Published in J Biomol Struct Dyn on December 01, 1986
WORDUP: an efficient algorithm for discovering statistically significant patterns in DNA sequences. Nucleic Acids Res (1992) 1.05
Objective comparison of exon and intron sequences by means of 2-dimensional data analysis methods. Nucleic Acids Res (1988) 0.99
The average mutual information profile as a genomic signature. BMC Bioinformatics (2008) 0.83
Peptide vocabulary analysis reveals ultra-conservation and homonymity in protein sequences. Bioinform Biol Insights (2009) 0.75
Compilation and analysis of eukaryotic POL II promoter sequences. Nucleic Acids Res (1986) 6.68
The pitch of chromatin DNA is reflected in its nucleotide sequence. Proc Natl Acad Sci U S A (1980) 5.88
A computer algorithm for testing potential prokaryotic terminators. Nucleic Acids Res (1984) 4.73
Curved DNA: design, synthesis, and circularization. Proc Natl Acad Sci U S A (1986) 3.72
Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles. Proc Natl Acad Sci U S A (1991) 3.61
Optimal spliced alignment of homologous cDNA to a genomic DNA template. Bioinformatics (2000) 3.14
Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences. J Mol Biol (1996) 2.86
Estimation of wedge components in curved DNA. Nature (1987) 2.82
Curved DNA. CRC Crit Rev Biochem (1985) 2.78
Sequence-dependent deformational anisotropy of chromatin DNA. Nucleic Acids Res (1980) 2.53
Terminators of transcription with RNA polymerase from Escherichia coli: what they look like and how to find them. J Biomol Struct Dyn (1986) 2.53
Statistical methods and insights for protein and DNA sequences. Annu Rev Biophys Biophys Chem (1991) 2.32
Chance and statistical significance in protein and DNA sequence analysis. Science (1992) 2.25
The ten helical twist angles of B-DNA. Nucleic Acids Res (1982) 2.02
Identification of significant sequence patterns in proteins. Methods Enzymol (1990) 1.99
Charge configurations in oncogene products and transforming proteins. Oncogene (1990) 1.85
A method to identify distinctive charge configurations in protein sequences, with application to human herpesvirus polypeptides. J Mol Biol (1989) 1.75
Bacterial classifications derived from recA protein sequence comparisons. J Bacteriol (1995) 1.66
CURVATURE: software for the analysis of curved DNA. Comput Appl Biosci (1993) 1.64
Linguistics of nucleotide sequences: morphology and comparison of vocabularies. J Biomol Struct Dyn (1986) 1.63
Open and closed 5 S ribosomal RNA, the only two universal structures encoded in the nucleotide sequences. J Mol Biol (1983) 1.58
Possibility of nonkinked packing of DNA in chromatin. Proc Natl Acad Sci U S A (1978) 1.58
Significant similarity and dissimilarity in homologous proteins. Mol Biol Evol (1992) 1.57
Multi-query sequence BLAST output examination with MuSeqBox. Bioinformatics (2001) 1.51
Identification of biased amino acid substitution patterns in human immunodeficiency virus type 1 isolates from patients treated with protease inhibitors. J Virol (1999) 1.50
Patchiness and correlations in DNA sequences. Science (1993) 1.47
Nucleotide sequence-directed mapping of the nucleosomes. Nucleic Acids Res (1983) 1.47
Gene discovery using the maize genome database ZmDB. Nucleic Acids Res (2000) 1.41
Too many leucine zippers? Nature (1989) 1.27
10-11 bp periodicities in complete genomes reflect protein structure and DNA folding. Bioinformatics (1999) 1.27
Applicability of the multiple alignment algorithm for detection of weak patterns: periodically distributed DNA pattern as a study case. Comput Appl Biosci (1996) 1.27
Splice junctions follow a 205-base ladder. Proc Natl Acad Sci U S A (1991) 1.25
Melting of DNA: its study and application as a research method. Biopolymers (1970) 1.24
Sequence-dependent variations of B-DNA structure and protein-DNA recognition. Cold Spring Harb Symp Quant Biol (1983) 1.23
Closed loops of nearly standard size: common basic element of protein structure. FEBS Lett (2000) 1.23
The multiple codes of nucleotide sequences. Bull Math Biol (1989) 1.20
Nucleosomal DNA sequence database. Nucleic Acids Res (1993) 1.18
Sequence-dependent kinks induced in curved DNA. J Biomol Struct Dyn (1990) 1.17
Mammalian retroposons integrate at kinkable DNA sites. J Biomol Struct Dyn (1998) 1.17
Noninteger pitch and nuclease sensitivity of chromatin DNA. Biochemistry (1979) 1.16
Periodical distribution of transcription factor sites in promoter regions and connection with chromatin structure. Proc Natl Acad Sci U S A (1999) 1.16
Molecular characterization of a mutable pigmentation phenotype and isolation of the first active transposable element from Sorghum bicolor. Proc Natl Acad Sci U S A (1999) 1.13
Sequence periodicity in complete genomes of archaea suggests positive supercoiling. J Biomol Struct Dyn (1998) 1.09
Non-clonability correlates with genomic instability: a case study of a unique DNA region. J Mol Biol (2001) 1.07
Van der Waals locks: loop-n-lock structure of globular proteins. J Mol Biol (2001) 1.06
CCAAT box revisited: bidirectionality, location and context. J Biomol Struct Dyn (1988) 1.05
Gene structure prediction by spliced alignment of genomic DNA with protein sequences: increased accuracy by differential splice site scoring. J Mol Biol (2000) 1.05
Protective nucleosome centering at splice sites as suggested by sequence-directed mapping of the nucleosomes. Gene (1997) 1.04
U-richness is a defining feature of plant introns and may function as an intron recognition signal in maize. Plant Mol Biol (1998) 1.04
Unusual frequencies of certain alternating purine-pyrimidine runs in natural DNA sequences: relation to Z-DNA. FEBS Lett (1985) 1.04
Sequence structure of hidden 10.4-base repeat in the nucleosomes of C. elegans. J Biomol Struct Dyn (2008) 1.03
Clustering of thymine dimers in ultraviolet irradiated DNA and the long-range transfer of electronic excitation along the molecule. Nat New Biol (1973) 1.02
Test of the combinatorial model of intron recognition in a native maize gene. Plant Mol Biol (1999) 1.00
Linguistic measure of taxonomic and functional relatedness of nucleotide sequences. J Biomol Struct Dyn (1990) 0.99
Charge configurations in viral proteins. Proc Natl Acad Sci U S A (1988) 0.99
[Genetic level of DNA sequences is determined by superposition of many codes]. Mol Biol (Mosk) (1997) 0.99
Nucleosome DNA bendability matrix (C. elegans). J Biomol Struct Dyn (2009) 0.99
mRNA periodical infrastructure complementary to the proof-reading site in the ribosome. J Biomol Struct Dyn (1992) 0.94
DNA bendability--a novel feature in E. coli promoter recognition. J Biomol Struct Dyn (1999) 0.94
Protein folding: looping from hydrophobic nuclei. Proteins (2001) 0.93
Nucleosome positioning pattern derived from oligonucleotide compositions of genomic sequences. J Biomol Struct Dyn (2011) 0.92
Epigenetic nucleosomes: Alu sequences and CG as nucleosome positioning element. J Biomol Struct Dyn (2008) 0.91
Single-base resolution nucleosome mapping on DNA sequences. J Biomol Struct Dyn (2010) 0.91
Loop fold nature of globular proteins. Protein Eng (2001) 0.91
Linguistic complexity of protein sequences as compared to texts of human languages. Biosystems (1996) 0.90
Preferred positions of AA and TT dinucleotides in aligned nucleosomal DNA sequences. J Biomol Struct Dyn (1992) 0.89
Logitlinear models for the prediction of splice sites in plant pre-mRNA sequences. Nucleic Acids Res (1996) 0.88
Genome structure described by formal languages. Nucleic Acids Res (1984) 0.84
Nucleotide sequence-directed mapping of the nucleosomes of SV40 chromatin. Cell Biophys (1984) 0.84
Columnar packing of telomeric nucleosomes. Biochem Biophys Res Commun (2001) 0.84
A combinatorial role for exon, intron and splice site sequences in splicing in maize. Plant J (1997) 0.83
Superhelicity of nucleosomal DNA changes its double-helical repeat. Cell Biophys (1983) 0.83
Kinetics of complementary RNA-RNA interaction involved in plasmid ColE1 copy number control. J Mol Biol (1989) 0.82
Localization of curved DNA and its association with nucleosome phasing in the promoter region of the human estrogen receptor alpha gene. FEBS Lett (1999) 0.81
Periodic recurrence of methionines: fossil of gene fusion? Proc Natl Acad Sci U S A (1995) 0.80
GeneGenerator--a flexible algorithm for gene prediction and its application to maize sequences. Bioinformatics (1998) 0.80
Underlying order in protein sequence organization. Proc Natl Acad Sci U S A (1994) 0.80
A comparative analysis of distinctive features of yeast protein sequences. Yeast (1993) 0.80
Towards functional repertoire of the earliest proteins. J Biomol Struct Dyn (2012) 0.79
Protein sequence modules. J Biomol Struct Dyn (2005) 0.79
Spliceosomal proteins in plants. Curr Top Microbiol Immunol (2008) 0.78
Imported sequences in the mitochondrial yeast genome identified by nucleotide linguistics. Gene (1992) 0.78
Enhancement of the nucleosomal pattern in sequences of lower complexity. Nucleic Acids Res (1997) 0.78
Sequence-directed mapping of nucleosome positions. J Biomol Struct Dyn (2007) 0.78
Characteristics of an "unclonable" DNA sequence located in the intergenic spacer between the pi- and alpha D-globin genes of the chicken. Dokl Biochem Biophys (2001) 0.77
Mapping of transcription terminators of bacteriophages phi X174 and G4 by sequence analysis. J Virol (1985) 0.77
[Relation of polyphenylalanine synthesis in a cell-free system to the proportion of bivalent and monovalent cations]. Dokl Akad Nauk SSSR (1970) 0.77
MS2 RNA has a potential to form an unusually large number of stable hairpins. J Theor Biol (1980) 0.76
Simian virus 40 replication pause sites map with the nucleosomes. J Virol (1984) 0.75
[Effect of ionizing electromagnetic radiation on DNA in solution and on white blood cells]. Dokl Akad Nauk SSSR (1975) 0.75
Sequence sizes of eukaryotic enzymes. Pac Symp Biocomput (1996) 0.75
[DNA structural damage in the tissues of gamma-irradiated animals]. Dokl Akad Nauk SSSR (1973) 0.75
Catheters utilized in delivering total parenteral nutrition. NITA (1985) 0.75
The missense errors in protein can be controlled by selective synonymous codon usage at the level of transcription. Biochimie (1985) 0.75
One common structural feature of "words" in protein sequences and human texts. J Biomol Struct Dyn (2013) 0.75
Study of low-melting segments in T2 phage DNA by electron microscopy and the kinetic formaldehyde method. Mol Biol (1973) 0.75
[Evolutionary aspects of protein structure and folding]. Mol Biol (Mosk) (2001) 0.75
On Nussinov's compilation of eukaryotic transcription initiation sites. J Theor Biol (1987) 0.75
Current concepts in the care of central line catheters. NITA (1983) 0.75