Published in Stand Genomic Sci on September 28, 2012
Global catalogue of microorganisms (gcm): a comprehensive database and information retrieval, analysis, and visualization system for microbial resources. BMC Genomics (2013) 0.92
BacDive--the Bacterial Diversity Metadatabase. Nucleic Acids Res (2013) 0.92
Clarifying concepts and terms in biodiversity informatics. Stand Genomic Sci (2013) 0.77
BaMBa: towards the integrated management of Brazilian marine environmental data. Database (Oxford) (2015) 0.77
Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res (2003) 38.75
The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol (2008) 31.04
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res (2012) 19.48
Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation. OMICS (2008) 18.69
Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes. DNA Res (2007) 13.08
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat Biotechnol (2008) 12.96
TDP-43 is a component of ubiquitin-positive tau-negative inclusions in frontotemporal lobar degeneration and amyotrophic lateral sclerosis. Biochem Biophys Res Commun (2006) 10.69
Darwin Core: an evolving community-developed biodiversity data standard. PLoS One (2012) 9.17
The sequence read archive. Nucleic Acids Res (2010) 7.97
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol (2011) 7.53
The MGED Ontology: a resource for semantics-based description of microarray experiments. Bioinformatics (2006) 7.37
Integrative annotation of 21,037 human genes validated by full-length cDNA clones. PLoS Biol (2004) 7.17
Archiving next generation sequencing data. Nucleic Acids Res (2009) 6.98
The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010. Stand Genomic Sci (2010) 6.30
Origin and diversity of novel avian influenza A H7N9 viruses causing human infection: phylogenetic, structural, and coalescent analyses. Lancet (2013) 6.10
DDBJ in preparation for overview of research activities behind data submissions. Nucleic Acids Res (2006) 6.02
ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level. Bioinformatics (2010) 5.60
Toward interoperable bioscience data. Nat Genet (2012) 4.72
Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. Stand Genomic Sci (2010) 4.70
Defining seasonal marine microbial community dynamics. ISME J (2011) 4.61
Habitat-Lite: a GSC case study based on free text terms for environmental metadata. OMICS (2008) 4.40
The seasonal structure of microbial communities in the Western English Channel. Environ Microbiol (2009) 4.30
The first RSBI (ISA-TAB) workshop: "can a simple format work for complex studies?". OMICS (2008) 4.15
The Genomic Standards Consortium. PLoS Biol (2011) 3.99
Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities. PLoS One (2008) 3.83
Laying the foundation for a Genomic Rosetta Stone: creating information hubs through the use of consensus identifiers. OMICS (2008) 3.71
Genome Information Broker (GIB): data retrieval and comparative analysis system for completed microbial genomes and more. Nucleic Acids Res (2002) 3.67
Development of FuGO: an ontology for functional genomics investigations. OMICS (2006) 3.59
A strategy capitalizing on synergies: the Reporting Structure for Biological Investigation (RSBI) working group. OMICS (2006) 3.51
DDBJ progress report. Nucleic Acids Res (2010) 3.34
Megx.net--database resources for marine ecological genomics. Nucleic Acids Res (2006) 3.09
A standard MIGS/MIMS compliant XML Schema: toward the development of the Genomic Contextual Data Markup Language (GCDML). OMICS (2008) 2.82
Concept of sample in OMICS technology. OMICS (2006) 2.74
VertNet: a new model for biodiversity data sharing. PLoS Biol (2010) 2.71
The metabolomics standards initiative. Nat Biotechnol (2007) 2.54
Exploration and grading of possible genes from 183 bacterial strains by a common protocol to identification of new genes: Gene Trek in Prokaryote Space (GTPS). DNA Res (2006) 2.51
The taxonomic and functional diversity of microbes at a temperate coastal site: a 'multi-omic' study of seasonal and diel temporal variation. PLoS One (2010) 2.44
The Western English Channel contains a persistent microbial seed bank. ISME J (2011) 2.37
Modeling Alzheimer's disease with iPSCs reveals stress phenotypes associated with intracellular Aβ and differential drug responsiveness. Cell Stem Cell (2013) 2.32
A new amyloid beta variant favoring oligomerization in Alzheimer's-type dementia. Ann Neurol (2008) 2.32
BioGeomancer: automated georeferencing to map the world's biodiversity data. PLoS Biol (2006) 2.31
TDP-43 is deposited in the Guam parkinsonism-dementia complex brains. Brain (2007) 2.25
Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community. BMC Bioinformatics (2012) 2.22
A mouse model of amyloid beta oligomers: their contribution to synaptic alteration, abnormal tau phosphorylation, glial activation, and neuronal loss in vivo. J Neurosci (2010) 2.22
Megx.net: integrated database resource for marine ecological genomics. Nucleic Acids Res (2009) 2.12
Toward a standards-compliant genomic and metagenomic publication record. OMICS (2008) 2.11
Unlocking the potential of metagenomics through replicated experimental design. Nat Biotechnol (2012) 2.08
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Nucleic Acids Res (2007) 2.07
Meeting report: eGenomics: Cataloguing our Complete Genome Collection II. OMICS (2006) 2.05
A decadal view of biodiversity informatics: challenges and priorities. BMC Ecol (2013) 2.01
The United States of America and scientific research. PLoS One (2010) 1.98
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res (2010) 1.97
maxdLoad2 and maxdBrowse: standards-compliant tools for microarray experimental annotation, data management and dissemination. BMC Bioinformatics (2005) 1.94
Meeting Report from the Genomic Standards Consortium (GSC) Workshops 6 and 7. Stand Genomic Sci (2009) 1.89
Web API for biology with a workflow navigation system. Nucleic Acids Res (2009) 1.86
Longitudinal, quantitative assessment of amyloid, neuroinflammation, and anti-amyloid treatment in a living mouse model of Alzheimer's disease enabled by positron emission tomography. J Neurosci (2007) 1.85
Novel phylogenetic studies of genomic sequence fragments derived from uncultured microbe mixtures in environmental and clinical samples. DNA Res (2006) 1.84
Altered metabolism of the amyloid beta precursor protein is associated with mitochondrial dysfunction in Down's syndrome. Neuron (2002) 1.82
Evidence for a persistent microbial seed bank throughout the global ocean. Proc Natl Acad Sci U S A (2013) 1.78
The environment ontology: contextualising biological and biomedical entities. J Biomed Semantics (2013) 1.76
EBI metagenomics--a new resource for the analysis and archiving of metagenomic data. Nucleic Acids Res (2013) 1.74
RCN4GSC Workshop Report: Managing Data at the Interface of Biodiversity and (Meta)Genomics, March 2011. Stand Genomic Sci (2012) 1.73
Meeting report: the fifth Genomic Standards Consortium (GSC) workshop. OMICS (2008) 1.66
PlantTribes: a gene and gene family resource for comparative genomics in plants. Nucleic Acids Res (2007) 1.65
Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota. Nat Commun (2013) 1.65
Annotation of environmental OMICS data: application to the transcriptomics domain. OMICS (2006) 1.62
The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools. BMC Bioinformatics (2012) 1.61
Inverse correlation between amyloid precursor protein and synaptic plasticity in transgenic mice. Neuroreport (2007) 1.60
A call for standardized classification of metagenome projects. Environ Microbiol (2010) 1.58
Quantitative prediction of NF-kappa B DNA-protein interactions. Proc Natl Acad Sci U S A (2002) 1.54
Supervised classification of microbiota mitigates mislabeling errors. ISME J (2010) 1.54
The genomic standards consortium: bringing standards to life for microbial ecology. ISME J (2011) 1.52
Predicting bacterial community assemblages using an artificial neural network approach. Nat Methods (2012) 1.51
A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes. Syst Appl Microbiol (2008) 1.48
Genome-organizing factors Top2 and Hmo1 prevent chromosome fragility at sites of S phase transcription. Cell (2009) 1.48
Meeting Report: BioSharing at ISMB 2010. Stand Genomic Sci (2010) 1.47