Published in Appl Microbiol Biotechnol on May 03, 2013
Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress. BMC Syst Biol (2013) 1.01
Improved n-butanol production by a non-acetone producing Clostridium pasteurianum DSMZ 525 in mixed substrate fermentation. Appl Microbiol Biotechnol (2014) 0.85
Artificial symbiosis for acetone-butanol-ethanol (ABE) fermentation from alkali extracted deshelled corn cobs by co-culture of Clostridium beijerinckii and Clostridium cellulovorans. Microb Cell Fact (2014) 0.79
Redox-switch regulatory mechanism of thiolase from Clostridium acetobutylicum. Nat Commun (2015) 0.76
Kinetic Study of Acetone-Butanol-Ethanol Fermentation in Continuous Culture. PLoS One (2016) 0.75
Mathematical modelling of clostridial acetone-butanol-ethanol fermentation. Appl Microbiol Biotechnol (2017) 0.75
Do simple models lead to generality in ecology? Trends Ecol Evol (2013) 2.88
Systems analysis of auxin transport in the Arabidopsis root apex. Plant Cell (2014) 1.87
Systems medicine and integrated care to combat chronic noncommunicable diseases. Genome Med (2011) 1.78
Minimum Information About a Simulation Experiment (MIASE). PLoS Comput Biol (2011) 1.48
Auxin regulates aquaporin function to facilitate lateral root emergence. Nat Cell Biol (2012) 1.44
Multiscale systems analysis of root growth and development: modeling beyond the network and cellular scales. Plant Cell (2012) 1.25
Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study. BMC Syst Biol (2010) 1.25
Metabolic engineering of Clostridium acetobutylicum: recent advances to improve butanol production. Curr Opin Biotechnol (2011) 1.24
Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination. Plant Physiol (2013) 1.23
Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism. Proc Natl Acad Sci U S A (2012) 1.22
PerR acts as a switch for oxygen tolerance in the strict anaerobe Clostridium acetobutylicum. Mol Microbiol (2008) 1.13
Investigations into the analysis and modeling of the TNF alpha-mediated NF-kappa B-signaling pathway. Genome Res (2003) 1.12
Mathematical modeling elucidates the role of transcriptional feedback in gibberellin signaling. Proc Natl Acad Sci U S A (2012) 1.12
Quantitative modelling of amyloidogenic processing and its influence by SORLA in Alzheimer's disease. EMBO J (2011) 1.10
Optimal sampling time selection for parameter estimation in dynamic pathway modeling. Biosystems (2004) 1.08
Sequential induction of auxin efflux and influx carriers regulates lateral root emergence. Mol Syst Biol (2013) 1.08
Growth-induced hormone dilution can explain the dynamics of plant root cell elongation. Proc Natl Acad Sci U S A (2012) 1.06
Modifying the product pattern of Clostridium acetobutylicum: physiological effects of disrupting the acetate and acetone formation pathways. Appl Microbiol Biotechnol (2012) 1.05
Pathway for H2O2 and O2 detoxification in Clostridium acetobutylicum. Microbiology (2009) 1.04
Auxin carriers localization drives auxin accumulation in plant cells infected by Frankia in Casuarina glauca actinorhizal nodules. Plant Physiol (2010) 1.03
Analysing the impact of nucleo-cytoplasmic shuttling of β-catenin and its antagonists APC, Axin and GSK3 on Wnt/β-catenin signalling. Cell Signal (2013) 1.02
A proteomic and transcriptional view of acidogenic and solventogenic steady-state cells of Clostridium acetobutylicum in a chemostat culture. Appl Microbiol Biotechnol (2010) 1.02
Mathematical modelling of engineered tissue growth using a multiphase porous flow mixture theory. J Math Biol (2006) 1.02
Mathematical modelling of interferon-gamma signalling in pancreatic stellate cells reflects and predicts the dynamics of STAT1 pathway activity. Cell Signal (2009) 1.02
Elucidating the interactions between the adhesive and transcriptional functions of beta-catenin in normal and cancerous cells. J Theor Biol (2007) 1.01
Extracellular glycosyl hydrolases from clostridia. Adv Appl Microbiol (2004) 1.01
Computational analysis of target hub gene repression regulated by multiple and cooperative miRNAs. Nucleic Acids Res (2012) 1.00
The redox-sensing protein Rex, a transcriptional regulator of solventogenesis in Clostridium acetobutylicum. Appl Microbiol Biotechnol (2012) 0.99
The role of PerR in O2-affected gene expression of Clostridium acetobutylicum. J Bacteriol (2009) 0.98
Diffusion about the mean drift location in a biased random walk. Ecology (2010) 0.98
Kinetic modeling-based detection of genetic signatures that provide chemoresistance via the E2F1-p73/DNp73-miR-205 network. Cancer Res (2013) 0.98
MicroRNA-mRNA interactions in colorectal cancer and their role in tumor progression. Genes Chromosomes Cancer (2015) 0.97
Reductive dioxygen scavenging by flavo-diiron proteins of Clostridium acetobutylicum. FEBS Lett (2008) 0.97
Mathematical modelling of drug transport in tumour multicell spheroids and monolayer cultures. Math Biosci (2003) 0.97
Systems biology of JAK-STAT signalling in human malignancies. Prog Biophys Mol Biol (2011) 0.96
Integration of hormonal signaling networks and mobile microRNAs is required for vascular patterning in Arabidopsis roots. Proc Natl Acad Sci U S A (2013) 0.95
A rubrerythrin-like oxidative stress protein of Clostridium acetobutylicum is encoded by a duplicated gene and identical to the heat shock protein Hsp21. FEMS Microbiol Lett (2004) 0.94
Gene expression in low- and high-dose-irradiated human peripheral blood lymphocytes: possible applications for biodosimetry. Radiat Res (2012) 0.94
Approximations and their consequences for dynamic modelling of signal transduction pathways. Math Biosci (2006) 0.93
A systems biology approach to investigate the effect of pH-induced gene regulation on solvent production by Clostridium acetobutylicum in continuous culture. BMC Syst Biol (2011) 0.93
Microarray data clustering based on temporal variation: FCV with TSD preclustering. Appl Bioinformatics (2003) 0.93
Transcription of the pst operon of Clostridium acetobutylicum is dependent on phosphate concentration and pH. J Bacteriol (2006) 0.92
Switching feedback mechanisms realize the dual role of MCIP in the regulation of calcineurin activity. FEBS Lett (2006) 0.92
A frequency-based gene selection method to identify robust biomarkers for radiation dose prediction. Int J Radiat Biol (2012) 0.92
Bdellovibrio predation in the presence of decoys: Three-way bacterial interactions revealed by mathematical and experimental analyses. Appl Environ Microbiol (2006) 0.91
The multikinase inhibitor Sorafenib displays significant antiproliferative effects and induces apoptosis via caspase 3, 7 and PARP in B- and T-lymphoblastic cells. BMC Cancer (2010) 0.91
Desulfoferrodoxin of Clostridium acetobutylicum functions as a superoxide reductase. FEBS Lett (2007) 0.91
The rubrerythrin-like protein Hsp21 of Clostridium acetobutylicum is a general stress protein. Arch Microbiol (2006) 0.91
Genome-wide gene expression analysis of the switch between acidogenesis and solventogenesis in continuous cultures of Clostridium acetobutylicum. J Mol Microbiol Biotechnol (2011) 0.91
Studies on mechanisms of interferon-gamma action in pancreatic cancer using a data-driven and model-based approach. Mol Cancer (2011) 0.91
Mathematical modelling of the sporulation-initiation network in Bacillus subtilis revealing the dual role of the putative quorum-sensing signal molecule PhrA. Bull Math Biol (2010) 0.89
Dynamic energy budget approaches for modelling organismal ageing. Philos Trans R Soc Lond B Biol Sci (2010) 0.89
2-DE profiling of GDNF overexpression-related proteome changes in differentiating ST14A rat progenitor cells. Proteomics (2007) 0.89
Investigating dynamics of inhibitory and feedback loops in ERK signalling using power-law models. Mol Biosyst (2010) 0.89
A multiple timescale analysis of a mathematical model of the Wnt/beta-catenin signalling pathway. J Math Biol (2009) 0.89
Vertex-element models for anisotropic growth of elongated plant organs. Front Plant Sci (2013) 0.89
Power-law models of signal transduction pathways. Cell Signal (2007) 0.89
A transcriptional study of acidogenic chemostat cells of Clostridium acetobutylicum--solvent stress caused by a transient n-butanol pulse. J Biotechnol (2012) 0.89
Improving the reuse of computational models through version control. Bioinformatics (2013) 0.89
Clinico-pathologic function of cerebral ABC transporters - implications for the pathogenesis of Alzheimer's disease. Curr Alzheimer Res (2008) 0.88
Dynamics of biological systems: role of systems biology in medical research. Expert Rev Mol Diagn (2006) 0.88
Early development and quorum sensing in bacterial biofilms. J Math Biol (2003) 0.87
SBML export interface for the systems biology toolbox for MATLAB. Bioinformatics (2007) 0.87
How Modeling Standards, Software, and Initiatives Support Reproducibility in Systems Biology and Systems Medicine. IEEE Trans Biomed Eng (2016) 0.87
Non-coding RNA detection methods combined to improve usability, reproducibility and precision. BMC Bioinformatics (2010) 0.86
Parameter identifiability and sensitivity analysis predict targets for enhancement of STAT1 activity in pancreatic cancer and stellate cells. PLoS Comput Biol (2012) 0.86
A systems biology approach to analyse amplification in the JAK2-STAT5 signalling pathway. BMC Syst Biol (2008) 0.86
MicroRNA-regulated networks: the perfect storm for classical molecular biology, the ideal scenario for systems biology. Adv Exp Med Biol (2013) 0.86
A unified framework for unraveling the functional interaction structure of a biomolecular network based on stimulus-response experimental data. FEBS Lett (2005) 0.86
Identification of immunogenic consensus T-cell epitopes in globally distributed influenza-A H1N1 neuraminidase. Infect Genet Evol (2010) 0.86
Global transcriptional changes of Clostridium acetobutylicum cultures with increased butanol:acetone ratios. N Biotechnol (2012) 0.86
Multiscale stochastic modelling of gene expression. J Math Biol (2011) 0.85
PLMaddon: a power-law module for the Matlab SBToolbox. Bioinformatics (2007) 0.85
Association of RHAMM with E2F1 promotes tumour cell extravasation by transcriptional up-regulation of fibronectin. J Pathol (2014) 0.85
Intracellular delay limits cyclic changes in gene expression. Math Biosci (2006) 0.84
A Standard Operating Procedure (SOP) for the preparation of intra- and extracellular proteins of Clostridium acetobutylicum for proteome analysis. J Microbiol Methods (2006) 0.84
Modeling miRNA regulation in cancer signaling systems: miR-34a regulation of the p53/Sirt1 signaling module. Methods Mol Biol (2012) 0.84
Isolation, characterization, and identification of Geobacillus thermodenitrificans HRO10, an alpha-amylase and alpha-glucosidase producing thermophile. Can J Microbiol (2005) 0.84
Report on EU-USA workshop: how systems biology can advance cancer research (27 October 2008). Mol Oncol (2008) 0.84
Modeling the Calvin-Benson cycle. BMC Syst Biol (2011) 0.84
Mathematical modelling of tissue-engineered angiogenesis. Math Biosci (2009) 0.84
Exact and approximate distributions of protein and mRNA levels in the low-copy regime of gene expression. J Math Biol (2011) 0.84
Dynamical effects of epigenetic silencing of 14-3-3sigma expression. Mol Biosyst (2009) 0.83
The putative influence of the agr operon upon survival mechanisms used by Clostridium acetobutylicum. Math Biosci (2013) 0.83