PubRank

Antoine Danchin

Author PubWeight™ 147.99‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet 2009 8.51
2 Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. N Engl J Med 2011 7.11
3 The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens. Nat Biotechnol 2003 6.11
4 Unique physiological and pathogenic features of Leptospira interrogans revealed by whole-genome sequencing. Nature 2003 5.04
5 Nucleotide sequence database policies. Science 2002 4.72
6 Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228). Mol Microbiol 2003 3.86
7 Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human. Proc Natl Acad Sci U S A 2005 3.37
8 Base composition bias might result from competition for metabolic resources. Trends Genet 2002 3.17
9 SubtiList: the reference database for the Bacillus subtilis genome. Nucleic Acids Res 2002 2.99
10 Universal biases in protein composition of model prokaryotes. Proteins 2005 2.90
11 Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125. Genome Res 2005 2.89
12 An analysis of determinants of amino acids substitution rates in bacterial proteins. Mol Biol Evol 2003 2.63
13 From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Microbiology 2009 2.62
14 Essentiality, not expressiveness, drives gene-strand bias in bacteria. Nat Genet 2003 2.24
15 Gene essentiality determines chromosome organisation in bacteria. Nucleic Acids Res 2003 1.74
16 GadE (YhiE): a novel activator involved in the response to acid environment in Escherichia coli. Microbiology 2004 1.71
17 Bacterial variations on the methionine salvage pathway. BMC Microbiol 2004 1.68
18 How essential are nonessential genes? Mol Biol Evol 2005 1.63
19 A tale of two oxidation states: bacterial colonization of arsenic-rich environments. PLoS Genet 2007 1.59
20 The methionine salvage pathway in Bacillus subtilis. BMC Microbiol 2002 1.48
21 S-box and T-box riboswitches and antisense RNA control a sulfur metabolic operon of Clostridium acetobutylicum. Nucleic Acids Res 2008 1.47
22 Global expression profile of Bacillus subtilis grown in the presence of sulfate or methionine. J Bacteriol 2002 1.45
23 Three different systems participate in L-cystine uptake in Bacillus subtilis. J Bacteriol 2004 1.40
24 The Trw type IV secretion system of Bartonella mediates host-specific adhesion to erythrocytes. PLoS Pathog 2010 1.37
25 Persistence drives gene clustering in bacterial genomes. BMC Genomics 2008 1.37
26 Synthetic biology: discovering new worlds and new words. EMBO Rep 2008 1.35
27 Re-annotation of genome microbial coding-sequences: finding new genes and inaccurately annotated genes. BMC Bioinformatics 2002 1.33
28 YtqI from Bacillus subtilis has both oligoribonuclease and pAp-phosphatase activity. Nucleic Acids Res 2007 1.29
29 Structure-based discovery of inhibitors of the YycG histidine kinase: new chemical leads to combat Staphylococcus epidermidis infections. BMC Microbiol 2006 1.27
30 The metIC operon involved in methionine biosynthesis in Bacillus subtilis is controlled by transcription antitermination. Microbiology 2002 1.25
31 Identification, characterization, and regulation of a cluster of genes involved in carbapenem biosynthesis in Photorhabdus luminescens. Appl Environ Microbiol 2002 1.25
32 Global control of cysteine metabolism by CymR in Bacillus subtilis. J Bacteriol 2006 1.24
33 The PhoP-PhoQ two-component regulatory system of Photorhabdus luminescens is essential for virulence in insects. J Bacteriol 2004 1.21
34 Molecular diagnosis of human cancer type by gene expression profiles and independent component analysis. Eur J Hum Genet 2005 1.21
35 Genomics of an extreme psychrophile, Psychromonas ingrahamii. BMC Genomics 2008 1.19
36 Was photosynthetic RuBisCO recruited by acquisitive evolution from RuBisCO-like proteins involved in sulfur metabolism? Res Microbiol 2005 1.16
37 Conversion of methionine to cysteine in Bacillus subtilis and its regulation. J Bacteriol 2006 1.14
38 Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis. Nucleic Acids Res 2009 1.10
39 Codon usage domains over bacterial chromosomes. PLoS Comput Biol 2006 1.09
40 Regulation of bacterial motility in response to low pH in Escherichia coli: the role of H-NS protein. Microbiology 2002 1.08
41 Identification of Bacillus subtilis CysL, a regulator of the cysJI operon, which encodes sulfite reductase. J Bacteriol 2002 1.08
42 Conserved transcription factor binding sites of cancer markers derived from primary lung adenocarcinoma microarrays. Nucleic Acids Res 2005 1.07
43 Small noncoding RNA GcvB is a novel regulator of acid resistance in Escherichia coli. BMC Genomics 2009 1.07
44 The metNPQ operon of Bacillus subtilis encodes an ABC permease transporting methionine sulfoxide, D- and L-methionine. Res Microbiol 2004 1.06
45 RuBisCO-like proteins as the enolase enzyme in the methionine salvage pathway: functional and evolutionary relationships between RuBisCO-like proteins and photosynthetic RuBisCO. J Exp Bot 2008 1.05
46 Oligoribonuclease is a common downstream target of lithium-induced pAp accumulation in Escherichia coli and human cells. Nucleic Acids Res 2006 1.05
47 Relationship of SARS-CoV to other pathogenic RNA viruses explored by tetranucleotide usage profiling. BMC Bioinformatics 2003 1.05
48 The secE gene of Helicobacter pylori. J Bacteriol 2002 1.04
49 From essential to persistent genes: a functional approach to constructing synthetic life. Trends Genet 2012 1.04
50 RcsB plays a central role in H-NS-dependent regulation of motility and acid stress resistance in Escherichia coli. Res Microbiol 2010 1.03
51 CymR, the master regulator of cysteine metabolism in Staphylococcus aureus, controls host sulphur source utilization and plays a role in biofilm formation. Mol Microbiol 2009 1.03
52 Conserved genes in a path from commensalism to pathogenicity: comparative phylogenetic profiles of Staphylococcus epidermidis RP62A and ATCC12228. BMC Genomics 2006 1.01
53 Exploring the Penicillium marneffei genome. Arch Microbiol 2003 1.01
54 Spx mediates oxidative stress regulation of the methionine sulfoxide reductases operon in Bacillus subtilis. BMC Microbiol 2008 1.01
55 The CymR regulator in complex with the enzyme CysK controls cysteine metabolism in Bacillus subtilis. J Biol Chem 2008 1.01
56 Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes. BMC Bioinformatics 2007 1.00
57 Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC. BMC Genomics 2012 0.97
58 Proteomics of life at low temperatures: trigger factor is the primary chaperone in the Antarctic bacterium Pseudoalteromonas haloplanktis TAC125. Mol Microbiol 2010 0.96
59 The two authentic methionine aminopeptidase genes are differentially expressed in Bacillus subtilis. BMC Microbiol 2005 0.95
60 Regulation of the Bacillus subtilis ytmI operon, involved in sulfur metabolism. J Bacteriol 2005 0.95
61 Characterization of NrnA homologs from Mycobacterium tuberculosis and Mycoplasma pneumoniae. RNA 2011 0.94
62 An updated metabolic view of the Bacillus subtilis 168 genome. Microbiology 2013 0.93
63 Genomic changes in nucleotide and dinucleotide frequencies in Pasteurella multocida cultured under high temperature. Genetics 2002 0.93
64 Decrypting the H-NS-dependent regulatory cascade of acid stress resistance in Escherichia coli. BMC Microbiol 2010 0.93
65 The ten grand challenges of synthetic life. Syst Synth Biol 2011 0.91
66 Pleiotropic role of quorum-sensing autoinducer 2 in Photorhabdus luminescens. Appl Environ Microbiol 2006 0.91
67 Hydrothermally generated aromatic compounds are consumed by bacteria colonizing in Atlantis II Deep of the Red Sea. ISME J 2011 0.91
68 AstR-AstS, a new two-component signal transduction system, mediates swarming, adaptation to stationary phase and phenotypic variation in Photorhabdus luminescens. Microbiology 2004 0.90
69 Proteome analysis of the phenotypic variation process in Photorhabdus luminescens. Proteomics 2006 0.90
70 Transcription regulation coupling of the divergent argG and metY promoters in Escherichia coli K-12. J Bacteriol 2003 0.90
71 The regulation of Enzyme IIA(Glc) expression controls adenylate cyclase activity in Escherichia coli. Microbiology 2002 0.90
72 A strand-specific model for chromosome segregation in bacteria. Mol Microbiol 2003 0.89
73 Regulatory role of UvrY in adaptation of Photorhabdus luminescens growth inside the insect. Environ Microbiol 2008 0.89
74 Identification of a novel nanoRNase in Bartonella. Microbiology 2012 0.88
75 Identification of genes and proteins involved in the pleiotropic response to arsenic stress in Caenibacter arsenoxydans, a metalloresistant beta-proteobacterium with an unsequenced genome. Biochimie 2005 0.88
76 Life's demons: information and order in biology. What subcellular machines gather and process the information necessary to sustain life? EMBO Rep 2011 0.87
77 Structural and functional similarities between a ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO)-like protein from Bacillus subtilis and photosynthetic RuBisCO. J Biol Chem 2009 0.87
78 Cinnamic acid, an autoinducer of its own biosynthesis, is processed via Hca enzymes in Photorhabdus luminescens. Appl Environ Microbiol 2008 0.87
79 Use of a riboswitch-controlled conditional hypomorphic mutation to uncover a role for the essential csrA gene in bacterial autoaggregation. J Biol Chem 2009 0.86
80 Specialized microbial databases for inductive exploration of microbial genome sequences. BMC Genomics 2005 0.85
81 Proteomic identification of a two-component regulatory system in Pseudoalteromonas haloplanktis TAC125. Extremophiles 2006 0.85
82 Life in the cold: a proteomic study of cold-repressed proteins in the antarctic bacterium pseudoalteromonas haloplanktis TAC125. Appl Environ Microbiol 2011 0.85
83 Bacterial niche-specific genome expansion is coupled with highly frequent gene disruptions in deep-sea sediments. PLoS One 2011 0.84
84 Persistent biases in the amino acid composition of prokaryotic proteins. Bioessays 2006 0.84
85 Cytosine methylation is not the major factor inducing CpG dinucleotide deficiency in bacterial genomes. J Mol Evol 2004 0.82
86 The HcaR regulatory protein of Photorhabdus luminescens affects the production of proteins involved in oxidative stress and toxemia. Proteomics 2007 0.82
87 Paralogous metabolism: S-alkyl-cysteine degradation in Bacillus subtilis. Environ Microbiol 2013 0.82
88 A double epidemic model for the SARS propagation. BMC Infect Dis 2003 0.81
89 3'-5' phosphoadenosine phosphate is an inhibitor of PARP-1 and a potential mediator of the lithium-dependent inhibition of PARP-1 in vivo. Biochem J 2012 0.81
90 Effect of mild acid pH on the functioning of bacterial membranes in Vibrio cholerae. Proteomics 2002 0.81
91 Potent and selective inhibitors of Staphylococcus epidermidis tryptophanyl-tRNA synthetase. J Antimicrob Chemother 2007 0.81
92 UMP kinase from the Gram-positive bacterium Bacillus subtilis is strongly dependent on GTP for optimal activity. Eur J Biochem 2003 0.81
93 Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns". BMC Bioinformatics 2005 0.80
94 Classification between normal and tumor tissues based on the pair-wise gene expression ratio. BMC Cancer 2004 0.80
95 3-phenylpropionate catabolism and the Escherichia coli oxidative stress response. Res Microbiol 2005 0.80
96 Cytoplasmic and periplasmic proteomic signatures of exponentially growing cells of the psychrophilic bacterium Pseudoalteromonas haloplanktis TAC125. Appl Environ Microbiol 2010 0.80
97 Linking selenium biogeochemistry to the sulfur-dependent biological detoxification of arsenic. Environ Microbiol 2012 0.79
98 Visualizing the proteome of Escherichia coli: an efficient and versatile method for labeling chromosomal coding DNA sequences (CDSs) with fluorescent protein genes. Nucleic Acids Res 2007 0.79
99 A Novel H-NS-like protein from an antarctic psychrophilic bacterium reveals a crucial role for the N-terminal domain in thermal stability. J Biol Chem 2003 0.79
100 A variable gene in a conserved region of the Helicobacter pylori genome: isotopic gene replacement or rapid evolution? DNA Res 2008 0.78
101 PssA is required for alpha-amylase secretion in Antarctic Pseudoalteromonas haloplanktis. Microbiology 2009 0.77
102 Confidence, tolerance, and allowance in biological engineering: the nuts and bolts of living things. Bioessays 2014 0.77
103 The DNA secondary structure of the Bacillus subtilis genome. FEMS Microbiol Lett 2003 0.76
104 Escherichia coli response to exogenous pyrophosphate and analogs. J Mol Microbiol Biotechnol 2003 0.76
105 A parasite vector-host epidemic model for TSE propagation. Med Sci Monit 2007 0.75
106 Microbial Biotechnology-2020. Microb Biotechnol 2016 0.75
107 Re: request from the International Advisory Committee to DDBJ/EMBL/GenBank. J Med Virol 2006 0.75
108 Request from the International Advisory Committee to DDBJ/EMBL/GenBank. J Virol Methods 2006 0.75
109 Corrigendum: Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis. Nat Chem Biol 2017 0.75