2.8 A resolution. Acta Crystallogr Sect F Struct Biol Cryst Commun (2007) 0.92

An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds. BMC Bioinformatics (2012) 0.92

Association of cytokeratin 17 expression with differentiation in oral squamous cell carcinoma. J Cancer Res Clin Oncol (2012) 0.92

Upregulation of transferrin receptor 2 and ferroportin 1 mRNA in the liver of patients with chronic hepatitis C. J Gastroenterol Hepatol (2005) 0.91

Tsukushi controls ectodermal patterning and neural crest specification in Xenopus by direct regulation of BMP4 and X-delta-1 activity. Development (2005) 0.91

Deletion of a chaperonin 60 beta gene leads to cell death in the Arabidopsis lesion initiation 1 mutant. Plant Cell Physiol (2003) 0.91

Ephrin-B3-EphA4 interactions regulate the growth of specific thalamocortical axon populations in vitro. Eur J Neurosci (2002) 0.90

Iron overload is associated with hepatic oxidative damage to DNA in nonalcoholic steatohepatitis. Cancer Epidemiol Biomarkers Prev (2009) 0.90

Neuronal stem/progenitor cells in the vertebrate eye. Dev Growth Differ (2008) 0.90

Ephrin-A2 regulates position-specific cell affinity and is involved in cartilage morphogenesis in the chick limb bud. Dev Biol (2003) 0.89

A Nationwide Survey of Hepatitis E Virus Infection and Chronic Hepatitis E in Liver Transplant Recipients in Japan. EBioMedicine (2015) 0.89

Genome-wide searching with base-pairing kernel functions for noncoding RNAs: computational and expression analysis of snoRNA families in Caenorhabditis elegans. Nucleic Acids Res (2009) 0.89

Tsukushi is required for anterior commissure formation in mouse brain. Biochem Biophys Res Commun (2010) 0.89

Integrating statistical predictions and experimental verifications for enhancing protein-chemical interaction predictions in virtual screening. PLoS Comput Biol (2009) 0.88

COPICAT: a software system for predicting interactions between proteins and chemical compounds. Bioinformatics (2012) 0.88

Value of the apparent diffusion coefficient for quantification of low-grade hepatic encephalopathy. Am J Gastroenterol (2008) 0.87

Evaluation of cingulate gyrus blood flow in patients with liver cirrhosis. Metab Brain Dis (2005) 0.87

γ-Oryzanol protects pancreatic β-cells against endoplasmic reticulum stress in male mice. Endocrinology (2015) 0.86

Morphology of hepatitis C and hepatitis B virus particles as detected by immunogold electron microscopy. Med Mol Morphol (2006) 0.86

Repeat STEP procedure to establish enteral nutrition in an infant with short bowel syndrome. Pediatr Surg Int (2009) 0.86

Tsukushi cooperates with VG1 to induce primitive streak and Hensen's node formation in the chick embryo. Development (2006) 0.86

SAMSCOPE: an OpenGL-based real-time interactive scale-free SAM viewer. Bioinformatics (2012) 0.85

Living donor liver transplantation with hyperreduced left lateral segments. J Pediatr Surg (2008) 0.85

Novel soluble molecule, Akhirin, is expressed in the embryonic chick eyes and exhibits heterophilic cell-adhesion activity. Dev Dyn (2005) 0.85

Chemical chaperone therapy: chaperone effect on mutant enzyme and cellular pathophysiology in β-galactosidase deficiency. Hum Mutat (2011) 0.85

Expression pattern of LINGO-1 in the developing nervous system of the chick embryo. Gene Expr Patterns (2005) 0.85

Tsukushi functions as a Wnt signaling inhibitor by competing with Wnt2b for binding to transmembrane protein Frizzled4. Proc Natl Acad Sci U S A (2011) 0.85

Ephrin-A5 restricts topographically specific arborization in the chick retinotectal projection in vivo. Proc Natl Acad Sci U S A (2002) 0.84

An extended genovo metagenomic assembler by incorporating paired-end information. PeerJ (2013) 0.84

Equarin, a novel soluble molecule expressed with polarity at chick embryonic lens equator, is involved in eye formation. Mech Dev (2003) 0.84

Expression of large tenascin-C splice variants by hepatic stellate cells/myofibroblasts in chronic hepatitis C. J Hepatol (2006) 0.84

Tsukushi modulates Xnr2, FGF and BMP signaling: regulation of Xenopus germ layer formation. PLoS One (2007) 0.84

Tsukushi controls the hair cycle by regulating TGF-β1 signaling. Dev Biol (2012) 0.83

Directed acyclic graph kernels for structural RNA analysis. BMC Bioinformatics (2008) 0.83

Diaphragmatic hernia in infants following living donor liver transplantation: report of three cases and a review of the literature. Pediatr Transplant (2012) 0.82

Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures. BMC Bioinformatics (2011) 0.82

Living donor liver transplantation for glycogen storage disease type Ib. Liver Transpl (2009) 0.82

The role of liver transplantation for congenital extrahepatic portosystemic shunt. Transplantation (2012) 0.82

The Dugesia ryukyuensis database as a molecular resource for studying switching of the reproductive system. Zoolog Sci (2007) 0.82

New features of vault architecture and dynamics revealed by novel refinement using the deformable elastic network approach. Acta Crystallogr D Biol Crystallogr (2013) 0.82

Angioimmunoblastic T-cell lymphoma initially presenting with replacement of bone marrow and peripheral plasmacytosis. Intern Med (2007) 0.81

Identification and characterization of a soluble cadherin-7 isoform produced by alternative splicing. J Biol Chem (2002) 0.81

Reduction of serum HCV RNA titer by bezafibrate therapy in patients with chronic hepatitis C. Am J Gastroenterol (2004) 0.81

DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition. Bioinformatics (2012) 0.81

Usefulness of echo-planar T2* susceptibility-weighted imaging for reliable diagnosis of cerebral venous sinus thrombosis. Intern Med (2008) 0.81

Differences in attitude toward living and postmortal liver donation in the United States, Germany, and Japan. Psychosomatics (2005) 0.81

Influence of phlebotomy on iron-related gene expression levels in the livers of patients with chronic hepatitis C. J Gastroenterol (2007) 0.81

Living donor liver transplantation for congenital absence of the portal vein with situs inversus. Liver Transpl (2009) 0.81

MN-cadherin and its novel variant are transiently expressed in chick embryo spinal cord. Biochem Biophys Res Commun (2005) 0.80

Analysis of a repulsive axon guidance molecule, draxin, on ventrally directed axon projection in chick early embryonic midbrain. Dev Biol (2009) 0.80

Olfactory bulb axonal outgrowth is inhibited by draxin. Biochem Biophys Res Commun (2010) 0.80

Draxin, a repulsive axon guidance protein, is involved in hippocampal development. Neurosci Res (2009) 0.80

Giant cell arteritis associated with lesion of the internal carotid artery: assessment of response to steroid therapy by magnetic resonance angiography. Intern Med (2008) 0.80

Branched-chain amino acid supplementation reduces oxidative stress and prolongs survival in rats with advanced liver cirrhosis. PLoS One (2013) 0.80

Iron reduction therapy by phlebotomy reduces lipid peroxidation and oxidative stress in patients with chronic hepatitis C. J Gastroenterol (2006) 0.80

Draxin, an axon guidance protein, affects chick trunk neural crest migration. Dev Growth Differ (2009) 0.80

Distinct functions of Rac1 and Cdc42 during axon guidance and growth cone morphogenesis in Drosophila. Eur J Neurosci (2004) 0.80

Development of the dorsal ramus of the spinal nerve in the chick embryo: a close relationship between development and expression of guidance cues. Brain Res (2012) 0.79

Draxin is involved in the proper development of the dI3 interneuron in chick spinal cord. Dev Dyn (2010) 0.79

A bicyclic 1-deoxygalactonojirimycin derivative as a novel pharmacological chaperone for GM1 gangliosidosis. Mol Ther (2013) 0.79

[Strategy for surgery in neonates with coexisting congenital heart diseases]. Nihon Geka Gakkai Zasshi (2011) 0.79

Living donor liver transplantation with vena cava reconstruction using a cryopreserved allograft for a pediatric patient with Budd-Chiari syndrome. Transplantation (2009) 0.79

A vault ribonucleoprotein particle exhibiting 39-fold dihedral symmetry. Acta Crystallogr D Biol Crystallogr (2008) 0.79

Equarin is involved as an FGF signaling modulator in chick lens differentiation. Dev Biol (2012) 0.79

Molecular characterization of the ZKT gene encoding a protein with PDZ, K-Box, and TPR motifs in Arabidopsis. Biosci Biotechnol Biochem (2005) 0.79

Successful management of a large fetal mediastinal teratoma complicated by hydrops fetalis. J Pediatr Surg (2010) 0.79