Published in PLoS One on August 07, 2012
SNP discovery in the transcriptome of white Pacific shrimp Litopenaeus vannamei by next generation sequencing. PLoS One (2014) 1.02
New Nuclear SNP Markers Unravel the Genetic Structure and Effective Population Size of Albacore Tuna (Thunnus alalunga). PLoS One (2015) 0.81
Transcriptome analysis of the mud crab (Scylla paramamosain) by 454 deep sequencing: assembly, annotation, and marker discovery. PLoS One (2014) 0.81
SNP discovery in European anchovy (Engraulis encrasicolus, L) by high-throughput transcriptome and genome sequencing. PLoS One (2013) 0.79
Next-generation sequencing-based transcriptome analysis of Helicoverpa armigera Larvae immune-primed with Photorhabdus luminescens TT01. PLoS One (2013) 0.77
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SNP Discovery from Transcriptome of Cashmere Goat Skin. Asian-Australas J Anim Sci (2015) 0.76
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Characterization of the kidney transcriptome of the long-haired mouse Abrothrix hirta (Rodentia, Sigmodontinae) and comparison with that of the olive mouse A. olivacea. PLoS One (2015) 0.75
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Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout. Mol Ecol Resour (2011) 2.02
Local de novo assembly of RAD paired-end contigs using short sequencing reads. PLoS One (2011) 1.98
Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence. Mol Ecol Resour (2009) 1.88
Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library. BMC Genomics (2009) 1.81
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Marine landscapes and population genetic structure of herring (Clupea harengus L.) in the Baltic Sea. Mol Ecol (2005) 1.64
Environmental correlates of population differentiation in Atlantic herring. Evolution (2005) 1.61
Quality assessment parameters for EST-derived SNPs from catfish. BMC Genomics (2008) 1.54
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Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua). BMC Genomics (2010) 1.42
Population genomics of marine fishes: identifying adaptive variation in space and time. Mol Ecol (2009) 1.36
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Ascertainment bias in spatially structured populations: a case study in the eastern fence lizard. J Hered (2007) 1.32
Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey. BMC Genomics (2009) 1.31
EST databases as a source for molecular markers: lessons from Helianthus. J Hered (2006) 1.28
Environmental selection on transcriptome-derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus). Mol Ecol (2012) 1.25
Molecular phylogeny of Clupeiformes (Actinopterygii) inferred from nuclear and mitochondrial DNA sequences. Mol Phylogenet Evol (2006) 1.23
Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids. Mol Ecol Resour (2010) 1.21
Genome-wide SNP detection in the great tit Parus major using high throughput sequencing. Mol Ecol (2010) 1.21
Gene-associated markers provide tools for tackling illegal fishing and false eco-certification. Nat Commun (2012) 1.20
SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing. Mol Ecol Resour (2011) 1.18
Concordance of allozyme and microsatellite differentiation in a marine fish, but evidence of selection at a microsatellite locus. Mol Ecol (2007) 1.12
In vitro vs in silico detected SNPs for the development of a genotyping array: what can we learn from a non-model species? PLoS One (2010) 1.11
Phylogenetic relationships among anchovies, sardines, herrings and their relatives (Clupeiformes), inferred from whole mitogenome sequences. Mol Phylogenet Evol (2006) 1.00
Unlocking the potential of genomic technologies for wildlife forensics. Mol Ecol Resour (2011) 0.97
Novel tools for conservation genomics: comparing two high-throughput approaches for SNP discovery in the transcriptome of the European hake. PLoS One (2011) 0.95
The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing. PLoS One (2007) 9.17
Analyses of pig genomes provide insight into porcine demography and evolution. Nature (2012) 5.58
Second-generation environmental sequencing unmasks marine metazoan biodiversity. Nat Commun (2010) 2.77
Age of cichlids: new dates for ancient lake fish radiations. Mol Biol Evol (2007) 2.50
Temporal analysis of archived samples indicates marked genetic changes in declining North Sea cod (Gadus morhua). Proc Biol Sci (2003) 2.42
Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing. BMC Genomics (2005) 2.34
Speciation in ancient cryptic species complexes: evidence from the molecular phylogeny of Brachionus plicatilis (Rotifera). Evolution (2002) 2.03
All roads lead to home: panmixia of European eel in the Sargasso Sea. Mol Ecol (2011) 2.03
Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper (Pagrus auratus). Proc Natl Acad Sci U S A (2002) 1.94
Qualitative assessment of the diet of European eel larvae in the Sargasso Sea resolved by DNA barcoding. Biol Lett (2010) 1.92
Biocomplexity in a highly migratory pelagic marine fish, Atlantic herring. Proc Biol Sci (2006) 1.90
Spatio-temporal population structuring and genetic diversity retention in depleted Atlantic bluefin tuna of the Mediterranean Sea. Proc Natl Acad Sci U S A (2010) 1.90
Intraspecific sexual selection on a speciation trait, male coloration, in the Lake Victoria cichlid Pundamilia nyererei. Proc Biol Sci (2004) 1.66
Disentangling the effects of evolutionary, demographic, and environmental factors influencing genetic structure of natural populations: Atlantic herring as a case study. Evolution (2009) 1.64
Marine landscapes and population genetic structure of herring (Clupea harengus L.) in the Baltic Sea. Mol Ecol (2005) 1.64
Environmental correlates of population differentiation in Atlantic herring. Evolution (2005) 1.61
Validation of the barcoding gene COI for use in forensic genetic species identification. Forensic Sci Int (2007) 1.53
A missense mutation in the bovine SLC35A3 gene, encoding a UDP-N-acetylglucosamine transporter, causes complex vertebral malformation. Genome Res (2005) 1.52
Power for detecting genetic divergence: differences between statistical methods and marker loci. Mol Ecol (2006) 1.39
Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags. Genome Biol (2007) 1.39
Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered European eel. BMC Genomics (2010) 1.39
Population genomics of marine fishes: identifying adaptive variation in space and time. Mol Ecol (2009) 1.36
Panmixia in the European eel: a matter of time... Proc Biol Sci (2005) 1.31
Competition and phylogeny determine community structure in Müllerian co-mimics. Nature (2011) 1.31
Signatures of diversifying selection in European pig breeds. PLoS Genet (2013) 1.30
Genomic signatures of local directional selection in a high gene flow marine organism; the Atlantic cod (Gadus morhua). BMC Evol Biol (2009) 1.28
A genetic linkage map of the hermaphrodite teleost fish Sparus aurata L. Genetics (2006) 1.26
The first radiation hybrid map of a perch-like fish: the gilthead seabream (Sparus aurata L). Genomics (2006) 1.26
Environmental selection on transcriptome-derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus). Mol Ecol (2012) 1.25
Oceanic fronts in the Sargasso Sea control the early life and drift of Atlantic eels. Proc Biol Sci (2010) 1.24
Gene-associated markers provide tools for tackling illegal fishing and false eco-certification. Nat Commun (2012) 1.20
A ranking system for reference libraries of DNA barcodes: application to marine fish species from Portugal. PLoS One (2012) 1.18
A genomic island linked to ecotype divergence in Atlantic cod. Mol Ecol (2013) 1.16
Long-term effective population sizes, temporal stability of genetic composition and potential for local adaptation in anadromous brown trout (Salmo trutta) populations. Mol Ecol (2002) 1.15
Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring. BMC Genomics (2011) 1.14
The mitochondrial genome of the ascalaphid owlfly Libelloides macaronius and comparative evolutionary mitochondriomics of neuropterid insects. BMC Genomics (2011) 1.14
Mating trials validate the use of DNA barcoding to reveal cryptic speciation of a marine bryozoan taxon. Proc Biol Sci (2007) 1.13
Concordance of allozyme and microsatellite differentiation in a marine fish, but evidence of selection at a microsatellite locus. Mol Ecol (2007) 1.12
Systematic and evolutionary insights derived from mtDNA COI barcode diversity in the Decapoda (Crustacea: Malacostraca). PLoS One (2011) 1.12
Identifying Fishes through DNA Barcodes and Microarrays. PLoS One (2010) 1.11
Genome wide allele frequency fingerprints (GWAFFs) of populations via genotyping by sequencing. PLoS One (2013) 1.11
Genomics in marine monitoring: new opportunities for assessing marine health status. Mar Pollut Bull (2013) 1.09
Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping. BMC Genomics (2011) 1.09
Faunal histories from Holocene ancient DNA. Trends Ecol Evol (2011) 1.08
Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies. BMC Genomics (2009) 1.08
Development and validation of a gene expression oligo microarray for the gilthead sea bream (Sparus aurata). BMC Genomics (2008) 1.04
DNA barcoding reveals cryptic diversity within commercially exploited Indo-Malay Carangidae (Teleosteii: Perciformes). PLoS One (2012) 1.03
A transcriptome map of perennial ryegrass (Lolium perenne L.). BMC Genomics (2012) 1.03
Outlier SNP markers reveal fine-scale genetic structuring across European hake populations (Merluccius merluccius). Mol Ecol (2013) 1.02
Reference-free SNP discovery for the Eurasian beaver from restriction site-associated DNA paired-end data. Mol Ecol (2013) 1.02
A gene-based radiation hybrid map of the gilthead sea bream Sparus aurata refines and exploits conserved synteny with Tetraodon nigroviridis. BMC Genomics (2007) 1.00
An EST-based approach for identifying genes expressed in the intestine and gills of pre-smolt Atlantic salmon (Salmo salar). BMC Genomics (2005) 1.00
Mitogenome sequencing reveals shallow evolutionary histories and recent divergence time between morphologically and ecologically distinct European whitefish (Coregonus spp.). Mol Ecol (2012) 0.99
Population structure and genetic heterogeneity in popular dog breeds in the UK. Vet J (2012) 0.98
Gene flow, effective population size and selection at major histocompatibility complex genes: brown trout in the Hardanger Fjord, Norway. Mol Ecol (2007) 0.96
Evaluation of approaches for identifying population informative markers from high density SNP chips. BMC Genet (2011) 0.96
Feline mammary tumours in comparative oncology. J Dairy Res (2005) 0.95
Novel tools for conservation genomics: comparing two high-throughput approaches for SNP discovery in the transcriptome of the European hake. PLoS One (2011) 0.95
Microarray expression profiles of 20.000 genes across 23 healthy porcine tissues. PLoS One (2007) 0.95
How will fish that evolved at constant sub-zero temperatures cope with global warming? Notothenioids as a case study. Bioessays (2011) 0.93
A reliable DNA barcode reference library for the identification of the North European shelf fish fauna. Mol Ecol Resour (2014) 0.93
Structured RNAs and synteny regions in the pig genome. BMC Genomics (2014) 0.92
Effects of the total replacement of fish-based diet with plant-based diet on the hepatic transcriptome of two European sea bass (Dicentrarchus labrax) half-sibfamilies showing different growth rates with the plant-based diet. BMC Genomics (2011) 0.91
Prebiotic effects of arabinoxylan oligosaccharides on juvenile Siberian sturgeon (Acipenser baerii) with emphasis on the modulation of the gut microbiota using 454 pyrosequencing. FEMS Microbiol Ecol (2013) 0.90