Published in Trends Ecol Evol on July 01, 2013
Data availability constrains model complexity, generality, and utility: a response to Evans et al. Trends Ecol Evol (2014) 1.31
Predictive systems ecology. Proc Biol Sci (2013) 1.09
Data availability and model complexity, generality, and utility: a reply to Lonergan. Trends Ecol Evol (2014) 0.95
Advancing microbial sciences by individual-based modelling. Nat Rev Microbiol (2016) 0.91
Effects of growth rate, size, and light availability on tree survival across life stages: a demographic analysis accounting for missing values and small sample sizes. BMC Ecol (2015) 0.89
Making Predictions in a Changing World: The Benefits of Individual-Based Ecology. Bioscience (2014) 0.81
A combined within-host and between-hosts modelling framework for the evolution of resistance to antimalarial drugs. J R Soc Interface (2016) 0.79
Allometry and growth of eight tree taxa in United Kingdom woodlands. Sci Data (2015) 0.79
What happens after inbreeding avoidance? Inbreeding by rejected relatives and the inclusive fitness benefit of inbreeding avoidance. PLoS One (2015) 0.79
Visualizing the indefinable: three-dimensional complexity of 'infectious diseases'. PLoS One (2015) 0.78
Skill learning and the evolution of social learning mechanisms. BMC Evol Biol (2016) 0.78
On some genetic consequences of social structure, mating systems, dispersal, and sampling. Proc Natl Acad Sci U S A (2015) 0.76
Fish attraction to artificial reefs not always harmful: a simulation study. Ecol Evol (2015) 0.75
Sensitivity analysis of Repast computational ecology models with R/Repast. Ecol Evol (2016) 0.75
A comparison between data requirements and availability for calibrating predictive ecological models for lowland UK woodlands: learning new tricks from old trees. Ecol Evol (2016) 0.75
Strong Inference in Mathematical Modeling: A Method for Robust Science in the Twenty-First Century. Front Microbiol (2016) 0.75
Response to: Neurotoxicity of paraquat and paraquat-induced Parkinson's disease. Lab Invest (2016) 0.75
Progress and challenges in coupled hydrodynamic-ecological estuarine modeling. (2015) 0.75
An Integrated Framework for Process-Driven Model Construction in Disease Ecology and Animal Health. Front Vet Sci (2017) 0.75
Causes and consequences of animal dispersal strategies: relating individual behaviour to spatial dynamics. Biol Rev Camb Philos Soc (2005) 7.02
Costs of dispersal. Biol Rev Camb Philos Soc (2011) 3.69
Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions. J Integr Bioinform (2015) 3.61
Scaling up from gardens: biodiversity conservation in urban environments. Trends Ecol Evol (2009) 3.50
Controlled vocabularies and semantics in systems biology. Mol Syst Biol (2011) 2.79
Prokaryotic evolution and the tree of life are two different things. Biol Direct (2009) 2.17
Ecosystem oceanography for global change in fisheries. Trends Ecol Evol (2008) 2.00
The dynamics of phenotypic change and the shrinking sheep of St. Kilda. Science (2009) 1.99
Central assumptions of predator-prey models fail in a semi-natural experimental system. Proc Biol Sci (2004) 1.95
Towards a systems approach for understanding honeybee decline: a stocktaking and synthesis of existing models. J Appl Ecol (2013) 1.81
Deleterious mutations can surf to high densities on the wave front of an expanding population. Mol Biol Evol (2007) 1.79
Systems medicine and integrated care to combat chronic noncommunicable diseases. Genome Med (2011) 1.78
Talkin' 'bout my generation: environmental variability and cohort effects. Am Nat (2003) 1.67
Context-dependent intergenerational effects: the interaction between past and present environments and its effect on population dynamics. Am Nat (2005) 1.67
Scale matters: the impact of organic farming on biodiversity at different spatial scales. Ecol Lett (2010) 1.51
Minimum Information About a Simulation Experiment (MIASE). PLoS Comput Biol (2011) 1.48
Accelerating invasion rates result from the evolution of density-dependent dispersal. J Theor Biol (2009) 1.48
Incidence and effects of genetic factors on canine impaction in an isolated Jewish population. Am J Orthod Dentofacial Orthop (2011) 1.46
Bayesian parameter inference for stochastic biochemical network models using particle Markov chain Monte Carlo. Interface Focus (2011) 1.38
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core. J Integr Bioinform (2015) 1.37
Comparing organic farming and land sparing: optimizing yield and butterfly populations at a landscape scale. Ecol Lett (2010) 1.32
Ecological models supporting environmental decision making: a strategy for the future. Trends Ecol Evol (2010) 1.30
The SBML discrete stochastic models test suite. Bioinformatics (2007) 1.30
Bayesian sequential inference for stochastic kinetic biochemical network models. J Comput Biol (2006) 1.29
Age and size at maturity: sex, environmental variability and developmental thresholds. Proc Biol Sci (2004) 1.27
Does red noise increase or decrease extinction risk? Single extreme events versus series of unfavorable conditions. Am Nat (2006) 1.26
Colonyzer: automated quantification of micro-organism growth characteristics on solid agar. BMC Bioinformatics (2010) 1.25
Sperm competition games: a general model for precopulatory male-male competition. Evolution (2012) 1.24
Tools for the SBML Community. Bioinformatics (2006) 1.19
Predictive ecology: systems approaches. Philos Trans R Soc Lond B Biol Sci (2012) 1.18
Variation in dispersal mortality and dispersal propensity among individuals: the effects of age, sex and resource availability. J Anim Ecol (2009) 1.16
Mechanistic effect models for ecological risk assessment of chemicals (MEMoRisk)-a new SETAC-Europe Advisory Group. Environ Sci Pollut Res Int (2009) 1.15
Investigations into the analysis and modeling of the TNF alpha-mediated NF-kappa B-signaling pathway. Genome Res (2003) 1.12
Towards an e-biology of ageing: integrating theory and data. Nat Rev Mol Cell Biol (2003) 1.11
Quantitative modelling of amyloidogenic processing and its influence by SORLA in Alzheimer's disease. EMBO J (2011) 1.10
Predictive systems ecology. Proc Biol Sci (2013) 1.09
Predicting population dynamics from the properties of individuals: a cross-level test of dynamic energy budget theory. Am Nat (2013) 1.09
Optimal sampling time selection for parameter estimation in dynamic pathway modeling. Biosystems (2004) 1.08
Modelling the actions of chaperones and their role in ageing. Mech Ageing Dev (2005) 1.07
How effective are maternal effects at having effects? Proc Biol Sci (2006) 1.07
A protocol for better design, application, and communication of population viability analyses. Conserv Biol (2013) 1.05
How to put all your eggs in one basket: empirical patterns of offspring provisioning throughout a mother's lifetime. Am Nat (2007) 1.05
Ecological models in support of regulatory risk assessments of pesticides: developing a strategy for the future. Integr Environ Assess Manag (2009) 1.04
Extinction risk, coloured noise and the scaling of variance. Theor Popul Biol (2005) 1.04
Eco-evolutionary dynamics in response to selection on life-history. Ecol Lett (2013) 1.04
Comparison of pollinators and natural enemies: a meta-analysis of landscape and local effects on abundance and richness in crops. Biol Rev Camb Philos Soc (2013) 1.03
Chemical and natural stressors combined: from cryptic effects to population extinction. Sci Rep (2013) 1.03
Analysing the impact of nucleo-cytoplasmic shuttling of β-catenin and its antagonists APC, Axin and GSK3 on Wnt/β-catenin signalling. Cell Signal (2013) 1.02
Mathematical modelling of interferon-gamma signalling in pancreatic stellate cells reflects and predicts the dynamics of STAT1 pathway activity. Cell Signal (2009) 1.02
Mighty small: Observing and modeling individual microbes becomes big science. Proc Natl Acad Sci U S A (2013) 1.01
Computational analysis of target hub gene repression regulated by multiple and cooperative miRNAs. Nucleic Acids Res (2012) 1.00
Breeding synchrony in colonial birds: from local stress to global harmony. Proc Biol Sci (2008) 0.99
Kinetic modeling-based detection of genetic signatures that provide chemoresistance via the E2F1-p73/DNp73-miR-205 network. Cancer Res (2013) 0.98
MicroRNA-mRNA interactions in colorectal cancer and their role in tumor progression. Genes Chromosomes Cancer (2015) 0.97
Unifying wildfire models from ecology and statistical physics. Am Nat (2009) 0.97
Ecological models and pesticide risk assessment: current modeling practice. Environ Toxicol Chem (2010) 0.96
Understanding shifts in wildfire regimes as emergent threshold phenomena. Am Nat (2011) 0.96
Systems biology of JAK-STAT signalling in human malignancies. Prog Biophys Mol Biol (2011) 0.96
Neutral communities may lead to decreasing diversity-disturbance relationships: insights from a generic simulation model. Ecol Lett (2011) 0.96
Surface ablation techniques. J Cataract Refract Surg (2011) 0.95
Bird sky networks: how do avian scavengers use social information to find carrion? Ecology (2014) 0.95
Gene expression in low- and high-dose-irradiated human peripheral blood lymphocytes: possible applications for biodosimetry. Radiat Res (2012) 0.94
Enlightening the life sciences: the history of halobacterial and microbial rhodopsin research. FEMS Microbiol Rev (2011) 0.93
A systems biology approach to investigate the effect of pH-induced gene regulation on solvent production by Clostridium acetobutylicum in continuous culture. BMC Syst Biol (2011) 0.93
Extrapolating ecotoxicological effects from individuals to populations: a generic approach based on Dynamic Energy Budget theory and individual-based modeling. Ecotoxicology (2013) 0.93
Approximations and their consequences for dynamic modelling of signal transduction pathways. Math Biosci (2006) 0.93
Microarray data clustering based on temporal variation: FCV with TSD preclustering. Appl Bioinformatics (2003) 0.93
Ecological-economic modeling for biodiversity management: potential, pitfalls, and prospects. Conserv Biol (2006) 0.93
A genome wide analysis of the response to uncapped telomeres in budding yeast reveals a novel role for the NAD+ biosynthetic gene BNA2 in chromosome end protection. Genome Biol (2008) 0.93
Switching feedback mechanisms realize the dual role of MCIP in the regulation of calcineurin activity. FEBS Lett (2006) 0.92
A frequency-based gene selection method to identify robust biomarkers for radiation dose prediction. Int J Radiat Biol (2012) 0.92
The multikinase inhibitor Sorafenib displays significant antiproliferative effects and induces apoptosis via caspase 3, 7 and PARP in B- and T-lymphoblastic cells. BMC Cancer (2010) 0.91
Studies on mechanisms of interferon-gamma action in pancreatic cancer using a data-driven and model-based approach. Mol Cancer (2011) 0.91
Integrating population modeling into ecological risk assessment. Integr Environ Assess Manag (2010) 0.90
Hutchinson revisited: patterns of density regulation and the coexistence of strong competitors. J Theor Biol (2009) 0.90
Improving the reuse of computational models through version control. Bioinformatics (2013) 0.89
Investigating dynamics of inhibitory and feedback loops in ERK signalling using power-law models. Mol Biosyst (2010) 0.89
2-DE profiling of GDNF overexpression-related proteome changes in differentiating ST14A rat progenitor cells. Proteomics (2007) 0.89
Power-law models of signal transduction pathways. Cell Signal (2007) 0.89
Dynamic energy budget approaches for modelling organismal ageing. Philos Trans R Soc Lond B Biol Sci (2010) 0.89
Clinico-pathologic function of cerebral ABC transporters - implications for the pathogenesis of Alzheimer's disease. Curr Alzheimer Res (2008) 0.88
Dispersal networks for enhancing bacterial degradation in heterogeneous environments. Environ Pollut (2011) 0.88
Dynamics of biological systems: role of systems biology in medical research. Expert Rev Mol Diagn (2006) 0.88
Plant interactions alter the predictions of metabolic scaling theory. PLoS One (2013) 0.87
SBML export interface for the systems biology toolbox for MATLAB. Bioinformatics (2007) 0.87
Cyclic dynamics in simulated plant populations. Proc Biol Sci (2002) 0.87
How Modeling Standards, Software, and Initiatives Support Reproducibility in Systems Biology and Systems Medicine. IEEE Trans Biomed Eng (2016) 0.87
A shift in the dominant phenotype governs the pH-induced metabolic switch of Clostridium acetobutylicumin phosphate-limited continuous cultures. Appl Microbiol Biotechnol (2013) 0.86
MicroRNA-regulated networks: the perfect storm for classical molecular biology, the ideal scenario for systems biology. Adv Exp Med Biol (2013) 0.86
A systems biology approach to analyse amplification in the JAK2-STAT5 signalling pathway. BMC Syst Biol (2008) 0.86
Identification of immunogenic consensus T-cell epitopes in globally distributed influenza-A H1N1 neuraminidase. Infect Genet Evol (2010) 0.86
A unified framework for unraveling the functional interaction structure of a biomolecular network based on stimulus-response experimental data. FEBS Lett (2005) 0.86
Parameter identifiability and sensitivity analysis predict targets for enhancement of STAT1 activity in pancreatic cancer and stellate cells. PLoS Comput Biol (2012) 0.86
Non-coding RNA detection methods combined to improve usability, reproducibility and precision. BMC Bioinformatics (2010) 0.86
CaliBayes and BASIS: integrated tools for the calibration, simulation and storage of biological simulation models. Brief Bioinform (2010) 0.86
Moment closure approximations for stochastic kinetic models with rational rate laws. Math Biosci (2011) 0.85
PLMaddon: a power-law module for the Matlab SBToolbox. Bioinformatics (2007) 0.85
Genome-wide analysis to identify pathways affecting telomere-initiated senescence in budding yeast. G3 (Bethesda) (2011) 0.85