Published in BMC Bioinformatics on September 07, 2012
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLoS One (2014) 4.94
Plasmodium malariae and P. ovale genomes provide insights into malaria parasite evolution. Nature (2017) 2.14
The African Turquoise Killifish Genome Provides Insights into Evolution and Genetic Architecture of Lifespan. Cell (2015) 1.86
FGAP: an automated gap closing tool. BMC Res Notes (2014) 1.18
Analysis of plant microbe interactions in the era of next generation sequencing technologies. Front Plant Sci (2014) 1.15
The genomic basis of parasitism in the Strongyloides clade of nematodes. Nat Genet (2016) 1.09
Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria. Nat Commun (2016) 1.06
Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction. Nat Genet (2014) 1.02
Genome Analysis of the First Extensively Drug-Resistant (XDR) Mycobacterium tuberculosis in Malaysia Provides Insights into the Genetic Basis of Its Biology and Drug Resistance. PLoS One (2015) 0.93
Genomics of ecological adaptation in cactophilic Drosophila. Genome Biol Evol (2014) 0.91
Palaeosymbiosis revealed by genomic fossils of Wolbachia in a strongyloidean nematode. PLoS Genet (2014) 0.90
Genome sequence and description of the mosquitocidal and heavy metal tolerant strain Lysinibacillus sphaericus CBAM5. Stand Genomic Sci (2015) 0.87
The genome of Onchocerca volvulus, agent of river blindness. Nat Microbiol (2016) 0.83
Genome Sequence of Lactococcus lactis subsp. lactis NCDO 2118, a GABA-Producing Strain. Genome Announc (2014) 0.83
Recombination in Streptococcus pneumoniae Lineages Increase with Carriage Duration and Size of the Polysaccharide Capsule. MBio (2016) 0.83
Faustoviruses: Comparative Genomics of New Megavirales Family Members. Front Microbiol (2016) 0.81
Genomic Insight into the Host-Endosymbiont Relationship of Endozoicomonas montiporae CL-33(T) with its Coral Host. Front Microbiol (2016) 0.80
Konnector v2.0: pseudo-long reads from paired-end sequencing data. BMC Med Genomics (2015) 0.80
The Complete Genome of Brucella Suis 019 Provides Insights on Cross-Species Infection. Genes (Basel) (2016) 0.80
The genome sequence of the Antarctic bullhead notothen reveals evolutionary adaptations to a cold environment. Genome Biol (2014) 0.80
The 474-Kilobase-Pair Complete Genome Sequence of CeV-01B, a Virus Infecting Haptolina (Chrysochromulina) ericina (Prymnesiophyceae). Genome Announc (2015) 0.79
Chimera: a Bioconductor package for secondary analysis of fusion products. Bioinformatics (2014) 0.79
Genome Sequence of the Clinical Isolate Staphylococcus aureus subsp. aureus Strain UAMS-1. Genome Announc (2015) 0.79
Developmental Cycle and Genome Analysis of "Rubidus massiliensis," a New Vermamoeba vermiformis Pathogen. Front Cell Infect Microbiol (2016) 0.79
Pseudo-Sanger sequencing: massively parallel production of long and near error-free reads using NGS technology. BMC Genomics (2013) 0.79
Genome sequencing and analysis of Salmonella enterica serovar Typhi strain CR0063 representing a carrier individual during an outbreak of typhoid fever in Kelantan, Malaysia. Gut Pathog (2012) 0.79
Use of Multiple Sequencing Technologies To Produce a High-Quality Genome of the Fungus Pseudogymnoascus destructans, the Causative Agent of Bat White-Nose Syndrome. Genome Announc (2016) 0.79
Environmental Breviatea harbour mutualistic Arcobacter epibionts. Nature (2016) 0.78
Kaumoebavirus, a New Virus That Clusters with Faustoviruses and Asfarviridae. Viruses (2016) 0.77
Evidence of a new metabolic capacity in an emerging diarrheal pathogen: lessons from the draft genomes of Vibrio fluvialis strains PG41 and I21563. Gut Pathog (2013) 0.77
A pipeline for completing bacterial genomes using in silico and wet lab approaches. BMC Genomics (2015) 0.77
Insights into Ongoing Evolution of the Hexachlorocyclohexane Catabolic Pathway from Comparative Genomics of Ten Sphingomonadaceae Strains. G3 (Bethesda) (2015) 0.77
The Ditylenchus destructor genome provides new insights into the evolution of plant parasitic nematodes. Proc Biol Sci (2016) 0.76
Genomic landscape of extended-spectrum β-lactamase resistance in Escherichia coli from an urban African setting. J Antimicrob Chemother (2017) 0.75
Draft Genome Sequence of a Plant Growth-Promoting Rhizobacterium, Serratia fonticola Strain AU-P3(3). Genome Announc (2013) 0.75
Vibrio cholerae Serogroup O139: Isolation from Cholera Patients and Asymptomatic Household Family Members in Bangladesh between 2013 and 2014. PLoS Negl Trop Dis (2015) 0.75
Genome Sequence of Citrobacter sp. CtB7.12, Isolated from the Gut of the Desert Subterranean Termite Heterotermes aureus. Genome Announc (2015) 0.75
Chloroplast Genome Analysis of Resurrection Tertiary Relict Haberlea rhodopensis Highlights Genes Important for Desiccation Stress Response. Front Plant Sci (2017) 0.75
Five Complete Chloroplast Genome Sequences from Diospyros: Genome Organization and Comparative Analysis. PLoS One (2016) 0.75
On the complexity of Minimum Path Cover with Subpath Constraints for multi-assembly. BMC Bioinformatics (2014) 0.75
Draft Genome Sequence of Robinsoniella peoriensis 6600698, a Confounder of Clostridium difficile Diagnosis. Genome Announc (2016) 0.75
Phylogenetic Analysis of Invasive Serotype 1 Pneumococcus in South Africa, 1989 to 2013. J Clin Microbiol (2016) 0.75
Draft Whole-Genome Sequences of Three Lactobacillus plantarum Food Isolates. Genome Announc (2016) 0.75
Draft Genome Sequence of Plant Growth-Promoting Rhizobacterium Pantoea sp. Strain AS-PWVM4. Genome Announc (2013) 0.75
Comparative genomics of Vibrio campbellii strains and core species of the Vibrio Harveyi clade. Sci Rep (2017) 0.75
Short tandem repeats, segmental duplications, gene deletion, and genomic instability in a rapidly diversified immune gene family. BMC Genomics (2016) 0.75
Genome Sequence of Rhodococcus sp. Strain PML026, a Trehalolipid Biosurfactant Producer and Biodegrader of Oil and Alkanes. Genome Announc (2015) 0.75
Genome Sequence of the Historical Clinical Isolate Burkholderia pseudomallei PHLS 6. Genome Announc (2016) 0.75
Draft Genome Sequences for Five Strains of Trabulsiella odontotermitis, Isolated from Heterotermes sp. Termite Gut. Genome Announc (2015) 0.75
Draft Genome Sequence of Bacillus amyloliquefaciens Strain RHNK22, Isolated from Rhizosphere with Biosurfactant (Surfactin, Iturin, and Fengycin) and Antifungal Activity. Genome Announc (2016) 0.75
Genome Sequencing of the Pyruvate-producing Strain Candida glabrata CCTCC M202019 and Genomic Comparison with Strain CBS138. Sci Rep (2016) 0.75
Draft Genome Sequence of Campylobacter jejuni 11168H. Genome Announc (2017) 0.75
Draft Genome Sequence of Plant-Growth-Promoting Rhizobacterium Serratia fonticola Strain AU-AP2C, Isolated from the Pea Rhizosphere. Genome Announc (2013) 0.75
Genomic Analyses of Cladophialophora bantiana, a Major Cause of Cerebral Phaeohyphomycosis Provides Insight into Its Lifestyle, Virulence and Adaption in Host. PLoS One (2016) 0.75
Draft Genome Sequence of Tritrichomonas foetus Strain K. Genome Announc (2017) 0.75
Genome Sequence of the Edible Cultivated Mushroom Lentinula edodes (Shiitake) Reveals Insights into Lignocellulose Degradation. PLoS One (2016) 0.75
Genome Report: Identification and Validation of Antigenic Proteins from Pajaroellobacter abortibovis Using De Novo Genome Sequence Assembly and Reverse Vaccinology. G3 (Bethesda) (2016) 0.75
Genome Sequence of "Candidatus Carsonella ruddii" Strain BC, a Nutritional Endosymbiont of Bactericera cockerelli. Genome Announc (2017) 0.75
Genome sequence of the ectophytic fungus Ramichloridium luteum reveals unique evolutionary adaptations to plant surface niche. BMC Genomics (2017) 0.75
Draft Genome Sequences of the Multiresistant Escherichia coli C20 Strain, Isolated from Domestic Chicken Gut Microbiota. Genome Announc (2017) 0.75
The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience (2017) 0.75
An outbreak in intravenous drug users due to USA300 Latin-American variant community-acquired methicillin-resistant Staphylococcus aureus in France as early as 2007. Eur J Clin Microbiol Infect Dis (2017) 0.75
Host modification of a bacterial quorum-sensing signal induces a phenotypic switch in bacterial symbionts. Proc Natl Acad Sci U S A (2017) 0.75
Identification of common molecular subsequences. J Mol Biol (1981) 130.53
De novo assembly of human genomes with massively parallel short read sequencing. Genome Res (2009) 45.91
High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proc Natl Acad Sci U S A (2010) 22.97
Assembling millions of short DNA sequences using SSAKE. Bioinformatics (2006) 18.71
SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. Genome Res (2007) 16.20
The sequence and de novo assembly of the giant panda genome. Nature (2009) 15.76
FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics (2011) 13.71
Quake: quality-aware detection and correction of sequencing errors. Genome Biol (2010) 12.52
GAGE: A critical evaluation of genome assemblies and assembly algorithms. Genome Res (2012) 11.33
Limitations of next-generation genome sequence assembly. Nat Methods (2010) 9.04
Assembly algorithms for next-generation sequencing data. Genomics (2010) 8.56
Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Res (2011) 8.38
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers. Bioinformatics (2011) 7.44
Unlocking short read sequencing for metagenomics. PLoS One (2010) 4.88
Error correction of high-throughput sequencing datasets with non-uniform coverage. Bioinformatics (2011) 3.51
Comparing de novo genome assembly: the long and short of it. PLoS One (2011) 2.37
De novo assembly of short sequence reads. Brief Bioinform (2010) 2.29
Assembling genomic DNA sequences with PHRAP. Curr Protoc Bioinformatics (2007) 2.29
Parametric complexity of sequence assembly: theory and applications to next generation sequencing. J Comput Biol (2009) 2.10
Feature-by-feature--evaluating de novo sequence assembly. PLoS One (2012) 1.83
QSRA: a quality-value guided de novo short read assembler. BMC Bioinformatics (2009) 1.46
A fast hybrid short read fragment assembly algorithm. Bioinformatics (2009) 1.33
rNA: a fast and accurate short reads numerical aligner. Bioinformatics (2011) 1.25
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature (2007) 18.04
The Norway spruce genome sequence and conifer genome evolution. Nature (2013) 4.74
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. Nat Genet (2013) 4.20
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience (2013) 4.11
GAM-NGS: genomic assemblies merger for next generation sequencing. BMC Bioinformatics (2013) 1.72
rNA: a fast and accurate short reads numerical aligner. Bioinformatics (2011) 1.25
The SSR-based molecular profile of 1005 grapevine (Vitis vinifera L.) accessions uncovers new synonymy and parentages, and reveals a large admixture amongst varieties of different geographic origin. Theor Appl Genet (2010) 1.25
High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera. BMC Genomics (2009) 1.05
Model building and model checking for biochemical processes. Cell Biochem Biophys (2003) 1.02
Correction: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera. BMC Genomics (2010) 0.99
BESST--efficient scaffolding of large fragmented assemblies. BMC Bioinformatics (2014) 0.91
Automated FingerPrint Background removal: FPB. BMC Bioinformatics (2009) 0.82
Physical mapping in highly heterozygous genomes: a physical contig map of the Pinot Noir grapevine cultivar. BMC Genomics (2010) 0.81
Structured motifs search. J Comput Biol (2005) 0.81
Fast randomized approximate string matching with succinct hash data structures. BMC Bioinformatics (2015) 0.81
A sense of life: computational and experimental investigations with models of biochemical and evolutionary processes. OMICS (2003) 0.77
Efficient de novo assembly of large and complex genomes by massively parallel sequencing of Fosmid pools. BMC Genomics (2014) 0.76