Published in RNA Biol on April 15, 2013
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Long non-coding RNA HOTAIR in carcinogenesis and metastasis. Acta Biochim Biophys Sin (Shanghai) (2013) 1.23
A potential signature of eight long non-coding RNAs predicts survival in patients with non-small cell lung cancer. J Transl Med (2015) 1.21
LncRNA HOTAIR: A master regulator of chromatin dynamics and cancer. Biochim Biophys Acta (2015) 1.21
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Chromatin-associated ncRNA activities. Chromosome Res (2013) 0.86
Long non-coding RNA in glioma: signaling pathways. Oncotarget (2017) 0.86
A novel long non-coding RNA FOXCUT and mRNA FOXC1 pair promote progression and predict poor prognosis in esophageal squamous cell carcinoma. Int J Clin Exp Pathol (2014) 0.85
Long noncoding RNAs in innate immunity. Cell Mol Immunol (2015) 0.85
Long Non-Coding RNAs in Endometrial Carcinoma. Int J Mol Sci (2015) 0.84
Mechanism of Wnt signaling induced down regulation of mrhl long non-coding RNA in mouse spermatogonial cells. Nucleic Acids Res (2015) 0.84
Genome-wide identification of long noncoding RNAs in rat models of cardiovascular and renal disease. Hypertension (2014) 0.83
Minireview: Long noncoding RNAs: new "links" between gene expression and cellular outcomes in endocrinology. Mol Endocrinol (2013) 0.83
Noncoding RNAs and atherosclerosis. Curr Atheroscler Rep (2014) 0.82
Long Noncoding RNA in Digestive Tract Cancers: Function, Mechanism, and Potential Biomarker. Oncologist (2015) 0.82
Long non-coding RNAs and their biological roles in plants. Genomics Proteomics Bioinformatics (2015) 0.82
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LncRNAs act as prognostic and diagnostic biomarkers in renal cell carcinoma: a systematic review and meta-analysis. Oncotarget (2016) 0.81
Clinical significance of long noncoding RNA SPRY4-IT1 in melanoma patients. FEBS Open Bio (2016) 0.81
Short stories on zebrafish long noncoding RNAs. Zebrafish (2014) 0.81
Identification of 4438 novel lincRNAs involved in mouse pre-implantation embryonic development. Mol Genet Genomics (2014) 0.81
Long noncoding RNAs in hepatocellular carcinoma: Novel insights into their mechanism. World J Hepatol (2015) 0.79
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Regulatory Roles of Non-Coding RNAs in Colorectal Cancer. Int J Mol Sci (2015) 0.79
Current Status of Long Non-Coding RNAs in Human Breast Cancer. Int J Mol Sci (2016) 0.79
Genome-wide long non-coding RNA screening, identification and characterization in a model microorganism Chlamydomonas reinhardtii. Sci Rep (2016) 0.78
Noncoding RNAs in the regulation of skeletal muscle biology in health and disease. J Mol Med (Berl) (2016) 0.78
FARNA: knowledgebase of inferred functions of non-coding RNA transcripts. Nucleic Acids Res (2016) 0.78
Differentially expressed lncRNAs and mRNAs identified by microarray analysis in GBS patients vs healthy controls. Sci Rep (2016) 0.78
Differential Expression of Long Noncoding RNAs between Sperm Samples from Diabetic and Non-Diabetic Mice. PLoS One (2016) 0.78
Long Noncoding RNAs in Digestive System Malignancies: A Novel Class of Cancer Biomarkers and Therapeutic Targets? Gastroenterol Res Pract (2015) 0.78
Identifying and functionally characterizing tissue-specific and ubiquitously expressed human lncRNAs. Oncotarget (2016) 0.77
Altered Long Noncoding RNA Expression Precedes the Course of Parkinson's Disease-a Preliminary Report. Mol Neurobiol (2016) 0.77
Genome-wide identification of potato long intergenic noncoding RNAs responsive to Pectobacterium carotovorum subspecies brasiliense infection. BMC Genomics (2016) 0.77
LncRNA BCAR4 wires up signaling transduction in breast cancer. RNA Biol (2015) 0.77
Regulatory non-coding RNA: new instruments in the orchestration of cell death. Cell Death Dis (2016) 0.77
Identification of long noncoding RNAs for the detection of early stage lung squamous cell carcinoma by microarray analysis. Oncotarget (2017) 0.77
HOTAIR, a long non-coding RNA driver of malignancy whose expression is activated by FOXC1, negatively regulates miRNA-1 in hepatocellular carcinoma. Oncol Lett (2016) 0.77
LncRNA16 is a potential biomarker for diagnosis of early-stage lung cancer that promotes cell proliferation by regulating the cell cycle. Oncotarget (2017) 0.76
Exploring the stability of long intergenic non-coding RNA in K562 cells by comparative studies of RNA-Seq datasets. Biol Direct (2014) 0.76
Identification of long non-coding transcripts with feature selection: a comparative study. BMC Bioinformatics (2017) 0.75
Genome-wide identification of lncRNAs associated with chlorantraniliprole resistance in diamondback moth Plutella xylostella (L.). BMC Genomics (2017) 0.75
Non-coding RNAs and hypertension-unveiling unexpected mechanisms of hypertension by the dark matter of the genome. Curr Hypertens Rev (2015) 0.75
A molecular conundrum involving hypothalamic responses to and roles of long non-coding RNAs following food deprivation. Mol Cell Endocrinol (2016) 0.75
Genome-wide analysis of differentially expressed lncRNAs and mRNAs in primary gonadotrophin adenomas by RNA-seq. Oncotarget (2016) 0.75
Long non-coding RNA normalisers in human brain tissue. J Neural Transm (Vienna) (2014) 0.75
Systematic identification and characterization of cardiac long intergenic noncoding RNAs in zebrafish. Sci Rep (2017) 0.75
The prognostic value of long noncoding RNAs in prostate cancer: a systematic review and meta-analysis. Oncotarget (2017) 0.75
Overexpression of long noncoding RNA PEG10 promotes proliferation, invasion and metastasis of hypopharyngeal squamous cell carcinoma. Oncol Lett (2017) 0.75
LncRNA ODRUL Contributes to Osteosarcoma Progression through the miR-3182/MMP2 Axis. Mol Ther (2017) 0.75
Non-coding RNAs: new biomarkers and therapeutic targets for esophageal cancer. Oncotarget (2017) 0.75
TUG1 promotes osteosarcoma tumorigenesis by upregulating EZH2 expression via miR-144-3p. Int J Oncol (2017) 0.75
Exon Mapping in Long Noncoding RNAs Using Digital Filters. Genomics Insights (2017) 0.75
Modulation of IGF2BP1 by long non-coding RNA HCG11 suppresses apoptosis of hepatocellular carcinoma cells via MAPK signaling transduction. Int J Oncol (2017) 0.75
Long non-coding RNAs in hepatocellular carcinoma: Potential roles and clinical implications. World J Gastroenterol (2017) 0.75
Identification of long non-coding RNA in rice lines resistant to Rice blast pathogen Maganaporthe oryzae. Bioinformation (2017) 0.75
The difference in expression of long noncoding RNAs in rat semen induced by high-fat diet was associated with metabolic pathways. PeerJ (2017) 0.75
Long non-coding RNAs in cutaneous melanoma: clinical perspectives. Oncotarget (2017) 0.75
DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining. RNA Biol (2017) 0.75
Fingerprint of long non-coding RNA regulated by cyclic mechanical stretch in human aortic smooth muscle cells: implications for hypertension. Mol Cell Biochem (2017) 0.75
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Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature (2009) 35.48
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell (2007) 30.22
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The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res (2012) 15.41
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A coding-independent function of gene and pseudogene mRNAs regulates tumour biology. Nature (2010) 13.82
Long noncoding RNAs with enhancer-like function in human cells. Cell (2010) 13.00
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell (2010) 12.27
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression. Nature (2011) 11.59
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Target mimicry provides a new mechanism for regulation of microRNA activity. Nat Genet (2007) 9.48
A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA. Cell (2011) 9.24
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The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol Cell (2010) 8.66
The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin. Science (2008) 8.45
Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22. Genome Res (2004) 8.35
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Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene. Nature (2004) 6.83
Most "dark matter" transcripts are associated with known genes. PLoS Biol (2010) 6.60
Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression. Nat Biotechnol (2011) 6.54
An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma. Cell (2011) 5.75
Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters. Nat Genet (2011) 5.62
Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase. Nat Med (2008) 5.62
Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript. Nature (2007) 5.57
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Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells. Nat Genet (2010) 5.37
The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcription. Nature (2001) 5.14
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7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexes. Nature (2001) 5.11
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MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles. Genome Res (2008) 5.06
The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator. Genes Dev (2006) 4.94
Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor. Sci Signal (2010) 4.77
CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer. Nucleic Acids Res (2010) 4.68
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Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA. Science (2010) 4.23
A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition. Genes Dev (2008) 3.85
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Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target. Nature (2009) 2.97
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The imprinted H19 noncoding RNA is a primary microRNA precursor. RNA (2007) 2.91
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Long noncoding RNAs are rarely translated in two human cell lines. Genome Res (2012) 2.64
B2 RNA binds directly to RNA polymerase II to repress transcript synthesis. Nat Struct Mol Biol (2004) 2.59
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A noncoding RNA is a potential marker of cell fate during mammary gland development. Proc Natl Acad Sci U S A (2006) 1.94
Long noncoding RNAs in cell biology. Semin Cell Dev Biol (2011) 1.86
Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells. RNA (2009) 1.78
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miR-31 and its host gene lncRNA LOC554202 are regulated by promoter hypermethylation in triple-negative breast cancer. Mol Cancer (2012) 1.72
Growth arrest in human T-cells is controlled by the non-coding RNA growth-arrest-specific transcript 5 (GAS5). J Cell Sci (2008) 1.71
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HOCOMOCO: a comprehensive collection of human transcription factor binding sites models. Nucleic Acids Res (2012) 1.45
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Classifying the estrogen receptor status of breast cancers by expression profiles reveals a poor prognosis subpopulation exhibiting high expression of the ERBB2 receptor. Hum Mol Genet (2003) 1.34
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Database for exploration of functional context of genes implicated in ovarian cancer. Nucleic Acids Res (2008) 1.21
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Ordered arrays of vertically aligned [110] silicon nanowires by suppressing the crystallographically preferred <100> etching directions. Nano Lett (2009) 1.19
An early response regulatory cluster induced by low temperature and hydrogen peroxide in seedlings of chilling-tolerant japonica rice. BMC Genomics (2007) 1.18
Toward an understanding of the molecular mechanisms of barnacle larval settlement: a comparative transcriptomic approach. PLoS One (2011) 1.17
Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress. BMC Plant Biol (2010) 1.17
Enhancement of plant-microbe interactions using a rhizosphere metabolomics-driven approach and its application in the removal of polychlorinated biphenyls. Plant Physiol (2003) 1.17
Deciphering the transcriptional circuitry of microRNA genes expressed during human monocytic differentiation. BMC Genomics (2009) 1.14
On the molecular mechanism of GC content variation among eubacterial genomes. Biol Direct (2012) 1.13
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PanGP: a tool for quickly analyzing bacterial pan-genome profile. Bioinformatics (2014) 1.10
Dragon TF Association Miner: a system for exploring transcription factor associations through text-mining. Nucleic Acids Res (2004) 1.09
Discovery and optimization of 3-(2-(Pyrazolo[1,5-a]pyrimidin-6-yl)ethynyl)benzamides as novel selective and orally bioavailable discoidin domain receptor 1 (DDR1) inhibitors. J Med Chem (2013) 1.08
DDPC: Dragon Database of Genes associated with Prostate Cancer. Nucleic Acids Res (2010) 1.07
TcoF-DB: dragon database for human transcription co-factors and transcription factor interacting proteins. Nucleic Acids Res (2010) 1.05
Symbiotic adaptation drives genome streamlining of the cyanobacterial sponge symbiont "Candidatus Synechococcus spongiarum". MBio (2014) 1.04
Downregulation of tumor suppressor QKI in gastric cancer and its implication in cancer prognosis. Biochem Biophys Res Commun (2012) 1.03
The response and recovery of the Arabidopsis thaliana transcriptome to phosphate starvation. BMC Plant Biol (2012) 1.03
E2F5 status significantly improves malignancy diagnosis of epithelial ovarian cancer. BMC Cancer (2010) 1.02
Systems biology of innate immunity. Cell Immunol (2007) 1.01
Distinct contributions of replication and transcription to mutation rate variation of human genomes. Genomics Proteomics Bioinformatics (2012) 1.01
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Detection and preliminary analysis of motifs in promoters of anaerobically induced genes of different plant species. Ann Bot (2005) 0.99
Nucleotide compositional asymmetry between the leading and lagging strands of eubacterial genomes. Res Microbiol (2010) 0.98
Protein domain recurrence and order can enhance prediction of protein functions. Bioinformatics (2012) 0.97
Compositional dynamics of guanine and cytosine content in prokaryotic genomes. Res Microbiol (2007) 0.97
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Fat-forming variant of solitary fibrous tumor of the mediastinum. Chin Med J (Engl) (2007) 0.96
Mutant human myocilin induces strain specific differences in ocular hypertension and optic nerve damage in mice. Exp Eye Res (2012) 0.96
HCVpro: hepatitis C virus protein interaction database. Infect Genet Evol (2011) 0.95
Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development. Plant Cell Environ (2010) 0.94
Survivin knockdown enhances gastric cancer cell sensitivity to radiation and chemotherapy in vitro and in nude mice. Am J Med Sci (2012) 0.93
Terminal amino acids disturb xylanase thermostability and activity. J Biol Chem (2011) 0.93
Correlation between Ka/Ks and Ks is related to substitution model and evolutionary lineage. J Mol Evol (2009) 0.92
Unique prokaryotic consortia in geochemically distinct sediments from Red Sea Atlantis II and discovery deep brine pools. PLoS One (2012) 0.92
Computational selection and prioritization of candidate genes for fetal alcohol syndrome. BMC Genomics (2007) 0.92
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Spontaneous fractures in the mouse mutant sfx are caused by deletion of the gulonolactone oxidase gene, causing vitamin C deficiency. J Bone Miner Res (2005) 0.92
Comparing memory-efficient genome assemblers on stand-alone and cloud infrastructures. PLoS One (2013) 0.92
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Exploration of miRNA families for hypotheses generation. Sci Rep (2013) 0.92
MicroRNA-335 inhibits invasion and metastasis of colorectal cancer by targeting ZEB2. Med Oncol (2014) 0.91
Comparative analyses of H3K4 and H3K27 trimethylations between the mouse cerebrum and testis. Genomics Proteomics Bioinformatics (2012) 0.91
A polysaccharide, MDG-1, induces S1P1 and bFGF expression and augments survival and angiogenesis in the ischemic heart. Glycobiology (2009) 0.91
dPORE-miRNA: polymorphic regulation of microRNA genes. PLoS One (2011) 0.91
Recently confirmed apoptosis-inducing lead compounds isolated from marine sponge of potential relevance in cancer treatment. Mar Drugs (2011) 0.91
Genome sequence of Haloplasma contractile, an unusual contractile bacterium from a deep-sea anoxic brine lake. J Bacteriol (2011) 0.89
Promoter modeling: the case study of mammalian histone promoters. Bioinformatics (2005) 0.89
Identification of human HK genes and gene expression regulation study in cancer from transcriptomics data analysis. PLoS One (2013) 0.88
Characterization of streptonigrin biosynthesis reveals a cryptic carboxyl methylation and an unusual oxidative cleavage of a N-C bond. J Am Chem Soc (2013) 0.88
Design, synthesis, and biological evaluation of novel conformationally constrained inhibitors targeting epidermal growth factor receptor threonine⁷⁹⁰ → methionine⁷⁹⁰ mutant. J Med Chem (2012) 0.87
Computational method for discovery of estrogen responsive genes. Nucleic Acids Res (2004) 0.87
DDESC: Dragon database for exploration of sodium channels in human. BMC Genomics (2008) 0.87
Simplified method to predict mutual interactions of human transcription factors based on their primary structure. PLoS One (2011) 0.86
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Information and sequence extraction around the 5'-end and translation initiation site of human genes. In Silico Biol (2002) 0.86
Gibberellic acid and cGMP-dependent transcriptional regulation in Arabidopsis thaliana. Plant Signal Behav (2010) 0.86
Cytotoxicity and apoptosis induced by a plumbagin derivative in estrogen positive MCF-7 breast cancer cells. Anticancer Agents Med Chem (2014) 0.85
Bioactive compounds from the seeds of Punica granatum (pomegranate). J Nat Prod (2004) 0.84
KBERG: KnowledgeBase for Estrogen Responsive Genes. Nucleic Acids Res (2006) 0.84
WSS25 inhibits growth of xenografted hepatocellular cancer cells in nude mice by disrupting angiogenesis via blocking bone morphogenetic protein (BMP)/Smad/Id1 signaling. J Biol Chem (2010) 0.83
Information Commons for Rice (IC4R). Nucleic Acids Res (2015) 0.83
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Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes. BMC Bioinformatics (2006) 0.83
An angiographic technique for coronary fractional flow reserve measurement: in vivo validation. Int J Cardiovasc Imaging (2012) 0.83
Anti-cancer activities of diospyrin, its derivatives and analogues. Eur J Med Chem (2010) 0.82
Poly(A) motif prediction using spectral latent features from human DNA sequences. Bioinformatics (2013) 0.82
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Paravertebral glomangiomatosis. Case report. J Neurosurg (2009) 0.81
Rechargeable Li-CO2 batteries with carbon nanotubes as air cathodes. Chem Commun (Camb) (2015) 0.81
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Genome Sequence of Pseudomonas sp. Strain Chol1, a Model Organism for the Degradation of Bile Salts and Other Steroid Compounds. Genome Announc (2013) 0.81
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