Published in Microbiology on February 21, 2013
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Res (2013) 5.13
Mutations enabling displacement of tryptophan by 4-fluorotryptophan as a canonical amino acid of the genetic code. Genome Biol Evol (2014) 1.16
Updates in Rhea--a manually curated resource of biochemical reactions. Nucleic Acids Res (2014) 0.98
Predicting the minimal translation apparatus: lessons from the reductive evolution of mollicutes. PLoS Genet (2014) 0.96
MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes. Nucleic Acids Res (2016) 0.94
Biodiversity of genes encoding anti-microbial traits within plant associated microbes. Front Plant Sci (2015) 0.86
Role of toxin ζ and starvation responses in the sensitivity to antimicrobials. PLoS One (2014) 0.80
Uptake of amino acids and their metabolic conversion into the compatible solute proline confers osmoprotection to Bacillus subtilis. Appl Environ Microbiol (2014) 0.79
The γ-aminobutyrate permease GabP serves as the third proline transporter of Bacillus subtilis. J Bacteriol (2013) 0.79
Salt-sensitivity of σ(H) and Spo0A prevents sporulation of Bacillus subtilis at high osmolarity avoiding death during cellular differentiation. Mol Microbiol (2016) 0.76
Dimethylglycine provides salt and temperature stress protection to Bacillus subtilis. Appl Environ Microbiol (2014) 0.76
Bacillus amyloliquefaciens, Bacillus velezensis, and Bacillus siamensis Form an "Operational Group B. amyloliquefaciens" within the B. subtilis Species Complex. Front Microbiol (2017) 0.75
MaGe: a microbial genome annotation system supported by synteny results. Nucleic Acids Res (2006) 12.48
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet (2009) 8.51
Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. N Engl J Med (2011) 7.11
Comparative genomics of multidrug resistance in Acinetobacter baumannii. PLoS Genet (2006) 6.32
The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens. Nat Biotechnol (2003) 6.11
Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv. Microbiology (2002) 5.17
MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data. Nucleic Acids Res (2012) 5.12
Unique physiological and pathogenic features of Leptospira interrogans revealed by whole-genome sequencing. Nature (2003) 5.04
Nucleotide sequence database policies. Science (2002) 4.72
AMIGene: Annotation of MIcrobial Genes. Nucleic Acids Res (2003) 4.25
Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium. Nucleic Acids Res (2004) 4.19
Deciphering the evolution and metabolism of an anammox bacterium from a community genome. Nature (2006) 4.06
Comparative analysis of Acinetobacters: three genomes for three lifestyles. PLoS One (2008) 3.94
Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228). Mol Microbiol (2003) 3.86
Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography. Genome Res (2006) 3.53
Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia. Science (2007) 3.42
Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human. Proc Natl Acad Sci U S A (2005) 3.37
Base composition bias might result from competition for metabolic resources. Trends Genet (2002) 3.17
Genome sequences of Escherichia coli B strains REL606 and BL21(DE3). J Mol Biol (2009) 3.10
SubtiList: the reference database for the Bacillus subtilis genome. Nucleic Acids Res (2002) 2.99
Universal biases in protein composition of model prokaryotes. Proteins (2005) 2.90
Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125. Genome Res (2005) 2.89
Rhea--a manually curated resource of biochemical reactions. Nucleic Acids Res (2011) 2.87
A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1. Mol Syst Biol (2008) 2.79
Are splicing mutations the most frequent cause of hereditary disease? FEBS Lett (2005) 2.68
An analysis of determinants of amino acids substitution rates in bacterial proteins. Mol Biol Evol (2003) 2.63
From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Microbiology (2009) 2.62
Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila. Nat Biotechnol (2006) 2.41
Genome sequence of the saprophyte Leptospira biflexa provides insights into the evolution of Leptospira and the pathogenesis of leptospirosis. PLoS One (2008) 2.35
Essentiality, not expressiveness, drives gene-strand bias in bacteria. Nat Genet (2003) 2.24
Computational disease gene identification: a concert of methods prioritizes type 2 diabetes and obesity candidate genes. Nucleic Acids Res (2006) 1.95
Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. PLoS One (2009) 1.94
The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments. PLoS One (2010) 1.78
Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence. BMC Genomics (2010) 1.75
Gene essentiality determines chromosome organisation in bacteria. Nucleic Acids Res (2003) 1.74
Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia. Genome Res (2008) 1.71
GadE (YhiE): a novel activator involved in the response to acid environment in Escherichia coli. Microbiology (2004) 1.71
Bacterial variations on the methionine salvage pathway. BMC Microbiol (2004) 1.68
Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis. Nat Genet (2013) 1.67
Profiling the orphan enzymes. Biol Direct (2014) 1.67
NeMeSys: a biological resource for narrowing the gap between sequence and function in the human pathogen Neisseria meningitidis. Genome Biol (2009) 1.66
How essential are nonessential genes? Mol Biol Evol (2005) 1.63
"Candidatus Cloacamonas acidaminovorans": genome sequence reconstruction provides a first glimpse of a new bacterial division. J Bacteriol (2008) 1.60
A tale of two oxidation states: bacterial colonization of arsenic-rich environments. PLoS Genet (2007) 1.59
Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load. Proc Natl Acad Sci U S A (2012) 1.56
Mutation Rate Inferred From Synonymous Substitutions in a Long-Term Evolution Experiment With Escherichia coli. G3 (Bethesda) (2011) 1.53
The plasmid of Escherichia coli strain S88 (O45:K1:H7) that causes neonatal meningitis is closely related to avian pathogenic E. coli plasmids and is associated with high-level bacteremia in a neonatal rat meningitis model. Infect Immun (2009) 1.53
Ralstonia syzygii, the Blood Disease Bacterium and some Asian R. solanacearum strains form a single genomic species despite divergent lifestyles. PLoS One (2011) 1.50
Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms. BMC Genomics (2014) 1.48
The methionine salvage pathway in Bacillus subtilis. BMC Microbiol (2002) 1.48
The entomopathogenic bacterial endosymbionts Xenorhabdus and Photorhabdus: convergent lifestyles from divergent genomes. PLoS One (2011) 1.47
S-box and T-box riboswitches and antisense RNA control a sulfur metabolic operon of Clostridium acetobutylicum. Nucleic Acids Res (2008) 1.47
Global expression profile of Bacillus subtilis grown in the presence of sulfate or methionine. J Bacteriol (2002) 1.45
Three different systems participate in L-cystine uptake in Bacillus subtilis. J Bacteriol (2004) 1.40
The Trw type IV secretion system of Bartonella mediates host-specific adhesion to erythrocytes. PLoS Pathog (2010) 1.37
Persistence drives gene clustering in bacterial genomes. BMC Genomics (2008) 1.37
Synthetic biology: discovering new worlds and new words. EMBO Rep (2008) 1.35
Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data. BMC Syst Biol (2008) 1.35
Re-annotation of genome microbial coding-sequences: finding new genes and inaccurately annotated genes. BMC Bioinformatics (2002) 1.33
MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes. Nucleic Acids Res (2005) 1.32
Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data. Bioinformatics (2005) 1.30
Genome sequence of Vibrio splendidus: an abundant planctonic marine species with a large genotypic diversity. Environ Microbiol (2009) 1.29
Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations. Genome Res (2009) 1.29
YtqI from Bacillus subtilis has both oligoribonuclease and pAp-phosphatase activity. Nucleic Acids Res (2007) 1.29
Structure, function, and evolution of the Thiomonas spp. genome. PLoS Genet (2010) 1.27
Structure-based discovery of inhibitors of the YycG histidine kinase: new chemical leads to combat Staphylococcus epidermidis infections. BMC Microbiol (2006) 1.27
Genomic, proteomic, and transcriptomic analysis of virulent and avirulent Rickettsia prowazekii reveals its adaptive mutation capabilities. Genome Res (2010) 1.26
The metIC operon involved in methionine biosynthesis in Bacillus subtilis is controlled by transcription antitermination. Microbiology (2002) 1.25
A horizontally acquired filamentous phage contributes to the pathogenicity of the plague bacillus. Mol Microbiol (2007) 1.25
Identification, characterization, and regulation of a cluster of genes involved in carbapenem biosynthesis in Photorhabdus luminescens. Appl Environ Microbiol (2002) 1.25
Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics. ISME J (2011) 1.24