Published in AMIA Annu Symp Proc on November 03, 2012
A review of approaches to identifying patient phenotype cohorts using electronic health records. J Am Med Inform Assoc (2013) 2.02
Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality. J Am Med Inform Assoc (2014) 1.25
ICD-9 tobacco use codes are effective identifiers of smoking status. J Am Med Inform Assoc (2013) 1.22
Secondary use of clinical data: the Vanderbilt approach. J Biomed Inform (2014) 1.12
Examining the use, contents, and quality of free-text tobacco use documentation in the Electronic Health Record. AMIA Annu Symp Proc (2014) 0.98
Enabling high-throughput genotype-phenotype associations in the Epidemiologic Architecture for Genes Linked to Environment (EAGLE) project as part of the Population Architecture using Genomics and Epidemiology (PAGE) study. Pac Symp Biocomput (2013) 0.93
Practical implementation of an existing smoking detection pipeline and reduced support vector machine training corpus requirements. J Am Med Inform Assoc (2013) 0.90
Automated Extraction of Substance Use Information from Clinical Texts. AMIA Annu Symp Proc (2015) 0.85
Evaluation of a Prediction Model for the Development of Atrial Fibrillation in a Repository of Electronic Medical Records. JAMA Cardiol (2016) 0.84
A genome-wide association study identifies variants in KCNIP4 associated with ACE inhibitor-induced cough. Pharmacogenomics J (2015) 0.84
Electronic medical record phenotyping using the anchor and learn framework. J Am Med Inform Assoc (2016) 0.81
Using Anchors to Estimate Clinical State without Labeled Data. AMIA Annu Symp Proc (2014) 0.80
A polymorphism in HLA-G modifies statin benefit in asthma. Pharmacogenomics J (2014) 0.79
Comparison of Three Information Sources for Smoking Information in Electronic Health Records. Cancer Inform (2016) 0.78
Integrating information retrieval with distant supervision for gene ontology annotation. Database (Oxford) (2014) 0.77
An Empirical Study for Impacts of Measurement Errors on EHR based Association Studies. AMIA Annu Symp Proc (2017) 0.75
Investigating Longitudinal Tobacco Use Information from Social History and Clinical Notes in the Electronic Health Record. AMIA Annu Symp Proc (2017) 0.75
A general natural-language text processor for clinical radiology. J Am Med Inform Assoc (1995) 29.81
Development of a large-scale de-identified DNA biobank to enable personalized medicine. Clin Pharmacol Ther (2008) 11.67
An overview of MetaMap: historical perspective and recent advances. J Am Med Inform Assoc (2010) 11.60
Identifying patient smoking status from medical discharge records. J Am Med Inform Assoc (2007) 10.35
Extracting medication information from clinical text. J Am Med Inform Assoc (2010) 8.36
MedEx: a medication information extraction system for clinical narratives. J Am Med Inform Assoc (2010) 6.01
"Understanding" medical school curriculum content using KnowledgeMap. J Am Med Inform Assoc (2003) 5.19
Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study. J Am Med Inform Assoc (2011) 4.20
Mayo clinic NLP system for patient smoking status identification. J Am Med Inform Assoc (2007) 3.92
Variants near FOXE1 are associated with hypothyroidism and other thyroid conditions: using electronic medical records for genome- and phenome-wide studies. Am J Hum Genet (2011) 3.85
Extracting findings from narrative reports: software transferability and sources of physician disagreement. Methods Inf Med (1998) 3.67
Portability of an algorithm to identify rheumatoid arthritis in electronic health records. J Am Med Inform Assoc (2012) 2.94
Identifying smokers with a medical extraction system. J Am Med Inform Assoc (2007) 2.54
Five-way smoking status classification using text hot-spot identification and error-correcting output codes. J Am Med Inform Assoc (2007) 2.50
Mayo clinic smoking status classification system: extensions and improvements. AMIA Annu Symp Proc (2009) 2.40
High accuracy information extraction of medication information from clinical notes: 2009 i2b2 medication extraction challenge. J Am Med Inform Assoc (2010) 2.29
Medical i2b2 NLP smoking challenge: the A-Life system architecture and methodology. J Am Med Inform Assoc (2007) 1.91
Using implicit information to identify smoking status in smoke-blind medical discharge summaries. J Am Med Inform Assoc (2007) 1.89
Automated extraction of ejection fraction for quality measurement using regular expressions in Unstructured Information Management Architecture (UIMA) for heart failure. J Am Med Inform Assoc (2012) 1.72
Medication information extraction with linguistic pattern matching and semantic rules. J Am Med Inform Assoc (2010) 1.29
Textractor: a hybrid system for medications and reason for their prescription extraction from clinical text documents. J Am Med Inform Assoc (2010) 1.23
Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (2010) 12.39
Robust replication of genotype-phenotype associations across multiple diseases in an electronic medical record. Am J Hum Genet (2010) 6.44
MedEx: a medication information extraction system for clinical narratives. J Am Med Inform Assoc (2010) 6.01
Electronic medical records for genetic research: results of the eMERGE consortium. Sci Transl Med (2011) 5.82
Overview of BioCreative II gene mention recognition. Genome Biol (2008) 5.67
Framework for a protein ontology. BMC Bioinformatics (2007) 5.24
Overview of BioCreative II gene normalization. Genome Biol (2008) 5.05
Inactivating mutations in NPC1L1 and protection from coronary heart disease. N Engl J Med (2014) 4.94
Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data. Nat Biotechnol (2013) 4.85
An elt-3/elt-5/elt-6 GATA transcription circuit guides aging in C. elegans. Cell (2008) 4.72
The Electronic Medical Records and Genomics (eMERGE) Network: past, present, and future. Genet Med (2013) 4.37
Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study. J Am Med Inform Assoc (2011) 4.20
Evaluation of a method to identify and categorize section headers in clinical documents. J Am Med Inform Assoc (2009) 3.80
Detectable clonal mosaicism and its relationship to aging and cancer. Nat Genet (2012) 3.69
Genetic ancestry in lung-function predictions. N Engl J Med (2010) 3.30
Return of individual research results from genome-wide association studies: experience of the Electronic Medical Records and Genomics (eMERGE) Network. Genet Med (2012) 3.29
Automated acquisition of disease drug knowledge from biomedical and clinical documents: an initial study. J Am Med Inform Assoc (2007) 3.09
The landscape of recombination in African Americans. Nature (2011) 3.06
Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function. Nat Genet (2011) 3.03
Validation of electronic medical record-based phenotyping algorithms: results and lessons learned from the eMERGE network. J Am Med Inform Assoc (2013) 3.00
Portability of an algorithm to identify rheumatoid arthritis in electronic health records. J Am Med Inform Assoc (2012) 2.94
The gene normalization task in BioCreative III. BMC Bioinformatics (2011) 2.89
Computational phenotype discovery using unsupervised feature learning over noisy, sparse, and irregular clinical data. PLoS One (2013) 2.81
Gene name ambiguity of eukaryotic nomenclatures. Bioinformatics (2004) 2.72
A study of machine-learning-based approaches to extract clinical entities and their assertions from discharge summaries. J Am Med Inform Assoc (2011) 2.70
Acute stress affects heart rate variability during sleep. Psychosom Med (2004) 2.64
Data from clinical notes: a perspective on the tension between structure and flexible documentation. J Am Med Inform Assoc (2011) 2.57
CellMiner: a web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set. Cancer Res (2012) 2.57
Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence. Genome Res (2010) 2.56
Prospective derivation and validation of a clinical prediction rule for recurrent Clostridium difficile infection. Gastroenterology (2008) 2.50
The disclosure of diagnosis codes can breach research participants' privacy. J Am Med Inform Assoc (2010) 2.45
The financial impact of health information exchange on emergency department care. J Am Med Inform Assoc (2011) 2.38
Missing covariate data in medical research: to impute is better than to ignore. J Clin Epidemiol (2010) 2.37
Bacteria penetrate the normally impenetrable inner colon mucus layer in both murine colitis models and patients with ulcerative colitis. Gut (2013) 2.32
An evaluation of the NQF Quality Data Model for representing Electronic Health Record driven phenotyping algorithms. AMIA Annu Symp Proc (2012) 2.29
Predicting lung cancer prior to surgical resection in patients with lung nodules. J Thorac Oncol (2014) 2.17
Analysis of cell fate from single-cell gene expression profiles in C. elegans. Cell (2009) 2.16
Obesity increases operating room time for lobectomy in the society of thoracic surgeons database. Ann Thorac Surg (2012) 2.16
Assessing the accuracy of observer-reported ancestry in a biorepository linked to electronic medical records. Genet Med (2010) 2.09
Roles of the HIF-1 hypoxia-inducible factor during hypoxia response in Caenorhabditis elegans. J Biol Chem (2005) 2.07
Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk. Circulation (2013) 2.06
Analyzing the heterogeneity and complexity of Electronic Health Record oriented phenotyping algorithms. AMIA Annu Symp Proc (2011) 2.03
Structure-based design of novel inhibitors of the MDM2-p53 interaction. J Med Chem (2012) 2.01
iProLINK: an integrated protein resource for literature mining. Comput Biol Chem (2004) 1.96
Effectiveness of non-adjuvanted pandemic influenza A vaccines for preventing pandemic influenza acute respiratory illness visits in 4 U.S. communities. PLoS One (2011) 1.94
Extracting timing and status descriptors for colonoscopy testing from electronic medical records. J Am Med Inform Assoc (2010) 1.94
Machine learning and word sense disambiguation in the biomedical domain: design and evaluation issues. BMC Bioinformatics (2006) 1.93
Electronic health records-driven phenotyping: challenges, recent advances, and perspectives. J Am Med Inform Assoc (2013) 1.85
Health information exchange usage in emergency departments and clinics: the who, what, and why. J Am Med Inform Assoc (2011) 1.82
A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry. Nat Genet (2013) 1.82
BioTagger-GM: a gene/protein name recognition system. J Am Med Inform Assoc (2008) 1.81
Importance of multi-modal approaches to effectively identify cataract cases from electronic health records. J Am Med Inform Assoc (2012) 1.79
Can graphene be used as a substrate for Raman enhancement? Nano Lett (2010) 1.78
The interferon stimulated gene 15 functions as a proviral factor for the hepatitis C virus and as a regulator of the IFN response. Gut (2010) 1.77
Using machine learning for concept extraction on clinical documents from multiple data sources. J Am Med Inform Assoc (2011) 1.76
Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysis. J Am Med Inform Assoc (2012) 1.73
Genetic analysis of pathways regulated by the von Hippel-Lindau tumor suppressor in Caenorhabditis elegans. PLoS Biol (2004) 1.72
Overweight is associated with decreased cognitive functioning among school-age children and adolescents. Obesity (Silver Spring) (2008) 1.71
Facilitating pharmacogenetic studies using electronic health records and natural-language processing: a case study of warfarin. J Am Med Inform Assoc (2011) 1.67
Complement receptor 1 gene variants are associated with erythrocyte sedimentation rate. Am J Hum Genet (2011) 1.66
Predicting warfarin dosage in European-Americans and African-Americans using DNA samples linked to an electronic health record. Pharmacogenomics (2012) 1.66
Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium. J Am Med Inform Assoc (2013) 1.64
A hybrid system for temporal information extraction from clinical text. J Am Med Inform Assoc (2013) 1.63
Genetic polymorphisms in the estrogen receptor alpha gene and risk of breast cancer: results from the Shanghai Breast Cancer Study. Cancer Epidemiol Biomarkers Prev (2003) 1.62
Genes that escape X-inactivation in humans have high intraspecific variability in expression, are associated with mental impairment but are not slow evolving. Mol Biol Evol (2013) 1.61
Aurora-A/STK15 T+91A is a general low penetrance cancer susceptibility gene: a meta-analysis of multiple cancer types. Carcinogenesis (2005) 1.61
LncRNAs expression signatures of renal clear cell carcinoma revealed by microarray. PLoS One (2012) 1.59
Hepatitis B virus suppresses toll-like receptor-mediated innate immune responses in murine parenchymal and nonparenchymal liver cells. Hepatology (2009) 1.59
Naïve Electronic Health Record phenotype identification for Rheumatoid arthritis. AMIA Annu Symp Proc (2011) 1.56
Congenital diaphragmatic hernia, kidney agenesis and cardiac defects associated with Slit3-deficiency in mice. Mech Dev (2003) 1.55
Effectiveness of seasonal vaccine in preventing confirmed influenza-associated hospitalizations in community dwelling older adults. J Infect Dis (2011) 1.54
KCNQ1 and KCNE1 in the IKs channel complex make state-dependent contacts in their extracellular domains. J Gen Physiol (2008) 1.52
Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function. PLoS Genet (2012) 1.52
Dietary intake of PUFAs and colorectal polyp risk. Am J Clin Nutr (2012) 1.51
VennMaster: area-proportional Euler diagrams for functional GO analysis of microarrays. BMC Bioinformatics (2008) 1.49
The state of molecular biomarkers for the early detection of lung cancer. Cancer Prev Res (Phila) (2012) 1.49
A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects. Hum Genet (2013) 1.47
Structural and functional role of the extracellular s5-p linker in the HERG potassium channel. J Gen Physiol (2002) 1.46
Recognizing clinical entities in hospital discharge summaries using Structural Support Vector Machines with word representation features. BMC Med Inform Decis Mak (2013) 1.46
Characterization of an LQT5-related mutation in KCNE1, Y81C: implications for a role of KCNE1 cytoplasmic domain in IKs channel function. Heart Rhythm (2006) 1.45
Genome-wide depletion of replication initiation events in highly transcribed regions. Genome Res (2011) 1.44
Human rhinovirus C associated with wheezing in hospitalised children in the Middle East. J Clin Virol (2009) 1.44
Coreference analysis in clinical notes: a multi-pass sieve with alternate anaphora resolution modules. J Am Med Inform Assoc (2012) 1.44
Associations of autoantibodies, autoimmune risk alleles, and clinical diagnoses from the electronic medical records in rheumatoid arthritis cases and non-rheumatoid arthritis controls. Arthritis Rheum (2013) 1.43
Large-scale prediction of adverse drug reactions using chemical, biological, and phenotypic properties of drugs. J Am Med Inform Assoc (2012) 1.43
Knowledge-driven multi-locus analysis reveals gene-gene interactions influencing HDL cholesterol level in two independent EMR-linked biobanks. PLoS One (2011) 1.42
Cloning and characterization of a novel human pantothenate kinase gene. Int J Biochem Cell Biol (2002) 1.42
An analytical approach to characterize morbidity profile dissimilarity between distinct cohorts using electronic medical records. J Biomed Inform (2010) 1.42