Published in Biomed Inform Insights on June 24, 2013
Analysis of medication and indication occurrences in clinical notes. AMIA Annu Symp Proc (2014) 0.75
A general natural-language text processor for clinical radiology. J Am Med Inform Assoc (1995) 29.81
Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications. J Am Med Inform Assoc (2010) 13.18
Automated encoding of clinical documents based on natural language processing. J Am Med Inform Assoc (2004) 11.48
A broad-coverage natural language processing system. Proc AMIA Symp (2000) 10.51
Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system. BMC Med Inform Decis Mak (2006) 9.98
The eMERGE Network: a consortium of biorepositories linked to electronic medical records data for conducting genomic studies. BMC Med Genomics (2011) 9.20
Extracting medication information from clinical text. J Am Med Inform Assoc (2010) 8.36
What can natural language processing do for clinical decision support? J Biomed Inform (2009) 4.51
Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease. J Am Med Inform Assoc (2010) 4.33
Study of effect of drug lexicons on medication extraction from electronic medical records. Pac Symp Biocomput (2005) 3.88
Two biomedical sublanguages: a description based on the theories of Zellig Harris. J Biomed Inform (2002) 3.25
Extraction and mapping of drug names from free text to a standardized nomenclature. AMIA Annu Symp Proc (2007) 3.06
Community annotation experiment for ground truth generation for the i2b2 medication challenge. J Am Med Inform Assoc (2010) 3.05
A genome-wide association study of red blood cell traits using the electronic medical record. PLoS One (2010) 2.59
Automating the assignment of diagnosis codes to patient encounters using example-based and machine learning techniques. J Am Med Inform Assoc (2006) 2.53
The sublanguage of cross-coverage. Proc AMIA Symp (2002) 2.50
Mayo clinic smoking status classification system: extensions and improvements. AMIA Annu Symp Proc (2009) 2.40
Drug side effect extraction from clinical narratives of psychiatry and psychology patients. J Am Med Inform Assoc (2011) 1.56
Use of natural language programming to extract medication from unstructured electronic medical records. AMIA Annu Symp Proc (2007) 1.48
Part-of-speech tagging for clinical text: wall or bridge between institutions? AMIA Annu Symp Proc (2011) 1.26
Document clustering of clinical narratives: a systematic study of clinical sublanguages. AMIA Annu Symp Proc (2011) 1.16
Combining decision support methodologies to diagnose pneumonia. Proc AMIA Symp (2001) 1.09
The structure of science information. J Biomed Inform (2002) 1.01
Using Medical Text Extraction, Reasoning and Mapping System (MTERMS) to process medication information in outpatient clinical notes. AMIA Annu Symp Proc (2011) 1.01
Feasibility of pooling annotated corpora for clinical concept extraction. AMIA Jt Summits Transl Sci Proc (2012) 0.98
A hybrid approach to sentiment sentence classification in suicide notes. Biomed Inform Insights (2012) 0.90
Applying semantic-based probabilistic context-free grammar to medical language processing--a preliminary study on parsing medication sentences. J Biomed Inform (2011) 0.79
Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications. J Am Med Inform Assoc (2010) 13.18
BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Res (2009) 10.58
The eMERGE Network: a consortium of biorepositories linked to electronic medical records data for conducting genomic studies. BMC Med Genomics (2011) 9.20
Electronic medical records for genetic research: results of the eMERGE consortium. Sci Transl Med (2011) 5.82
Overview of BioCreative II gene mention recognition. Genome Biol (2008) 5.67
Framework for a protein ontology. BMC Bioinformatics (2007) 5.24
Overview of BioCreative II gene normalization. Genome Biol (2008) 5.05
Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data. Nat Biotechnol (2013) 4.85
Habitat-Lite: a GSC case study based on free text terms for environmental metadata. OMICS (2008) 4.40
The Electronic Medical Records and Genomics (eMERGE) Network: past, present, and future. Genet Med (2013) 4.37
Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease. J Am Med Inform Assoc (2010) 4.33
Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study. J Am Med Inform Assoc (2011) 4.20
Trends in mastectomy rates at the Mayo Clinic Rochester: effect of surgical year and preoperative magnetic resonance imaging. J Clin Oncol (2009) 4.13
National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge. OMICS (2006) 3.96
Mayo clinic NLP system for patient smoking status identification. J Am Med Inform Assoc (2007) 3.92
Variants near FOXE1 are associated with hypothyroidism and other thyroid conditions: using electronic medical records for genome- and phenome-wide studies. Am J Hum Genet (2011) 3.85
Measures of semantic similarity and relatedness in the biomedical domain. J Biomed Inform (2006) 3.09
Agreement between patient-reported symptoms and their documentation in the medical record. Am J Manag Care (2008) 3.08
Validation of electronic medical record-based phenotyping algorithms: results and lessons learned from the eMERGE network. J Am Med Inform Assoc (2013) 3.00
Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: the SHARPn project. J Biomed Inform (2012) 2.97
The gene normalization task in BioCreative III. BMC Bioinformatics (2011) 2.89
Gene name ambiguity of eukaryotic nomenclatures. Bioinformatics (2004) 2.72
A genome-wide association study of red blood cell traits using the electronic medical record. PLoS One (2010) 2.59
CellMiner: a web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set. Cancer Res (2012) 2.57
The National Center for Biomedical Ontology. J Am Med Inform Assoc (2011) 2.55
Automating the assignment of diagnosis codes to patient encounters using example-based and machine learning techniques. J Am Med Inform Assoc (2006) 2.53
CNTRO: A Semantic Web Ontology for Temporal Relation Inferencing in Clinical Narratives. AMIA Annu Symp Proc (2010) 2.44
The Pharmacogenomics Research Network Translational Pharmacogenetics Program: overcoming challenges of real-world implementation. Clin Pharmacol Ther (2013) 2.39
The MITRE Identification Scrubber Toolkit: design, training, and assessment. Int J Med Inform (2010) 2.29
Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs. Acad Med (2009) 2.25
LexGrid: a framework for representing, storing, and querying biomedical terminologies from simple to sublime. J Am Med Inform Assoc (2009) 2.20
Auditing the semantic completeness of SNOMED CT using formal concept analysis. J Am Med Inform Assoc (2008) 2.19
Electronic medical records for clinical research: application to the identification of heart failure. Am J Manag Care (2007) 2.18
Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk. Circulation (2013) 2.06
Mapping clinical phenotype data elements to standardized metadata repositories and controlled terminologies: the eMERGE Network experience. J Am Med Inform Assoc (2011) 2.04
Analyzing the heterogeneity and complexity of Electronic Health Record oriented phenotyping algorithms. AMIA Annu Symp Proc (2011) 2.03
iProLINK: an integrated protein resource for literature mining. Comput Biol Chem (2004) 1.96
Machine learning and word sense disambiguation in the biomedical domain: design and evaluation issues. BMC Bioinformatics (2006) 1.93
Word sense disambiguation across two domains: biomedical literature and clinical notes. J Biomed Inform (2008) 1.93
Discovering peripheral arterial disease cases from radiology notes using natural language processing. AMIA Annu Symp Proc (2010) 1.86
BioTagger-GM: a gene/protein name recognition system. J Am Med Inform Assoc (2008) 1.81
Cell lineage mapping of taste bud cells and keratinocytes in the mouse tongue and soft palate. Stem Cells (2009) 1.80
Analyzing categorical information in two publicly available drug terminologies: RxNorm and NDF-RT. J Am Med Inform Assoc (2010) 1.78
Using machine learning for concept extraction on clinical documents from multiple data sources. J Am Med Inform Assoc (2011) 1.76
Characterizing the epidemiology of postoperative transfusion-related acute lung injury. Anesthesiology (2015) 1.76
Prospective recruitment of patients with congestive heart failure using an ad-hoc binary classifier. J Biomed Inform (2005) 1.74
Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysis. J Am Med Inform Assoc (2012) 1.73
Domain-specific language models and lexicons for tagging. J Biomed Inform (2005) 1.72
A term extraction tool for expanding content in the domain of functioning, disability, and health: proof of concept. J Biomed Inform (2003) 1.68
Complement receptor 1 gene variants are associated with erythrocyte sedimentation rate. Am J Hum Genet (2011) 1.66
Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium. J Am Med Inform Assoc (2013) 1.64
Mayo Genome Consortia: a genotype-phenotype resource for genome-wide association studies with an application to the analysis of circulating bilirubin levels. Mayo Clin Proc (2011) 1.62
Abbreviation and acronym disambiguation in clinical discourse. AMIA Annu Symp Proc (2005) 1.61
Estrogens and experimental ischemic stroke: a systematic review. J Cereb Blood Flow Metab (2006) 1.59
Drug side effect extraction from clinical narratives of psychiatry and psychology patients. J Am Med Inform Assoc (2011) 1.56
Progesterone for the treatment of experimental brain injury; a systematic review. Brain (2007) 1.54
Using RxNorm and NDF-RT to classify medication data extracted from electronic health records: experiences from the Rochester Epidemiology Project. AMIA Annu Symp Proc (2011) 1.54
A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data. J Am Med Inform Assoc (2012) 1.51
VennMaster: area-proportional Euler diagrams for functional GO analysis of microarrays. BMC Bioinformatics (2008) 1.49
A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects. Hum Genet (2013) 1.47
Impact of data fragmentation across healthcare centers on the accuracy of a high-throughput clinical phenotyping algorithm for specifying subjects with type 2 diabetes mellitus. J Am Med Inform Assoc (2012) 1.47
G-CSF reduces infarct volume and improves functional outcome after transient focal cerebral ischemia in mice. J Cereb Blood Flow Metab (2005) 1.46
Maximum entropy modeling for mining patient medication status from free text. Proc AMIA Symp (2002) 1.45
Harmonization and semantic annotation of data dictionaries from the Pharmacogenomics Research Network: a case study. J Biomed Inform (2012) 1.45
Genome-wide depletion of replication initiation events in highly transcribed regions. Genome Res (2011) 1.44
Coreference analysis in clinical notes: a multi-pass sieve with alternate anaphora resolution modules. J Am Med Inform Assoc (2012) 1.44
Progesterone enhances functional recovery after middle cerebral artery occlusion in male mice. J Cereb Blood Flow Metab (2004) 1.43
Survey of modular ontology techniques and their applications in the biomedical domain. Integr Comput Aided Eng (2009) 1.42
An analytical approach to characterize morbidity profile dissimilarity between distinct cohorts using electronic medical records. J Biomed Inform (2010) 1.42
Building and evaluating annotated corpora for medical NLP systems. AMIA Annu Symp Proc (2006) 1.40
dbOGAP - an integrated bioinformatics resource for protein O-GlcNAcylation. BMC Bioinformatics (2011) 1.36
Modeling guidelines for integration into clinical workflow. Stud Health Technol Inform (2004) 1.32
A study of transportability of an existing smoking status detection module across institutions. AMIA Annu Symp Proc (2012) 1.31
Clinical decision support with automated text processing for cervical cancer screening. J Am Med Inform Assoc (2012) 1.30
SpliceCenter: a suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies. BMC Bioinformatics (2008) 1.29
Automatically extracting sentences from Medline citations to support clinicians' information needs. J Am Med Inform Assoc (2012) 1.29
Regulation of human skin pigmentation in situ by repetitive UV exposure: molecular characterization of responses to UVA and/or UVB. J Invest Dermatol (2010) 1.27
Comprehensive temporal information detection from clinical text: medical events, time, and TLINK identification. J Am Med Inform Assoc (2013) 1.26
An OWL meta-ontology for representing the Clinical Element Model. AMIA Annu Symp Proc (2011) 1.25
A comparative study of supervised learning as applied to acronym expansion in clinical reports. AMIA Annu Symp Proc (2006) 1.25
G-CSF suppresses edema formation and reduces interleukin-1beta expression after cerebral ischemia in mice. J Neuropathol Exp Neurol (2005) 1.25
SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis. BMC Bioinformatics (2007) 1.25
Towards Semantic-Web Based Representation and Harmonization of Standard Meta-data Models for Clinical Studies. AMIA Jt Summits Transl Sci Proc (2011) 1.25
Exon array analyses across the NCI-60 reveal potential regulation of TOP1 by transcription pausing at guanosine quartets in the first intron. Cancer Res (2010) 1.24
ADEpedia: a scalable and standardized knowledge base of Adverse Drug Events using semantic web technology. AMIA Annu Symp Proc (2011) 1.24
Modeling and executing electronic health records driven phenotyping algorithms using the NQF Quality Data Model and JBoss® Drools Engine. AMIA Annu Symp Proc (2012) 1.23
A Collaborative Framework for Representation and Harmonization of Clinical Study Data Elements Using Semantic MediaWiki. AMIA Jt Summits Transl Sci Proc (2010) 1.22
Applying semantic web technologies for phenome-wide scan using an electronic health record linked Biobank. J Biomed Semantics (2012) 1.20
Progesterone suppresses the inflammatory response and nitric oxide synthase-2 expression following cerebral ischemia. Exp Neurol (2005) 1.19
The first step toward data reuse: disambiguating concept representation of the locally developed ICU nursing flowsheets. Comput Inform Nurs (2008) 1.18
Using semantic web technologies for cohort identification from electronic health records for clinical research. AMIA Jt Summits Transl Sci Proc (2012) 1.17
Isosemantic rendering of clinical information using formal ontologies and RDF. Stud Health Technol Inform (2013) 1.15
Progesterone is neuroprotective following cerebral ischaemia in reproductively ageing female mice. Brain (2011) 1.14