Published in J Biomol Struct Dyn on November 12, 2012
Structural phylogenomics retrodicts the origin of the genetic code and uncovers the evolutionary impact of protein flexibility. PLoS One (2013) 0.97
Accuracy of Next Generation Sequencing Platforms. Next Gener Seq Appl (2015) 0.80
The early history and emergence of molecular functions and modular scale-free network behavior. Sci Rep (2016) 0.77
Self-Referential Encoding on Modules of Anticodon Pairs-Roots of the Biological Flow System. Life (Basel) (2017) 0.75
Compilation and analysis of eukaryotic POL II promoter sequences. Nucleic Acids Res (1986) 6.68
The pitch of chromatin DNA is reflected in its nucleotide sequence. Proc Natl Acad Sci U S A (1980) 5.88
A computer algorithm for testing potential prokaryotic terminators. Nucleic Acids Res (1984) 4.73
Curved DNA: design, synthesis, and circularization. Proc Natl Acad Sci U S A (1986) 3.72
Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles. Proc Natl Acad Sci U S A (1991) 3.61
Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences. J Mol Biol (1996) 2.86
Estimation of wedge components in curved DNA. Nature (1987) 2.82
Curved DNA. CRC Crit Rev Biochem (1985) 2.78
Sequence-dependent deformational anisotropy of chromatin DNA. Nucleic Acids Res (1980) 2.53
Terminators of transcription with RNA polymerase from Escherichia coli: what they look like and how to find them. J Biomol Struct Dyn (1986) 2.53
The ten helical twist angles of B-DNA. Nucleic Acids Res (1982) 2.02
CURVATURE: software for the analysis of curved DNA. Comput Appl Biosci (1993) 1.64
Linguistics of nucleotide sequences: morphology and comparison of vocabularies. J Biomol Struct Dyn (1986) 1.63
Possibility of nonkinked packing of DNA in chromatin. Proc Natl Acad Sci U S A (1978) 1.58
Open and closed 5 S ribosomal RNA, the only two universal structures encoded in the nucleotide sequences. J Mol Biol (1983) 1.58
Nucleotide sequence-directed mapping of the nucleosomes. Nucleic Acids Res (1983) 1.47
10-11 bp periodicities in complete genomes reflect protein structure and DNA folding. Bioinformatics (1999) 1.27
Applicability of the multiple alignment algorithm for detection of weak patterns: periodically distributed DNA pattern as a study case. Comput Appl Biosci (1996) 1.27
Splice junctions follow a 205-base ladder. Proc Natl Acad Sci U S A (1991) 1.25
Melting of DNA: its study and application as a research method. Biopolymers (1970) 1.24
Closed loops of nearly standard size: common basic element of protein structure. FEBS Lett (2000) 1.23
Sequence-dependent variations of B-DNA structure and protein-DNA recognition. Cold Spring Harb Symp Quant Biol (1983) 1.23
The multiple codes of nucleotide sequences. Bull Math Biol (1989) 1.20
Nucleosomal DNA sequence database. Nucleic Acids Res (1993) 1.18
Sequence-dependent kinks induced in curved DNA. J Biomol Struct Dyn (1990) 1.17
Mammalian retroposons integrate at kinkable DNA sites. J Biomol Struct Dyn (1998) 1.17
Noninteger pitch and nuclease sensitivity of chromatin DNA. Biochemistry (1979) 1.16
Periodical distribution of transcription factor sites in promoter regions and connection with chromatin structure. Proc Natl Acad Sci U S A (1999) 1.16
Analysis of magnetic resonance imaging characteristics and pain in temporomandibular joints with and without degenerative changes of the condyle. Int J Oral Maxillofac Surg (2008) 1.15
Sequence periodicity in complete genomes of archaea suggests positive supercoiling. J Biomol Struct Dyn (1998) 1.09
Non-clonability correlates with genomic instability: a case study of a unique DNA region. J Mol Biol (2001) 1.07
Van der Waals locks: loop-n-lock structure of globular proteins. J Mol Biol (2001) 1.06
CCAAT box revisited: bidirectionality, location and context. J Biomol Struct Dyn (1988) 1.05
Protective nucleosome centering at splice sites as suggested by sequence-directed mapping of the nucleosomes. Gene (1997) 1.04
Unusual frequencies of certain alternating purine-pyrimidine runs in natural DNA sequences: relation to Z-DNA. FEBS Lett (1985) 1.04
Sequence structure of hidden 10.4-base repeat in the nucleosomes of C. elegans. J Biomol Struct Dyn (2008) 1.03
Clustering of thymine dimers in ultraviolet irradiated DNA and the long-range transfer of electronic excitation along the molecule. Nat New Biol (1973) 1.02
Linguistic measure of taxonomic and functional relatedness of nucleotide sequences. J Biomol Struct Dyn (1990) 0.99
[Genetic level of DNA sequences is determined by superposition of many codes]. Mol Biol (Mosk) (1997) 0.99
Nucleosome DNA bendability matrix (C. elegans). J Biomol Struct Dyn (2009) 0.99
DNA bendability--a novel feature in E. coli promoter recognition. J Biomol Struct Dyn (1999) 0.94
mRNA periodical infrastructure complementary to the proof-reading site in the ribosome. J Biomol Struct Dyn (1992) 0.94
Protein folding: looping from hydrophobic nuclei. Proteins (2001) 0.93
Nucleosome positioning pattern derived from oligonucleotide compositions of genomic sequences. J Biomol Struct Dyn (2011) 0.92
Epigenetic nucleosomes: Alu sequences and CG as nucleosome positioning element. J Biomol Struct Dyn (2008) 0.91
Single-base resolution nucleosome mapping on DNA sequences. J Biomol Struct Dyn (2010) 0.91
Loop fold nature of globular proteins. Protein Eng (2001) 0.91
Linguistic complexity of protein sequences as compared to texts of human languages. Biosystems (1996) 0.90
Preferred positions of AA and TT dinucleotides in aligned nucleosomal DNA sequences. J Biomol Struct Dyn (1992) 0.89
Phase II trial of the use of paclitaxel and gemcitabine as a salvage treatment in metastatic breast cancer. Am J Clin Oncol (2001) 0.86
Intervening sequences exhibit distinct vocabulary. J Biomol Struct Dyn (1986) 0.86
Nucleotide sequence-directed mapping of the nucleosomes of SV40 chromatin. Cell Biophys (1984) 0.84
Columnar packing of telomeric nucleosomes. Biochem Biophys Res Commun (2001) 0.84
tRNA-rRNA sequence matches from inter- and intraspecies comparisons suggest common origins for the two RNAs. Braz J Med Biol Res (1989) 0.84
Superhelicity of nucleosomal DNA changes its double-helical repeat. Cell Biophys (1983) 0.83
The relationship between the nuclear volumes and DNA contents of the hepatocyte nuclei, in the normal liver, in the hepatosplenic form of Mansoni schistosomiasis, and in hepatic cirrhosis. Rev Bras Pesqui Med Biol (1972) 0.82
Localization of curved DNA and its association with nucleosome phasing in the promoter region of the human estrogen receptor alpha gene. FEBS Lett (1999) 0.81
Underlying order in protein sequence organization. Proc Natl Acad Sci U S A (1994) 0.80
Periodic recurrence of methionines: fossil of gene fusion? Proc Natl Acad Sci U S A (1995) 0.80
Protein sequence modules. J Biomol Struct Dyn (2005) 0.79
Imported sequences in the mitochondrial yeast genome identified by nucleotide linguistics. Gene (1992) 0.78
Sequence-directed mapping of nucleosome positions. J Biomol Struct Dyn (2007) 0.78
Enhancement of the nucleosomal pattern in sequences of lower complexity. Nucleic Acids Res (1997) 0.78
Gemcitabine and paclitaxel as salvage therapy in metastatic breast cancer. Oncology (Williston Park) (2001) 0.78
Indicators of inflammation and cellular damage in chronic asymptomatic or oligosymptomatic alcoholics: correlation with alteration of bilirubin and hepatic and pancreatic enzymes. Rev Hosp Clin Fac Med Sao Paulo (1999) 0.78
Characteristics of an "unclonable" DNA sequence located in the intergenic spacer between the pi- and alpha D-globin genes of the chicken. Dokl Biochem Biophys (2001) 0.77
[Relation of polyphenylalanine synthesis in a cell-free system to the proportion of bivalent and monovalent cations]. Dokl Akad Nauk SSSR (1970) 0.77
Noninvasive classification of liver disease in asymptomatic and oligosymptomatic male alcoholics. Braz J Med Biol Res (2003) 0.77
MS2 RNA has a potential to form an unusually large number of stable hairpins. J Theor Biol (1980) 0.76
Liver synthesis function in chronic asymptomatic or oligosymptomatic alcoholics: correlation with other liver tests. Rev Hosp Clin Fac Med Sao Paulo (2000) 0.76
Simian virus 40 replication pause sites map with the nucleosomes. J Virol (1984) 0.75
A unique DNA found in post-mitochondrial fractions from Ehrlich ascites tumor cells. Rev Bras Biol (1982) 0.75
[Evolutionary aspects of protein structure and folding]. Mol Biol (Mosk) (2001) 0.75
One common structural feature of "words" in protein sequences and human texts. J Biomol Struct Dyn (2013) 0.75
Study of low-melting segments in T2 phage DNA by electron microscopy and the kinetic formaldehyde method. Mol Biol (1973) 0.75
[On the behaviour of nuclear volumes of the hepatocytes in the acute or toxemic forms of Manson's schistosomiasis]. Rev Inst Med Trop Sao Paulo (1968) 0.75
Age variations of the nuclear volumes and DNA contents in the developing human hepatocytes. Biol Neonate (1971) 0.75
Taxonomy of 5 S ribosomal RNA by the linguistic technique: probing with mitochondrial and mammalian sequences. J Mol Evol (1997) 0.75
Sequence sizes of eukaryotic enzymes. Pac Symp Biocomput (1996) 0.75
[Introduction to the epidemiological study of hepatic cirrhosis (postnecrotic and Morgagni-Läennec) and of hepatocarcinomas in Minas Gerais, Brazil]. Rev Inst Med Trop Sao Paulo (1971) 0.75
[Effect of ionizing electromagnetic radiation on DNA in solution and on white blood cells]. Dokl Akad Nauk SSSR (1975) 0.75
[Experimental pathology of Pseudomonas aeruginosa infection in the mouse. Pathogenesis of experimental and human pseudomoniasis]. Rev Inst Med Trop Sao Paulo (1969) 0.75
The cytoplasmatic-nuclear volumetric relationships of the hepatocytes in the livers of patients with hepatocarcinomas, and with primarily extra-hepatic carcinoma. AMB Rev Assoc Med Bras (1971) 0.75
[Pathological anatomy of disseminated pseudomonas infections (a fatal case)]. Hospital (Rio J) (1969) 0.75
On Nussinov's compilation of eukaryotic transcription initiation sites. J Theor Biol (1987) 0.75
[Anatomo-clinical study of 2 cases of Letterer-Siwe disease]. Rev Hosp Clin Fac Med Sao Paulo (1971) 0.75
Serum uric acid levels in Chagas' disease. Mem Inst Oswaldo Cruz (1990) 0.75
The citoplasmatic-nuclear volumetric relationships of the hepatocytes in schistosomiasis Mansoni (Symmers' form) and in Morgagni-Laennec's cirrhosis. AMB Rev Assoc Med Bras (1971) 0.75
Detection of low-melting sites in the phage T2 DNA molecule. Mol Biol (1973) 0.75
[Study by the kinetic formaldehyde method of DNA following gamma-irradiation in vitro]. Dokl Akad Nauk SSSR (1972) 0.75
Protein structure and folding: a new start. J Biomol Struct Dyn (2001) 0.75
[On a case of giant cell pneumonia with giant cell hepatitis and meningoencephalitis]. Hospital (Rio J) (1966) 0.75
Uptake of purine bases by Trypanosoma cruzi culture epimastigotes. Braz J Med Biol Res (1986) 0.75
[DNA structural damage in the tissues of gamma-irradiated animals]. Dokl Akad Nauk SSSR (1973) 0.75