A consensus microsatellite-based linkage map for the hermaphroditic bay scallop (Argopecten irradians) and its application in size-related QTL analysis.

PubWeight™: 0.82‹?›

🔗 View Article (PMC 3473060)

Published in PLoS One on October 16, 2012

Authors

Hongjun Li1, Xiao Liu, Guofan Zhang

Author Affiliations

1: Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.

Articles cited by this

Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Hum Genet (1989) 62.23

MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered (2002) 17.48

Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. Genetics (1994) 6.14

Segregation distorters. Annu Rev Genet (1991) 3.90

A maximum likelihood method for estimating genome length using genetic linkage data. Genetics (1991) 3.32

Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in estimates of QTL effects. Genetics (1998) 3.20

A genetic map in the Mimulus guttatus species complex reveals transmission ratio distortion due to heterospecific interactions. Genetics (2001) 2.66

A second-generation genetic linkage map of tilapia (Oreochromis spp.). Genetics (2005) 2.20

A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns. BMC Genomics (2011) 2.03

A linkage map of Atlantic salmon (Salmo salar) reveals an uncommonly large difference in recombination rate between the sexes. Anim Genet (2004) 2.00

Nonrandom segregation during meiosis: the unfairness of females. Mamm Genome (2001) 1.94

Hybridization, introgression, and linkage evolution. Plant Mol Biol (2000) 1.92

The nature of quantitative genetic variation revisited: lessons from Drosophila bristles. Bioessays (1996) 1.89

High genetic load in the Pacific oyster Crassostrea gigas. Genetics (2001) 1.65

A high-resolution linkage map for comparative genome analysis and QTL fine mapping in Asian seabass, Lates calcarifer. BMC Genomics (2011) 1.53

A linkage map based on information from four F2 populations of maize (Zea mays L.). Theor Appl Genet (1991) 1.50

A genetic linkage map for Arctic char (Salvelinus alpinus): evidence for higher recombination rates and segregation distortion in hybrid versus pure strain mapping parents. Genome (2004) 1.43

His and hers recombinational hotspots. Trends Genet (1991) 1.33

Chromosomal rearrangement in pectinidae revealed by rRNA loci and implications for bivalve evolution. Biol Bull (2004) 1.33

Linkage maps of microsatellite DNA markers for the Pacific oyster Crassostrea gigas. Genetics (2004) 1.21

Inheritance of juvenile shell colour of the oyster drill Urosalpinx cinerea. Nature (1975) 1.12

A synthetic rainbow trout linkage map provides new insights into the salmonid whole genome duplication and the conservation of synteny among teleosts. BMC Genet (2012) 1.08

AFLP-based genetic linkage maps of the pacific oyster Crassostrea gigas Thunberg. Mar Biotechnol (NY) (2003) 1.06

A gene-based SNP linkage map for pacific white shrimp, Litopenaeus vannamei. Anim Genet (2009) 1.05

Detection of growth-related QTL in turbot (Scophthalmus maximus). BMC Genomics (2011) 1.04

Genetic mapping of QTLs controlling vegetative propagation in Eucalyptus grandis and E. urophylla using a pseudo-testcross strategy and RAPD markers. Theor Appl Genet (1995) 1.02

A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus). BMC Genomics (2010) 1.02

Genetic linkage map of the eastern oyster Crassostrea virginica Gmelin. Biol Bull (2003) 1.01

Construction of microsatellite-based linkage maps and identification of size-related quantitative trait loci for Zhikong scallop (Chlamys farreri). Anim Genet (2009) 1.00

Identification of host-defense genes and development of microsatellite markers from ESTs of hard clam Meretrix meretrix. Mol Biol Rep (2010) 0.97

Identification and verification of QTL associated with growth traits in two genetic backgrounds of Barramundi (Lates calcarifer). Anim Genet (2007) 0.96

Microsatellite marker development and analysis in the eastern oyster (Crassostrea virginica): confirmation of null alleles and non-Mendelian segregation ratios. J Hered (2004) 0.96

QTL for resistance to summer mortality and OsHV-1 load in the Pacific oyster (Crassostrea gigas). Anim Genet (2010) 0.92

A first-generation genetic linkage map of the European flat oyster Ostrea edulis (L.) based on AFLP and microsatellite markers. Anim Genet (2007) 0.84

AFLP-based genetic linkage maps of the blue mussel (Mytilus edulis). Anim Genet (2007) 0.82

Combining two-stage testing and interval mapping strategies to detect QTL for resistance to bonamiosis in the european flat oyster Ostrea edulis. Mar Biotechnol (NY) (2009) 0.81

A microsatellite linkage map of the blacklip abalone, Haliotis rubra. Anim Genet (2006) 0.80

Identification and mapping of amplified fragment length polymorphism markers linked to shell color in bay scallop, Argopecten irradians irradians (Lamarck, 1819). Mar Biotechnol (NY) (2006) 0.79

Development and linkage analysis of 104 new microsatellite markers for bay scallop (Argopecten irradians). Mar Biotechnol (NY) (2011) 0.77

Articles by these authors

The sequence and de novo assembly of the giant panda genome. Nature (2009) 15.76

Sequencing of 50 human exomes reveals adaptation to high altitude. Science (2010) 11.27

An abundance of rare functional variants in 202 drug target genes sequenced in 14,002 people. Science (2012) 7.94

Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor. Cell (2012) 5.62

Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants. Nat Genet (2010) 5.44

The oyster genome reveals stress adaptation and complexity of shell formation. Nature (2012) 5.30

A 3D digital atlas of C. elegans and its application to single-cell analyses. Nat Methods (2009) 5.29

BIPES, a cost-effective high-throughput method for assessing microbial diversity. ISME J (2010) 4.52

Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet (2012) 4.07

Frequent mutations of genes encoding ubiquitin-mediated proteolysis pathway components in clear cell renal cell carcinoma. Nat Genet (2011) 3.66

Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol (2004) 3.17

Straightening Caenorhabditis elegans images. Bioinformatics (2007) 3.13

Interleukin-17 signaling in inflammatory, Kupffer cells, and hepatic stellate cells exacerbates liver fibrosis in mice. Gastroenterology (2012) 2.58

Comprehensive comparison of three commercial human whole-exome capture platforms. Genome Biol (2011) 2.15

Whole-genome sequencing identifies recurrent mutations in hepatocellular carcinoma. Genome Res (2013) 2.12

The Relationship Between Helicobacter pylori Infection and Open-Angle Glaucoma: A Meta-Analysis. Invest Ophthalmol Vis Sci (2015) 1.94

Beating crystallization in glass-forming metals by millisecond heating and processing. Science (2011) 1.86

Association between variants of PRDM1 and NDP52 and Crohn's disease, based on exome sequencing and functional studies. Gastroenterology (2013) 1.83

The Wilms tumor gene, Wt1, is critical for mouse spermatogenesis via regulation of sertoli cell polarity and is associated with non-obstructive azoospermia in humans. PLoS Genet (2013) 1.52

EEG correlates of time-varying BOLD functional connectivity. Neuroimage (2013) 1.48

Association between two polymorphisms of ABCB1 and breast cancer risk in the current studies: a meta-analysis. Breast Cancer Res Treat (2010) 1.46

Association between polymorphisms of the ataxia telangiectasia mutated gene and breast cancer risk: evidence from the current studies. Breast Cancer Res Treat (2010) 1.40

Pre-ART levels of inflammation and coagulation markers are strong predictors of death in a South African cohort with advanced HIV disease. PLoS One (2012) 1.31

Health risks of smoking compared to Swedish snus. Inhal Toxicol (2005) 1.28

Hepatitis C virus infections and genotypes in China. Hepatobiliary Pancreat Dis Int (2002) 1.25

Single-cell sequencing analysis characterizes common and cell-lineage-specific mutations in a muscle-invasive bladder cancer. Gigascience (2012) 1.18

IL-37 ameliorates the inflammatory process in psoriasis by suppressing proinflammatory cytokine production. J Immunol (2014) 1.11

Genome and transcriptome analyses provide insight into the euryhaline adaptation mechanism of Crassostrea gigas. PLoS One (2013) 1.11

Functional comparisons of visual arrestins in rod photoreceptors of transgenic mice. Invest Ophthalmol Vis Sci (2007) 1.10

Simultaneous recognition and segmentation of cells: application in C.elegans. Bioinformatics (2011) 1.09

Functional identification of a hydroxyproline-o-galactosyltransferase specific for arabinogalactan protein biosynthesis in Arabidopsis. J Biol Chem (2013) 1.09

Quantitative imaging of energy expenditure in human brain. Neuroimage (2012) 1.09

CD40 ligation reverses T cell tolerance in acute myeloid leukemia. J Clin Invest (2013) 1.04

Experimental realization of a circuit-based broadband illusion-optics analogue. Phys Rev Lett (2010) 1.03

HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics (2013) 1.02

Zinc fingers and homeoboxes 2 inhibits hepatocellular carcinoma cell proliferation and represses expression of Cyclins A and E. Gastroenterology (2012) 1.00

Transcriptome analysis reveals a rich gene set related to innate immunity in the Eastern oyster (Crassostrea virginica). Mar Biotechnol (NY) (2013) 0.99

A chicken ovalbumin upstream promoter transcription factor I (COUP-TFI) complex represses expression of the gene encoding tumor necrosis factor alpha-induced protein 8 (TNFAIP8). J Biol Chem (2008) 0.99

Unusual conservation of mitochondrial gene order in Crassostrea oysters: evidence for recent speciation in Asia. BMC Evol Biol (2010) 0.98

Optically active chiral CuO "nanoflowers". J Am Chem Soc (2014) 0.96

Validation of housekeeping genes as internal controls for studying gene expression during Pacific oyster (Crassostrea gigas) development by quantitative real-time PCR. Fish Shellfish Immunol (2013) 0.96

Global detection and analysis of volatile components from sun-dried and sulfur-fumigated herbal medicine by comprehensive two-dimensional gas chromatography/time-of-flight mass spectrometry. Analyst (2012) 0.94

Increased Tim-3 expression on peripheral lymphocytes from patients with rheumatoid arthritis negatively correlates with disease activity. Clin Immunol (2010) 0.94

Distribution and translocation of selenium from soil to grain and its speciation in paddy rice (Oryza sativa L.). Environ Sci Technol (2010) 0.93

Expression of epidermal growth factor receptor is an independent prognostic factor for esophageal squamous cell carcinoma. World J Surg Oncol (2013) 0.92

Screening and analysis of the multiple absorbed bioactive components and metabolites of Baihe Zhimu Tang by the metabolic fingerprinting technique and liquid chromatography/diode array detection-electrospray ionization-mass spectrometry. Pharmacogn Mag (2011) 0.92

Role and interrelationship of Gα protein, hydrogen peroxide, and nitric oxide in ultraviolet B-induced stomatal closure in Arabidopsis leaves. Plant Physiol (2013) 0.92

[Status of perfluorochemicals in adult serum and umbilical blood in Shenyang]. Wei Sheng Yan Jiu (2004) 0.91

Suppression of WC-independent frequency transcription by RCO-1 is essential for Neurospora circadian clock. Proc Natl Acad Sci U S A (2013) 0.91

Oyster Shell Proteins Originate from Multiple Organs and Their Probable Transport Pathway to the Shell Formation Front. PLoS One (2013) 0.91

Experimental study of detection of nodules showing ground-glass opacity and radiation dose by using anthropomorphic chest phantom: digital tomosynthesis and multidetector CT. J Comput Assist Tomogr (2012) 0.91

Gene discovery, comparative analysis and expression profile reveal the complexity of the Crassostrea gigas apoptosis system. Dev Comp Immunol (2011) 0.91

Monosodium urate monohydrate crystal-recruited noninflammatory monocytes differentiate into M1-like proinflammatory macrophages in a peritoneal murine model of gout. Arthritis Rheum (2011) 0.90

A sensitive liquid chromatography-mass spectrometry method for simultaneous determination of two active chromones from Saposhnikovia root in rat plasma and urine. J Chromatogr B Analyt Technol Biomed Life Sci (2008) 0.90

TPX2 Level Correlates with Hepatocellular Carcinoma Cell Proliferation, Apoptosis, and EMT. Dig Dis Sci (2015) 0.90

Genetic aberrations in imatinib-resistant dermatofibrosarcoma protuberans revealed by whole genome sequencing. PLoS One (2013) 0.89

Risk factors for ventilator-associated pneumonia in the neonatal intensive care unit: a meta-analysis of observational studies. Eur J Pediatr (2014) 0.89

Genome-wide and single-base resolution DNA methylomes of the Pacific oyster Crassostrea gigas provide insight into the evolution of invertebrate CpG methylation. BMC Genomics (2014) 0.89

Putative calcium channels CchA and MidA play the important roles in conidiation, hyphal polarity and cell wall components in Aspergillus nidulans. PLoS One (2012) 0.89

Genistein-induced mitotic arrest of gastric cancer cells by downregulating KIF20A, a proteomics study. Proteomics (2012) 0.89

Full genomic analysis of human rotavirus strain TB-Chen isolated in China. Virology (2008) 0.89

Cloning, characterization and expression of two new polyphenol oxidase cDNAs from Agaricus bisporus. Biotechnol Lett (2010) 0.89

A Crassostrea gigas Toll-like receptor and comparative analysis of TLR pathway in invertebrates. Fish Shellfish Immunol (2010) 0.88

Inferring direct regulatory targets from expression and genome location analyses: a comparison of transcription factor deletion and overexpression. BMC Genomics (2006) 0.88

3-Methyladenine induces cell death and its interaction with chemotherapeutic drugs is independent of autophagy. Biochem Biophys Res Commun (2013) 0.88

(4-[6-(4-isopropoxyphenyl)pyrazolo [1,5-a]pyrimidin-3-yl] quinoline) is a novel inhibitor of autophagy. Br J Pharmacol (2014) 0.88

Coordinated regulation of transcription factor Bcl11b activity in thymocytes by the mitogen-activated protein kinase (MAPK) pathways and protein sumoylation. J Biol Chem (2012) 0.87

In vitro and in vivo anti-tumor activities of anti-EGFR single-chain variable fragment fused with recombinant gelonin toxin. J Cancer Res Clin Oncol (2012) 0.86

Exome capture from saliva produces high quality genomic and metagenomic data. BMC Genomics (2014) 0.86

A preliminary genetic linkage map of the Pacific abalone Haliotis discus hannai Ino. Mar Biotechnol (NY) (2006) 0.85

Molecular epidemiology of outbreak-associated pseudorabies virus (PRV) strains in central China. Virus Genes (2015) 0.85

Correlation of SRSF1 and PRMT1 expression with clinical status of pediatric acute lymphoblastic leukemia. J Hematol Oncol (2012) 0.85

Contact- and agonist-regulated microvesiculation of human platelets. Thromb Haemost (2013) 0.85

Facile synthesis and optical properties of polymer-laced ZnO-Au hybrid nanoparticles. Nanoscale Res Lett (2014) 0.85

PUFA biosynthesis pathway in marine scallop Chlamys nobilis Reeve. J Agric Food Chem (2014) 0.84

Bone morphogenetic protein-4 contributes to the down-regulation of Kv4.3 K+ channels in pathological cardiac hypertrophy. Biochem Biophys Res Commun (2013) 0.84

An integrated tool to study MHC region: accurate SNV detection and HLA genes typing in human MHC region using targeted high-throughput sequencing. PLoS One (2013) 0.84

Facile synthesis of amino-silane modified superparamagnetic Fe3O4 nanoparticles and application for lipase immobilization. J Biotechnol (2010) 0.84

Study on chemical fingerprinting of crude and processed Atractylodes macrocephala from different locations in Zhejiang province by reversed-phase high-performance liquid chromatography coupled with hierarchical cluster analysis. Pharmacogn Mag (2012) 0.84

Direct glycosylation of bioactive small molecules with glycosyl iodide and strained olefin as acid scavenger. J Org Chem (2014) 0.84

Effects of CO2 laser pretreatment on drought stress resistance in wheat. J Photochem Photobiol B (2007) 0.84

Increased expression of T cell immunoglobulin- and mucin domain-containing molecule-3 on natural killer cells in atherogenesis. Atherosclerosis (2012) 0.84

The intracellular transport and secretion of calumenin-1/2 in living cells. PLoS One (2012) 0.84

Digital gene expression analysis of corky split vein caused by boron deficiency in 'Newhall' Navel Orange (Citrus sinensis Osbeck) for selecting differentially expressed genes related to vascular hypertrophy. PLoS One (2013) 0.84

Brief report: Granulocyte-macrophage colony-stimulating factor drives monosodium urate monohydrate crystal-induced inflammatory macrophage differentiation and NLRP3 inflammasome up-regulation in an in vivo mouse model. Arthritis Rheumatol (2014) 0.84

Expression of a GALACTINOL SYNTHASE gene is positively associated with desiccation tolerance of Brassica napus seeds during development. J Plant Physiol (2011) 0.83

Identification of short hairpin RNA targeting foot-and-mouth disease virus with transgenic bovine fetal epithelium cells. PLoS One (2012) 0.83

Cloning and expression analysis of a HSP70 gene from Pacific abalone (Haliotis discus hannai). Fish Shellfish Immunol (2006) 0.83

Effect of emodin on endoplasmic reticulum stress in rats with severe acute pancreatitis. Inflammation (2013) 0.83

Sequence variability of the 5' UTR in isolates of hepatitis C virus in China. Hepatobiliary Pancreat Dis Int (2002) 0.83

Identification of antituberculosis agents that target ribosomal protein interactions using a yeast two-hybrid system. Proc Natl Acad Sci U S A (2012) 0.83

Da-Huang-Fu-Zi-Tang attenuates liver injury in rats with severe acute pancreatitis. J Ethnopharmacol (2013) 0.82

Heavy metal concentrations in surface sediments and Manila clams (Ruditapes philippinarum) from the Dalian coast, China after the Dalian port oil spill. Biol Trace Elem Res (2012) 0.81

Analgesic and anti-inflammatory activity and pharmacokinetics of alkaloids from seeds of Strychnos nux-vomica after transdermal administration: effect of changes in alkaloid composition. J Ethnopharmacol (2011) 0.81

[Quick identification of sun-dried and sulfur-fumigated angelicae sinensis radix by Fourier transform infrared spectroscopy]. Zhongguo Zhong Yao Za Zhi (2012) 0.81

Deep sequencing identifies regulated small RNAs in Dugesia japonica. Mol Biol Rep (2013) 0.81

Ultra high performance liquid chromatography with tandem mass spectrometry method for the determination of tetrandrine and fangchinoline in rat plasma after oral administration of Fangji Huangqi Tang and Stephania tetrandra S. Moore extracts. J Sep Sci (2015) 0.81

Two new diterpenoids from cell cultures of Salvia miltiorrhiza. Chem Pharm Bull (Tokyo) (2013) 0.81