Published in J Biomol Struct Dyn on February 01, 1986
Sequences required for expression of Bordetella pertussis virulence factors share homology with prokaryotic signal transduction proteins. Proc Natl Acad Sci U S A (1989) 4.78
Identification and arrangement of the DNA sequence recognized in specific transformation of Neisseria gonorrhoeae. Proc Natl Acad Sci U S A (1988) 4.04
Two divergently transcribed genes, soxR and soxS, control a superoxide response regulon of Escherichia coli. J Bacteriol (1991) 3.81
The molecular architecture of the sar locus in Staphylococcus aureus. J Bacteriol (1996) 3.46
Isolation and characterization of a gene involved in hemagglutination by an avian pathogenic Escherichia coli strain. Infect Immun (1994) 2.33
Prediction of rho-independent transcriptional terminators in Escherichia coli. Nucleic Acids Res (2001) 2.30
Cloning, genetic characterization, and nucleotide sequence of the hemA-prfA operon of Salmonella typhimurium. J Bacteriol (1989) 2.08
Nucleotide sequencing of the ruv region of Escherichia coli K-12 reveals a LexA regulated operon encoding two genes. Nucleic Acids Res (1988) 2.03
Transcriptional regulation of the ilv-leu operon of Bacillus subtilis. J Bacteriol (1992) 1.96
Identification of a gene, rgg, which regulates expression of glucosyltransferase and influences the Spp phenotype of Streptococcus gordonii Challis. J Bacteriol (1992) 1.89
Nucleotide sequence and expression of clcD, a plasmid-borne dienelactone hydrolase gene from Pseudomonas sp. strain B13. J Bacteriol (1987) 1.79
Sequence of the genome of the temperate, serotype-converting, Pseudomonas aeruginosa bacteriophage D3. J Bacteriol (2000) 1.72
Nucleotide sequence of the Streptococcus pneumoniae hexB mismatch repair gene: homology of HexB to MutL of Salmonella typhimurium and to PMS1 of Saccharomyces cerevisiae. J Bacteriol (1989) 1.67
Purification, cloning, and sequence of outer membrane protein P1 of Haemophilus influenzae type b. Infect Immun (1988) 1.66
Role of RopB in growth phase expression of the SpeB cysteine protease of Streptococcus pyogenes. J Bacteriol (2003) 1.64
DNA sequence and expression analysis of algP and algQ, components of the multigene system transcriptionally regulating mucoidy in Pseudomonas aeruginosa: algP contains multiple direct repeats. J Bacteriol (1990) 1.59
Conserved economics of transcription termination in eubacteria. Nucleic Acids Res (2002) 1.59
Sequence of the genome of Salmonella bacteriophage P22. J Bacteriol (2000) 1.56
Complete genomic sequence of bacteriophage B3, a Mu-like phage of Pseudomonas aeruginosa. J Bacteriol (2004) 1.55
Autoinducer 2 production by Streptococcus gordonii DL1 and the biofilm phenotype of a luxS mutant are influenced by nutritional conditions. J Bacteriol (2003) 1.48
Molecular cloning, expression, and primary sequence of outer membrane protein P2 of Haemophilus influenzae type b. Infect Immun (1989) 1.48
Cloning and sequence analysis of two Pseudomonas flavoprotein xenobiotic reductases. J Bacteriol (1999) 1.45
Conjugative transfer of Enterococcus faecalis plasmid pAD1: nucleotide sequence and transcriptional fusion analysis of a region involved in positive regulation. J Bacteriol (1992) 1.41
New functional identity for the DNA uptake sequence in transformation and its presence in transcriptional terminators. J Bacteriol (2006) 1.36
Transcriptional analysis of a region of the Enterococcus faecalis plasmid pCF10 involved in positive regulation of conjugative transfer functions. J Bacteriol (1995) 1.29
Activity of a Streptomyces transcriptional terminator in Escherichia coli. Nucleic Acids Res (1987) 1.27
The recR locus of Escherichia coli K-12: molecular cloning, DNA sequencing and identification of the gene product. Nucleic Acids Res (1989) 1.17
Location of the host attachment site for phage HPl within a cluster of Haemophilus influenzae tRNA genes. Nucleic Acids Res (1990) 1.12
Organization and nucleotide sequences of the genes encoding the biotin carboxyl carrier protein and biotin carboxylase protein of Pseudomonas aeruginosa acetyl coenzyme A carboxylase. J Bacteriol (1993) 1.09
nfi, the gene for endonuclease V in Escherichia coli K-12. J Bacteriol (1997) 1.05
The early promoters of bacteriophage HK022: contrasts and similarities to other lambdoid phages. J Bacteriol (1991) 1.04
A synthetic three-color scaffold for monitoring genetic regulation and noise. J Biol Eng (2010) 1.03
Hypersymmetry in a transcriptional terminator of Escherichia coli confers increased efficiency as well as bidirectionality. EMBO J (1992) 0.99
Expression of the nifBfdxNnifOQ region of Azotobacter vinelandii and its role in nitrogenase activity. J Bacteriol (1993) 0.99
Transcriptional termination at a fully rho-independent site in Escherichia coli is prevented by uninterrupted translation of the nascent RNA. EMBO J (1987) 0.98
Escherichia coli RNA polymerase terminates transcription efficiently at rho-independent terminators on single-stranded DNA templates. Proc Natl Acad Sci U S A (1997) 0.97
Cloning and nucleic acid sequence of the Salmonella typhimurium pncB gene and structure of nicotinate phosphoribosyltransferase. J Bacteriol (1991) 0.87
A novel conformation of RNA polymerase sheds light on the mechanism of transcription. Transcription (2011) 0.85
Balanced branching in transcription termination. Proc Natl Acad Sci U S A (2001) 0.84
The genome of BCJA1c: a bacteriophage active against the alkaliphilic bacterium, Bacillus clarkii. Extremophiles (2004) 0.83
Discover 1: a new program to search for unusually represented DNA motifs. Nucleic Acids Res (1993) 0.81
Identification and characterization of the terminators of the lys and P transcripts of bacteriophage Mu. J Bacteriol (1994) 0.75
Compilation and analysis of eukaryotic POL II promoter sequences. Nucleic Acids Res (1986) 6.68
The pitch of chromatin DNA is reflected in its nucleotide sequence. Proc Natl Acad Sci U S A (1980) 5.88
A computer algorithm for testing potential prokaryotic terminators. Nucleic Acids Res (1984) 4.73
Curved DNA: design, synthesis, and circularization. Proc Natl Acad Sci U S A (1986) 3.72
Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles. Proc Natl Acad Sci U S A (1991) 3.61
The EMBL data library. Nucleic Acids Res (1986) 3.29
Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences. J Mol Biol (1996) 2.86
Estimation of wedge components in curved DNA. Nature (1987) 2.82
Curved DNA. CRC Crit Rev Biochem (1985) 2.78
Sequence-dependent deformational anisotropy of chromatin DNA. Nucleic Acids Res (1980) 2.53
The ten helical twist angles of B-DNA. Nucleic Acids Res (1982) 2.02
CURVATURE: software for the analysis of curved DNA. Comput Appl Biosci (1993) 1.64
Linguistics of nucleotide sequences: morphology and comparison of vocabularies. J Biomol Struct Dyn (1986) 1.63
Open and closed 5 S ribosomal RNA, the only two universal structures encoded in the nucleotide sequences. J Mol Biol (1983) 1.58
Possibility of nonkinked packing of DNA in chromatin. Proc Natl Acad Sci U S A (1978) 1.58
Nucleotide sequence-directed mapping of the nucleosomes. Nucleic Acids Res (1983) 1.47
10-11 bp periodicities in complete genomes reflect protein structure and DNA folding. Bioinformatics (1999) 1.27
Applicability of the multiple alignment algorithm for detection of weak patterns: periodically distributed DNA pattern as a study case. Comput Appl Biosci (1996) 1.27
Splice junctions follow a 205-base ladder. Proc Natl Acad Sci U S A (1991) 1.25
Melting of DNA: its study and application as a research method. Biopolymers (1970) 1.24
Closed loops of nearly standard size: common basic element of protein structure. FEBS Lett (2000) 1.23
Sequence-dependent variations of B-DNA structure and protein-DNA recognition. Cold Spring Harb Symp Quant Biol (1983) 1.23
The multiple codes of nucleotide sequences. Bull Math Biol (1989) 1.20
Nucleosomal DNA sequence database. Nucleic Acids Res (1993) 1.18
Sequence-dependent kinks induced in curved DNA. J Biomol Struct Dyn (1990) 1.17
Mammalian retroposons integrate at kinkable DNA sites. J Biomol Struct Dyn (1998) 1.17
Noninteger pitch and nuclease sensitivity of chromatin DNA. Biochemistry (1979) 1.16
Periodical distribution of transcription factor sites in promoter regions and connection with chromatin structure. Proc Natl Acad Sci U S A (1999) 1.16
Sequence periodicity in complete genomes of archaea suggests positive supercoiling. J Biomol Struct Dyn (1998) 1.09
Non-clonability correlates with genomic instability: a case study of a unique DNA region. J Mol Biol (2001) 1.07
Van der Waals locks: loop-n-lock structure of globular proteins. J Mol Biol (2001) 1.06
CCAAT box revisited: bidirectionality, location and context. J Biomol Struct Dyn (1988) 1.05
Protective nucleosome centering at splice sites as suggested by sequence-directed mapping of the nucleosomes. Gene (1997) 1.04
Unusual frequencies of certain alternating purine-pyrimidine runs in natural DNA sequences: relation to Z-DNA. FEBS Lett (1985) 1.04
Sequence structure of hidden 10.4-base repeat in the nucleosomes of C. elegans. J Biomol Struct Dyn (2008) 1.03
Clustering of thymine dimers in ultraviolet irradiated DNA and the long-range transfer of electronic excitation along the molecule. Nat New Biol (1973) 1.02
Linguistic measure of taxonomic and functional relatedness of nucleotide sequences. J Biomol Struct Dyn (1990) 0.99
[Genetic level of DNA sequences is determined by superposition of many codes]. Mol Biol (Mosk) (1997) 0.99
Nucleosome DNA bendability matrix (C. elegans). J Biomol Struct Dyn (2009) 0.99
DNA bendability--a novel feature in E. coli promoter recognition. J Biomol Struct Dyn (1999) 0.94
mRNA periodical infrastructure complementary to the proof-reading site in the ribosome. J Biomol Struct Dyn (1992) 0.94
Protein folding: looping from hydrophobic nuclei. Proteins (2001) 0.93
Nucleosome positioning pattern derived from oligonucleotide compositions of genomic sequences. J Biomol Struct Dyn (2011) 0.92
Single-base resolution nucleosome mapping on DNA sequences. J Biomol Struct Dyn (2010) 0.91
Epigenetic nucleosomes: Alu sequences and CG as nucleosome positioning element. J Biomol Struct Dyn (2008) 0.91
Loop fold nature of globular proteins. Protein Eng (2001) 0.91
Linguistic complexity of protein sequences as compared to texts of human languages. Biosystems (1996) 0.90
Preferred positions of AA and TT dinucleotides in aligned nucleosomal DNA sequences. J Biomol Struct Dyn (1992) 0.89
Intervening sequences exhibit distinct vocabulary. J Biomol Struct Dyn (1986) 0.86
Columnar packing of telomeric nucleosomes. Biochem Biophys Res Commun (2001) 0.84
Nucleotide sequence-directed mapping of the nucleosomes of SV40 chromatin. Cell Biophys (1984) 0.84
Superhelicity of nucleosomal DNA changes its double-helical repeat. Cell Biophys (1983) 0.83
Localization of curved DNA and its association with nucleosome phasing in the promoter region of the human estrogen receptor alpha gene. FEBS Lett (1999) 0.81
Underlying order in protein sequence organization. Proc Natl Acad Sci U S A (1994) 0.80
Periodic recurrence of methionines: fossil of gene fusion? Proc Natl Acad Sci U S A (1995) 0.80
Towards functional repertoire of the earliest proteins. J Biomol Struct Dyn (2012) 0.79
Protein sequence modules. J Biomol Struct Dyn (2005) 0.79
Imported sequences in the mitochondrial yeast genome identified by nucleotide linguistics. Gene (1992) 0.78
Enhancement of the nucleosomal pattern in sequences of lower complexity. Nucleic Acids Res (1997) 0.78
Sequence-directed mapping of nucleosome positions. J Biomol Struct Dyn (2007) 0.78
Characteristics of an "unclonable" DNA sequence located in the intergenic spacer between the pi- and alpha D-globin genes of the chicken. Dokl Biochem Biophys (2001) 0.77
[Relation of polyphenylalanine synthesis in a cell-free system to the proportion of bivalent and monovalent cations]. Dokl Akad Nauk SSSR (1970) 0.77
MS2 RNA has a potential to form an unusually large number of stable hairpins. J Theor Biol (1980) 0.76
Simian virus 40 replication pause sites map with the nucleosomes. J Virol (1984) 0.75
[Evolutionary aspects of protein structure and folding]. Mol Biol (Mosk) (2001) 0.75
Detection of low-melting sites in the phage T2 DNA molecule. Mol Biol (1973) 0.75
[Study by the kinetic formaldehyde method of DNA following gamma-irradiation in vitro]. Dokl Akad Nauk SSSR (1972) 0.75
Protein structure and folding: a new start. J Biomol Struct Dyn (2001) 0.75
On Nussinov's compilation of eukaryotic transcription initiation sites. J Theor Biol (1987) 0.75
[Effect of ionizing electromagnetic radiation on DNA in solution and on white blood cells]. Dokl Akad Nauk SSSR (1975) 0.75
Sequence sizes of eukaryotic enzymes. Pac Symp Biocomput (1996) 0.75
Taxonomy of 5 S ribosomal RNA by the linguistic technique: probing with mitochondrial and mammalian sequences. J Mol Evol (1997) 0.75
Study of low-melting segments in T2 phage DNA by electron microscopy and the kinetic formaldehyde method. Mol Biol (1973) 0.75
One common structural feature of "words" in protein sequences and human texts. J Biomol Struct Dyn (2013) 0.75
[DNA structural damage in the tissues of gamma-irradiated animals]. Dokl Akad Nauk SSSR (1973) 0.75